Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

4662289 .. 4664520

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG054100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCCTGGGTGGGCCTCATTCTGAACGTTATGTTCTCGATTCTAGAGATTACATTCAGTCTTCTTTTTTCTTTTGTGATCGCTTTCGTACCAGACACTCTGAGTGCAGCACCTGATAAAGCATCTGTTCTGTCCCAGAATATGTACAACGCCTATCTTCAGAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTATGAGCGTGCTTAGTCCATACTGCCTGGTTGGGTTACATGAGCTTTCGCATGATAGTAACCAAACTGCACAAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTGTAAGTGGAATTTATCGGAAGGAGCCAGAGCAGTTGTTTGGCAATGACGTCTTGTGGACATTTTTGACCTTTGCTGGAGGGGACGATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

167

Amino Acids

18.54

Weight (kDa)

4.85

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
AatII	GACGTC	1 cut(s)	414
Acc36I	ACCTGC	1 cut(s)	190
AclI	AACGTT	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	372, 454
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	3 cut(s)	90, 146, 493
AgsI	TTSAA	2 cut(s)	461, 481
AjnI	CCWGG	2 cut(s)	5, 270
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	202, 352
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	3, 13
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	372, 454
AspS9I	GGNCC	2 cut(s)	13, 332
AsuHPI	GGTGA	3 cut(s)	163, 171, 186
AvaII	GGWCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	7, 272
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	202, 352
BfaI	CTAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	7, 272
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	13, 332
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	7, 272
BmsI	GCATC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	7, 272
BseDI	CCNNGG	1 cut(s)	6
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	92, 479
BseXI	GCAGC	1 cut(s)	119
BsgI	GTGCAG	2 cut(s)	126, 297
BshFI	GGCC	2 cut(s)	5, 15
BslFI	GGGAC	2 cut(s)	118, 458
BsmAI	GTCTC	2 cut(s)	202, 352
BsmFI	GGGAC	2 cut(s)	118, 458
BsnI	GGCC	2 cut(s)	5, 15
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	78, 168
BspANI	GGCC	2 cut(s)	5, 15
BspCNI	CTCAG	2 cut(s)	93, 480
BspLI	GGNNCC	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	412
BsrGI	TGTACA	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	78, 168
BssNI	GRCGYC	1 cut(s)	411
Bst2UI	CCWGG	2 cut(s)	7, 272
BstACI	GRCGYC	1 cut(s)	411
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	4 cut(s)	101, 257, 488, 496
BstKTI	GATC	2 cut(s)	81, 171
BstMAI	GTCTC	2 cut(s)	202, 352
BstMBI	GATC	2 cut(s)	78, 168
BstