Rh2BG038600

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001803
Physical Location & Seq
Reverse (-)
2673239 .. 2690646
17408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG038600.1

Sequence Viewer

Length: 5613 bp
ATGACGCCGAAGCAGCTCCTCGCGGTAATCGAATCGGCGCTACTAGGCCCGCTGCCTCCGAGCCCATCTCAGAGAGTGGAGCTCATGCACGCTATTCGAAGCTCTCTCCCGTCGCTCCAGTCCCTCCTCTCATATCCGCCTCCGAAGCCGTCGGACCGAGCTCAAGTTCAGTCCAAAGAAGTTAGGCTTCCGAATGGGCCACCGATTTTGCTCGATGACCAGGACGTCCAGATTGCTTTGAAGTTAAGTGATGACCTCCATCTCAACGAGATTGATTGTGTCCGTTTGATTGTCTCTGCAAATCAAGAGTGGGGCTTAATGGGAAGAGAGCCACTAGAAATTTTGCGCCTTGCAACAGGGCTCTGGTACACTGAGAGAAGAGATCTATTAACAGCTGTCTATACACTTTTAAGGGCTGTTGTGCTTGATCAGGGACTTGAAGCTGAAGTTGTATCTGACATTCAAAAATATCTGGAAAATCTTATCAATAATGGGCTTAGACAGAGGTTAATATCTCTTATAAAGGAACTTAATCGAGAAGAACCAGCTGGCCTGGGCGGGCCTCATTCTGAACGTTATGTTCTCGATTCTAGAGGTGCTCTTGTTGTACGACAAGCTGTGGTTTCCCGGGAAAGGCTCATACTTGGACACTGCCTCATTCTTTCTATTCTGGTTGTGCGGACAAGTCCAAAGGATGTAAAGGATATATTTCTCGTGTATAAAGATAGTGCTTCTGAACTTAGTGGGACTAATGACACTATAAAACGCCAGATTACATTCAGTCTTCTTTTTTCTCTTGTGATCGCTTTCGTATCAGACGCTCTGAGTGCAGCACCTGATAAAGCATCTGTCCTGTCCCGGGATGCATCTTTTAGACATGAATTTCATGAAATCGTAATGGCAGCCGGAAATGATCCAAATGTTGAGGGCTTTGTCGGTACCATAAGGCTTGCTTGGGCTGTACACTTGATGTTAATACAAGATGCTCTTCCCGGAAGGGATGCTATTTCAAGTGCTTCATCGAGTGATTTGGGTTATCTCCAGTTGTGCTTAGAAGTGGTTTTTTCAAAGAACGTTTTCCAGTTTATATTAGATGAAGTTCTTAAAACTGCAGCTTATGAGAATGATGACGAGGATATAAGCTATATGTACAATGCTTATCTTCACAAGTTGATCACCTGCTTCTTATCTCACCCACTTGCCAGAGACAAGGTCAAAGAATCAAAGGAGAGGGCAATGAGCATGCTTAGTCCATACCGCCTGGTTGGATCACATGATTTTTCGCATGATAGTAACCAAACTTCACAAGCCTCTGAAAATGGTCCACTACCATTCGTCTCTCTTTTGGAGTTTGTGAGTGGAATTTATCAGAAGGAACCAGAGCTGTTGTCTGGCAATGATGTCTTGTGGACCTTTGTGAACTTTGCTGGAGAGGACCATACAAATTTTCAAACCCTTGTGGCTTTCTTGAACATGCTGAGTACCTTGGCTTCTAGTCAAGAAGGTGCTGCAAAGGTTTTTGAGTTACTTCAGGGAAAAGTGTTTCGTTCTGTTGGTTGGAGCACTTTGTTTGATAGCTTATCAATTTATGACGAGAAGTTTAAACAGTCCCTTCAAACTGCTGGTGCCATGTTACCGGAACTCCCAGAGGGTGATGCAAAAGCACTCGTTGCTTATTTGAATGTCCTTCAAAAGGTTGTGGAAAATGGAAATCCCCTTGAACGAAAGAACTGGTTTCCTGATATTGAGCCTTTGTTTAAGCTTCTTGGTTATGAAAATGTGCCTCCTTATCTAAAGGGTGCCTTGCGTAATGCAATAACAACTTTTGTATATGTCTCTCCTGTCCTAAAAGATACAGTCTGGAGTTATCTTGAGCAGTATGATCTCCCCGTGGTTGTTGGATCTCATGTTGGGAAGAGTGCACAGCCCATGGCTGCACAGGTGTATGATATGCAATTTGAGCTCAATGAAATAGAAGCAAGGAGAGAGCAATATCCTTCAACAATATCCTTCCTTAACCTGTTAAATGCTCTTATATCTGAAGAAAGAGACTTAAGTGATAGAGGGCGCAGATTCATTGGAATTTTCAGGTTCATTTATGATCATGTTTTTAGGCCATTCCCTCAAAGAGCCTATGCCGATCCTTGTGAGAAATGGCAATTAGTTGTTGCATGTCTTCAGCACTTTCATATGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAAGACTTTATGAGTGGAAAATCTGTTTTCCGGAACATCATGGGCATCCTTCTGCCAGGTGTCAATACCATTATAACTGAACGAACAAATCAAGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTCTCATTGGAGATTATAATCCTTGTCTTGGAGAAGGATTTGCTTCTTTCTGATTTCTGGCGTCCTCTTTACCAGCCTCTGGATGTTATACTCTCTCAAGATCATAATCAAATTGTAGCTTTATTGGAATATGTCAGATATGATTTTCGACCACAAATTCAGCAGTGCTCTGTCAAAATCATGAGTATATTAAGTTCTCGCATGGTCGGGCTTGTACAATTACTGCTAAAGTCAAATGCTGCAAGCTGTTTGATTGAGGATTATGCAGCCTGCCTAGAATTACGATCAGAGGATTCTCAGGTGATAGAGAACACTAGTGATGATCCAGGTGTACTAATATTGCAGCTTCTAATTGACAATATCAGTCGGCCAGCTCCCAATATCACCCATTTGCTACTCAAATTTGATCTTGACAGTCCCATTGAGCGTACTGTGCTACAACCAAAATTTCATTACAGTTGCTTGAAGGTTATCCTTGAGATCTTGGAGAAGCTTTCAAAGCCTGATGTGAATATGTTACTTCATGAATTTGGTTTTCAGCTCCTTTATAAATTGTGTGTGGATCCACTAACATGTGATCCTGCGATGGATCTGTTGAGTAGTAAGAAGTATCAGTTTTTTGTAAAGCACCTAGATATGATTGGGGTTGCCCCACTTCCTAAAAGGAAGAACAACCAGGCCCTACGCGTCAGTTCCCTTCATCAGAGAGCTTGGCTGTTGAAACTACTAGCTATTGAACTTCATGTTGGTGATGTCAATAAATCCACTCACCTAGAAACATCTCGTAGCATCCTTGCGCATCTTTTTGGGCAGGAAACTTTCGAAACTGGAATTGATCACCTCATGTCTCATTCGTTTTCTCCTCAAGATGGTGTTGAACATGCTGGAACCCAAACTGTCGGGAAGAGTAAGGTGTTGGAGTTGCTTGAAGTGGTCCAGTTTAGATTCCCGGATACAAACACGAAGCTTTCTGAGATTGTTTCCAATACGAAATATGATTTGTTGGCAGAGGATGTAGTTTGTAATCCTACTACTTCTGGAAAGAGTGGTGTCCATTACTATTCGGAGCGTGGTGATCGATTGATAGACCTTGCGTCATTCCGTGATAAACTTTGGCAGAAATTCAATGCTGTTTATCCCCACTTGAGTAACATTGGAAGTGAAGCAGAGCTGAACGATGCAAAAGAAACAATTCAACAGTTGTTGAGATGGGGATGGAAGAACAATAAGAACGTTGAAGAGCAAGCTGCCCAACTTCATATGTTAACCGCCTGGTCGCAAGTTGTTGAGATCTCTGCTTCCCGAAGAATATCATCACTTGGACATCAATCTGAACTTCTATATCAGATTCTTGTAGCTGCTTTGACTGCTTCTGCTTCTCAAGATTGTTCATTAAAGATGGCATTTTTGTTGTGTCAGGTTGCATTGACATGCATGGCAAAGTTACGAGATGAAAGATTTTTATTCCCTGGTGGCTTTAGTTCTGATAATCAGGCATGTCTTGATATTATCATGGCAAAACAATTACCAAATGCAGCTTGTCATTCAATCCTGTTTAGGCTCATATTGGCAATTCTCAGACATGAATCATCAGAAGCCTTAAGGAGACGGCAATATGCACTGCTCCTCAGCTATTTTCAGTATTGTCAGCATATGCTTGATCCAGATATCCCATCAACAGTTCTGCAATTTTTGTTGCTTGATGAGCAAGAGGGTGAAGATCTGGATCTCCAGAAGATCAATCGAGAACAAGCAGAACTTGCCCGTGCCAATTTCAATATTTTAAGAAAAGAAGCTCAATCTATTTTGGATTTGGTAATAAAAGATGCTACTCAAGGAAGTGAACTTGGGAAGACTATGGCACTCTATGTTTTGGATGCAATCATCTGTGTAGATCATGATAGATATTTCCTGGGCCAACTTCAAAGCAGGGGTTTCCTAAGATCTTGTCTTACGAACATCAGCAGCATATCTTATCAGGATGGTGCACATTCTCGAGACTCAATGCAGCGAGCGCAAACTCTGGAGGCTGAACTTGCTTTGCTTTTGAGAATAAGCCATAAGTATGGGAAATCTGGAGCTCAGGTTATCTTTACAATGGGGGCTTTGGAGCATATTGCTTCATGCAGGGCGGTCAACGTTTTCGGAAGTTTGCGATGGATTGACACTAAGAATCAAAGAGATATCAACAAGCAAAGGATGATTGTAACCCCTATTCTGAGATTGGTGTTTTCTCTGTTGTCTCTAGTTGATACATCCGAATTTTATGAGGTGAAGAATAAAGTTGTTCGGGAAGTCATAGAATTTGTCAAGGGACATAGATCACTTTTTGATCATGTTCTTCGGGAAGACATTTCCCAAGCTGATGAGTTGGTGATGGAGCAGATAAACCTTGTTGTTGGTATACTAAGCAAGGTTTGGCCATATGAAGAGAGTGACGAATCTGGCTTTGTTCAAGGTCTTTTTTGTTTGATGCATGCTCTTTTCTCTCGTGACTGTGAGACTCTAAGTTCTGCTCAATCAGTTCGATCTGTTGAGAATCACAGGAAAACAGAGCTTAACTCACTTCGAATATGCTTCAGCCTCAGCTCATATCTATATTTTCTAGTCACAAAGAAGTCCTTTAGACTGCAGGTCTCAGACATGCCTCCTGATTACAATGCTGCCGTTTCCTTTCAACAGCCAACATTGAGTTTGCTTGGATCTTTTCTCACTTCTTTAACAAGTGCTCTTGAAAGAGCTGCTGAGGAAAAATCCTTACTTCTTAATAGGATTCGAGACATAAATGAATTATCAAGACAGGAGGTGGATGAAATTATCAATATGTATGCTCGGCAAGTATATGTTTCATCATCTGAGAATATACAGAAAAGGAGGTATATTGCGATGGTGGAAATGTGCCATGTTGTCGGGAATAGAGATCAGTTAATAACTATATTACTTCCACTAGTGGAACATGTGCTGAATGTCTTCCTAAGCCATTTTCAGGACAGGTATGGATCTTATCTTCTTTCCCCATCCCCTGCCTTAATTTTTCAAAAGAAGGGTTTGCTGATGGGAGTATATGTAGAGTCTTGTAAGAGATTGTATCATTGTCAGACCAAAAATGAAAAAAGCGATCATATTTATGTACATATTCCCATATGGACTTCAGTTCCGACCTATAATTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

1870

Amino Acids

211.68

Weight (kDa)

5.71

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup192 PF11894 26 - 1602 7.7e-103 Nuclear pore complex scaffold, nucleoporins 186/192/205
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 521, 2384, 2453, 2985
AarI CACCTGC 1 cut(s) 1187
AasI GACNNNNNNGTC 1 cut(s) 224
AatII GACGTC 1 cut(s) 228
Acc16I TGCGCA 1 cut(s) 3234
Acc36I ACCTGC 2 cut(s) 1187, 5059
Acc65I GGTACC 1 cut(s) 938
AccB1I GGYRCC 3 cut(s) 938, 1625, 1799
AccB7I CCANNNNNTGG 1 cut(s) 2515
AccI GTMKAC 1 cut(s) 4840
AccII CGCG 2 cut(s) 23, 3123
AccIII TCCGGA 1 cut(s) 2340
AciI CCGC 8 cut(s) 23, 50, 137, 558, 679, 1258, 3705, 4568
AclI AACGTT 4 cut(s) 574, 1074, 3669, 4575
AcoI YGGCCR 2 cut(s) 2804, 4856
AcuI CTGAAG 6 cut(s) 465, 1514, 2061, 2162, 4999, 5571
AcyI GRCGYC 3 cut(s) 5, 225, 2497
AfiI CCNNNNNNNGG 7 cut(s) 633, 859, 1693, 2464, 2515, 3305, 5422
AflII CTTAAG 2 cut(s) 2053, 4036
AflIII ACRYGT 3 cut(s) 3008, 3121, 5392
AhdI GACNNNNNGTC 2 cut(s) 3529, 5069
AhlI ACTAGT 2 cut(s) 2750, 5383
AjnI CCWGG 9 cut(s) 219, 552, 1260, 2365, 2761, 3111, 3707, 3904, 4347
AjuI GAANNNNNNNTTGG 2 cut(s) 3165, 3197
Alw44I GTGCAC 2 cut(s) 1920, 4422
AlwNI CAGNNNCTG 2 cut(s) 836, 2515
Ama87I CYCGRG 3 cut(s) 627, 858, 4431
Aor13HI TCCGGA 1 cut(s) 2340
AoxI GGCC 9 cut(s) 46, 197, 550, 560, 2114, 2804, 3114, 4351, 4856
ApaLI GTGCAC 2 cut(s) 1920, 4422
Asp700I GAANNNNTTC 3 cut(s) 1076, 3627, 5405
Asp718I GGTACC 1 cut(s) 938
AspLEI GCGC 5 cut(s) 40, 348, 2070, 3235, 4453
AsuC2I CCSGG 6 cut(s) 628, 629, 859, 860, 993, 3386
AsuII TTCGAA 3 cut(s) 97, 3258, 5005
AvaI CYCGRG 3 cut(s) 627, 858, 4431
AvaII GGWCC 5 cut(s) 154, 1322, 1410, 1435, 3370
BaeGI GKGCMC 2 cut(s) 1924, 4426
BalI TGGCCA 1 cut(s) 4858
BamHI GGATCC 1 cut(s) 2998
BanI GGYRCC 3 cut(s) 938, 1625, 1799
BanII GRGCYC 6 cut(s) 65, 84, 163, 363, 1965, 4519
BarI GAAGNNNNNNTAC 4 cut(s) 1285, 1317, 1474, 1506
BauI CACGAG 2 cut(s) 713, 4926
BbsI GAAGAC 5 cut(s) 776, 2168, 4295, 4791, 5398
BbvCI CCTCAGC 3 cut(s) 4064, 5021, 5181
BceAI ACGGC 3 cut(s) 133, 4061, 5087
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 9 cut(s) 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349
BciVI GTATCC 1 cut(s) 3382
BclI TGATCA 6 cut(s) 427, 1173, 2101, 2242, 3271, 4768
BcnI CCSGG 6 cut(s) 628, 629, 859, 860, 993, 3386
BcuI ACTAGT 2 cut(s) 2750, 5383
BfmI CTRYAG 2 cut(s) 1110, 5066
BfoI RGCGCY 1 cut(s) 41
BfrI CTTAAG 2 cut(s) 2053, 4036
BfuAI ACCTGC 2 cut(s) 1187, 5059
BfuI GTATCC 1 cut(s) 3382
BglII AGATCT 5 cut(s) 382, 2916, 3726, 4156, 4379
Bme18I GGWCC 5 cut(s) 154, 1322, 1410, 1435, 3370
BmeRI GACNNNNNGTC 2 cut(s) 3529, 5069
BmeT110I CYCGRG 3 cut(s) 627, 858, 4431
BmiI GGNNCC 6 cut(s) 940, 1377, 1627, 1801, 3000, 3325
BpiI GAAGAC 5 cut(s) 776, 2168, 4295, 4791, 5398
BplI GAGNNNNNCTC 6 cut(s) 52, 84, 66, 98, 4982, 5014
BpmI CTGGAG 8 cut(s) 101, 1025, 1449, 1882, 2264, 4151, 4481, 4533
Bpu10I CCTNAGC 5 cut(s) 4064, 4518, 5021, 5181, 5411
Bpu14I TTCGAA 3 cut(s) 97, 3258, 5005
BpuEI CTTGAG 8 cut(s) 147, 1892, 2517, 2933, 3285, 3601, 3801, 4254
BpuMI CCSGG 6 cut(s) 628, 629, 859, 860, 993, 3386
Bsa29I ATCGAT 1 cut(s) 3514
BsaBI GATNNNNATC 3 cut(s) 2453, 2541, 4161
BsaHI GRCGYC 3 cut(s) 5, 225, 2497
BsaI GGTCTC 1 cut(s) 5077
BsaJI CCNNGG 8 cut(s) 553, 627, 858, 1485, 1890, 1929, 3904, 4348
BsaWI WCCGGW 2 cut(s) 1636, 2340
BsaXI ACNNNNNCTCC 6 cut(s) 1626, 1656, 4506, 4536, 5487, 5517
Bsc4I CCNNNNNNNGG 7 cut(s) 633, 859, 1693, 2464, 2515, 3305, 5422
Bse1I ACTGG 6 cut(s) 118, 1042, 1081, 1736, 3268, 3373
Bse3DI GCAATG 2 cut(s) 1242, 1402
Bse8I GATNNNNATC 3 cut(s) 2453, 2541, 4161
BseAI TCCGGA 1 cut(s) 2340
BseBI CCWGG 9 cut(s) 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349
BseCI ATCGAT 1 cut(s) 3514
BseDI CCNNGG 8 cut(s) 553, 627, 858, 1485, 1890, 1929, 3904, 4348
BseJI GATNNNNATC 3 cut(s) 2453, 2541, 4161
BseLI CCNNNNNNNGG 7 cut(s) 633, 859, 1693, 2464, 2515, 3305, 5422
BseMI GCAATG 2 cut(s) 1242, 1402
BseNI ACTGG 6 cut(s) 118, 1042, 1081, 1736, 3268, 3373
BseRI GAGGAG 4 cut(s) 8, 116, 3288, 4052
BseSI GKGCMC 2 cut(s) 1924, 4426
BsgI GTGCAG 2 cut(s) 849, 1920
Bsh1236I CGCG 2 cut(s) 23, 3123
BshFI GGCC 9 cut(s) 48, 199, 552, 562, 2116, 2806, 3116, 4353, 4858
BshNI GGYRCC 3 cut(s) 938, 1625, 1799
BshVI ATCGAT 1 cut(s) 3514
BsiHKCI CYCGRG 3 cut(s) 627, 858, 4431
BsiSI CCGG 7 cut(s) 628, 859, 906, 993, 1637, 2341, 3386
BslFI GGGAC 7 cut(s) 106, 447, 760, 841, 1594, 2838, 4764
BslI CCNNNNNNNGG 7 cut(s) 633, 859, 1693, 2464, 2515, 3305, 5422
BsmBI CGTCTC 2 cut(s) 1342, 4036
BsmFI GGGAC 7 cut(s) 106, 447, 760, 841, 1594, 2838, 4764
BsnI GGCC 9 cut(s) 48, 199, 552, 562, 2116, 2806, 3116, 4353, 4858
Bso31I GGTCTC 1 cut(s) 5077
BsoBI CYCGRG 3 cut(s) 627, 858, 4431
Bsp119I TTCGAA 3 cut(s) 97, 3258, 5005
Bsp13I TCCGGA 1 cut(s) 2340
Bsp1407I TGTACA 4 cut(s) 961, 1149, 2650, 5566
Bsp19I CCATGG 1 cut(s) 1929
BspACI CCGC 8 cut(s) 23, 50, 137, 558, 679, 1258, 3705, 4568
BspANI GGCC 9 cut(s) 48, 199, 552, 562, 2116, 2806, 3116, 4353, 4858
BspDI ATCGAT 1 cut(s) 3514
BspEI TCCGGA 1 cut(s) 2340
BspFNI CGCG 2 cut(s) 23, 3123
BspHI TCATGA 4 cut(s) 886, 2616, 2959, 4333
BspLI GGNNCC 6 cut(s) 940, 1377, 1627, 1801, 3000, 3325
BspMAI CTGCAG 2 cut(s) 1114, 5070
BspMI ACCTGC 2 cut(s) 1187, 5059
BspQI GCTCTTC 2 cut(s) 993, 3669
BspT104I TTCGAA 3 cut(s) 97, 3258, 5005
BspT107I GGYRCC 3 cut(s) 938, 1625, 1799
BspTI CTTAAG 2 cut(s) 2053, 4036
BspTNI GGTCTC 1 cut(s) 5077
BsrDI GCAATG 2 cut(s) 1242, 1402
BsrGI TGTACA 4 cut(s) 961, 1149, 2650, 5566
BsrI ACTGG 6 cut(s) 118, 1042, 1081, 1736, 3268, 3373
BssECI CCNNGG 8 cut(s) 553, 627, 858, 1485, 1890, 1929, 3904, 4348
BssNAI GTATAC 1 cut(s) 4841
BssNI GRCGYC 3 cut(s) 5, 225, 2497
BssSI CACGAG 2 cut(s) 713, 4926
BssT1I CCWWGG 2 cut(s) 1485, 1929
Bst1107I GTATAC 1 cut(s) 4841
Bst2BI CACGAG 2 cut(s) 713, 4926
Bst2UI CCWGG 9 cut(s) 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349
Bst6I CTCTTC 8 cut(s) 319, 373, 993, 1910, 2214, 3335, 3669, 4860
BstACI GRCGYC 3 cut(s) 5, 225, 2497
BstAFI CTTAAG 2 cut(s) 2053, 4036
BstAPI GCANNNNNTGC 2 cut(s) 1670, 4196
BstAUI TGTACA 4 cut(s) 961, 1149, 2650, 5566
BstBI TTCGAA 3 cut(s) 97, 3258, 5005
BstDSI CCRYGG 2 cut(s) 1890, 1929
BstENI CCTNNNNNAGG 1 cut(s) 1691
BstFNI CGCG 2 cut(s) 23, 3123
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 5 cut(s) 40, 348, 2070, 3235, 4453
BstNI CCWGG 9 cut(s) 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349
BstSFI CTRYAG 2 cut(s) 1110, 5066
BstSLI GKGCMC 2 cut(s) 1924, 4426
BstUI CGCG 2 cut(s) 23, 3123
BstV2I GAAGAC 5 cut(s) 776, 2168, 4295, 4791, 5398
BstXI CCANNNNNNTGG 1 cut(s) 4502
BstZ17I GTATAC 1 cut(s) 4841
Bsu15I ATCGAT 1 cut(s) 3514
BsuI GTATCC 1 cut(s) 3382
BsuRI GGCC 9 cut(s) 48, 199, 552, 562, 2116, 2806, 3116, 4353, 4858
BsuTUI ATCGAT 1 cut(s) 3514
BtgI CCRYGG 2 cut(s) 1890, 1929
BtgZI GCGATG 3 cut(s) 3035, 4606, 5336
BtsI GCAGTG 3 cut(s) 649, 2606, 4055
BtsIMutI CAGTG 5 cut(s) 369, 649, 2221, 2606, 4055
BveI ACCTGC 2 cut(s) 1187, 5059
CaiI CAGNNNCTG 2 cut(s) 836, 2515
CciI TCATGA 4 cut(s) 886, 2616, 2959, 4333
CfoI GCGC 5 cut(s) 40, 348, 2070, 3235, 4453
Cfr9I CCCGGG 2 cut(s) 627, 858
ClaI ATCGAT 1 cut(s) 3514
CpoI CGGWCCG 1 cut(s) 154
CseI GACGC 5 cut(s) 13, 827, 2486, 3112, 3519
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CspI CGGWCCG 1 cut(s) 154
DraI TTTAAA 1 cut(s) 1603
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 2 cut(s) 3529, 5069
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 2 cut(s) 2804, 4856
Eam1104I CTCTTC 8 cut(s) 319, 373, 993, 1910, 2214, 3335, 3669, 4860
Eam1105I GACNNNNNGTC 2 cut(s) 3529, 5069
EarI CTCTTC 8 cut(s) 319, 373, 993, 1910, 2214, 3335, 3669, 4860
EciI GGCGGA 1 cut(s) 126
Ecl136II GAGCTC 4 cut(s) 82, 161, 1963, 4517
Eco130I CCWWGG 2 cut(s) 1485, 1929
Eco24I GRGCYC 6 cut(s) 65, 84, 163, 363, 1965, 4519
Eco31I GGTCTC 1 cut(s) 5077
Eco32I GATATC 2 cut(s) 4105, 4621
Eco47I GGWCC 5 cut(s) 154, 1322, 1410, 1435, 3370
Eco53kI GAGCTC 4 cut(s) 82, 161, 1963, 4517
Eco57I CTGAAG 6 cut(s) 465, 1514, 2061, 2162, 4999, 5571
Eco88I CYCGRG 3 cut(s) 627, 858, 4431
EcoICRI GAGCTC 4 cut(s) 82, 161, 1963, 4517
EcoNI CCTNNNNNAGG 1 cut(s) 1691
EcoO109I RGGNCCY 1 cut(s) 3115
EcoRII CCWGG 9 cut(s) 219, 552, 1260, 2365, 2761, 3111, 3707, 3904, 4347
EcoRV GATATC 2 cut(s) 4105, 4621
EcoT14I CCWWGG 2 cut(s) 1485, 1929
EcoT22I ATGCAT 3 cut(s) 868, 3872, 4914
EcoT38I GRGCYC 6 cut(s) 65, 84, 163, 363, 1965, 4519
ErhI CCWWGG 2 cut(s) 1485, 1929
Esp3I CGTCTC 2 cut(s) 1342, 4036
FaqI GGGAC 7 cut(s) 106, 447, 760, 841, 1594, 2838, 4764
FauI CCCGC 2 cut(s) 57, 551
FauNDI CATATG 5 cut(s) 2190, 3696, 4089, 4861, 5579
FbaI TGATCA 6 cut(s) 427, 1173, 2101, 2242, 3271, 4768
FblI GTMKAC 1 cut(s) 4840
FriOI GRGCYC 6 cut(s) 65, 84, 163, 363, 1965, 4519
FspI TGCGCA 1 cut(s) 3234
GlaI GCGC 5 cut(s) 39, 347, 2069, 3234, 4452
GsuI CTGGAG 8 cut(s) 101, 1025, 1449, 1882, 2264, 4151, 4481, 4533
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 9 cut(s) 48, 199, 552, 562, 2116, 2806, 3116, 4353, 4858
HapII CCGG 7 cut(s) 628, 859, 906, 993, 1637, 2341, 3386
HgaI GACGC 5 cut(s) 13, 827, 2486, 3112, 3519
HhaI GCGC 5 cut(s) 40, 348, 2070, 3235, 4453
Hin1I GRCGYC 3 cut(s) 5, 225, 2497
Hin6I GCGC 5 cut(s) 38, 346, 2068, 3233, 4451
HinP1I GCGC 5 cut(s) 38, 346, 2068, 3233, 4451
HincII GTYRAC 2 cut(s) 3702, 4573
HindII GTYRAC 2 cut(s) 3702, 4573
HindIII AAGCTT 3 cut(s) 1760, 2927, 3401
HpaI GTTAAC 1 cut(s) 3702
HpaII CCGG 7 cut(s) 628, 859, 906, 993, 1637, 2341, 3386
Hpy99I CGWCG 2 cut(s) 115, 154
HpyCH4IV ACGT 5 cut(s) 225, 574, 1074, 3669, 4575
HpySE526I ACGT 5 cut(s) 225, 574, 1074, 3669, 4575
Hsp92I GRCGYC 3 cut(s) 5, 225, 2497
HspAI GCGC 5 cut(s) 38, 346, 2068, 3233, 4451
Kpn2I TCCGGA 1 cut(s) 2340
KpnI GGTACC 1 cut(s) 942
Ksp22I TGATCA 6 cut(s) 427, 1173, 2101, 2242, 3271, 4768
KspAI GTTAAC 1 cut(s) 3702
LguI GCTCTTC 2 cut(s) 993, 3669
MaeII ACGT 5 cut(s) 225, 574, 1074, 3669, 4575
MlsI TGGCCA 1 cut(s) 4858
MluI ACGCGT 1 cut(s) 3121
MluNI TGGCCA 1 cut(s) 4858
MlyI GAGTC 4 cut(s) 2209, 4430, 4933, 5516
MmeI TCCRAC 5 cut(s) 132, 1246, 1538, 1879, 3333
Mox20I TGGCCA 1 cut(s) 4858
Mph1103I ATGCAT 3 cut(s) 868, 3872, 4914
MroI TCCGGA 1 cut(s) 2340
MroXI GAANNNNTTC 3 cut(s) 1076, 3627, 5405
MscI TGGCCA 1 cut(s) 4858
MslI CAYNNNNRTG 5 cut(s) 3007, 3183, 3865, 4500, 5562
Msp20I TGGCCA 1 cut(s) 4858
MspA1I CMGCKG 3 cut(s) 52, 395, 548
MspCI CTTAAG 2 cut(s) 2053, 4036
MspI CCGG 7 cut(s) 628, 859, 906, 993, 1637, 2341, 3386
MssI GTTTAAAC 1 cut(s) 1603
MvaI CCWGG 9 cut(s) 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349
MvnI CGCG 2 cut(s) 23, 3123
NciI CCSGG 6 cut(s) 628, 629, 859, 860, 993, 3386
NcoI CCATGG 1 cut(s) 1929
NdeI CATATG 5 cut(s) 2190, 3696, 4089, 4861, 5579
NlaIV GGNNCC 6 cut(s) 940, 1377, 1627, 1801, 3000, 3325
NmeAIII GCCGAG 1 cut(s) 5248
NmuCI GTSAC 3 cut(s) 4871, 4928, 5044
NsbI TGCGCA 1 cut(s) 3234
NsiI ATGCAT 3 cut(s) 868, 3872, 4914
NspV TTCGAA 3 cut(s) 97, 3258, 5005
PaeI GCATGC 2 cut(s) 1246, 4916
PaeR7I CTCGAG 1 cut(s) 4431
PagI TCATGA 4 cut(s) 886, 2616, 2959, 4333
PaqCI CACCTGC 1 cut(s) 1187
PciI ACATGT 2 cut(s) 3008, 5392
PciSI GCTCTTC 2 cut(s) 993, 3669
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 3 cut(s) 1076, 3627, 5405
PflFI GACNNNGTC 1 cut(s) 1211
PflMI CCANNNNNTGG 1 cut(s) 2515
PfoI TCCNGGA 2 cut(s) 991, 3384
PleI GAGTC 4 cut(s) 2208, 4430, 4933, 5515
PmeI GTTTAAAC 1 cut(s) 1603
PpsI GAGTC 4 cut(s) 2208, 4430, 4933, 5515
PscI ACATGT 2 cut(s) 3008, 5392
PsiI TTATAA 4 cut(s) 521, 2384, 2453, 2985
Psp124BI GAGCTC 4 cut(s) 84, 163, 1965, 4519
Psp1406I AACGTT 4 cut(s) 574, 1074, 3669, 4575
Psp6I CCWGG 9 cut(s) 219, 552, 1260, 2365, 2761, 3111, 3707, 3904, 4347
PspGI CCWGG 9 cut(s) 219, 552, 1260, 2365, 2761, 3111, 3707, 3904, 4347
PspN4I GGNNCC 6 cut(s) 940, 1377, 1627, 1801, 3000, 3325
PsrI GAACNNNNNNTAC 2 cut(s) 2614, 2646
PstI CTGCAG 2 cut(s) 1114, 5070
PstNI CAGNNNCTG 2 cut(s) 836, 2515
PsyI GACNNNGTC 1 cut(s) 1211
PvuII CAGCTG 2 cut(s) 395, 548
RseI CAYNNNNRTG 5 cut(s) 3007, 3183, 3865, 4500, 5562
Rsr2I CGGWCCG 1 cut(s) 154
RsrII CGGWCCG 1 cut(s) 154
SacI GAGCTC 4 cut(s) 84, 163, 1965, 4519
SapI GCTCTTC 2 cut(s) 993, 3669
SchI GAGTC 4 cut(s) 2209, 4430, 4933, 5516
SfcI CTRYAG 2 cut(s) 1110, 5066
Sfr274I CTCGAG 1 cut(s) 4431
SfuI TTCGAA 3 cut(s) 97, 3258, 5005
SinI GGWCC 5 cut(s) 154, 1322, 1410, 1435, 3370
SlaI CTCGAG 1 cut(s) 4431
SmaI CCCGGG 2 cut(s) 629, 860
SmiMI CAYNNNNRTG 5 cut(s) 3007, 3183, 3865, 4500, 5562
SpeI ACTAGT 2 cut(s) 2750, 5383
SphI GCATGC 2 cut(s) 1246, 4916
SsiI CCGC 8 cut(s) 23, 50, 137, 558, 679, 1258, 3705, 4568
SspI AATATT 2 cut(s) 2775, 4216
SstI GAGCTC 4 cut(s) 84, 163, 1965, 4519
StyI CCWWGG 2 cut(s) 1485, 1929
TaiI ACGT 5 cut(s) 228, 577, 1077, 3672, 4578
TaqII GACCGA 1 cut(s) 171
TatI WGTACW 5 cut(s) 961, 1149, 2650, 2767, 5566
TscAI CASTG 5 cut(s) 376, 656, 2221, 2606, 4062
TseFI GTSAC 3 cut(s) 4871, 4928, 5044
Tsp45I GTSAC 3 cut(s) 4871, 4928, 5044
TspGWI ACGGA 2 cut(s) 272, 3527
TspMI CCCGGG 2 cut(s) 627, 858
TspRI CASTG 5 cut(s) 376, 656, 2221, 2606, 4062
Tth111I GACNNNGTC 1 cut(s) 1211
Van91I CCANNNNNTGG 1 cut(s) 2515
Vha464I CTTAAG 2 cut(s) 2053, 4036
VneI GTGCAC 2 cut(s) 1920, 4422
VpaK11BI GGWCC 5 cut(s) 154, 1322, 1410, 1435, 3370
XagI CCTNNNNNAGG 1 cut(s) 1691
XbaI TCTAGA 2 cut(s) 590, 2299
XhoI CTCGAG 1 cut(s) 4431
XmaI CCCGGG 2 cut(s) 627, 858
XmiI GTMKAC 1 cut(s) 4840
XmnI GAANNNNTTC 3 cut(s) 1076, 3627, 5405
ZraI GACGTC 1 cut(s) 226
Zsp2I ATGCAT 3 cut(s) 868, 3872, 4914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.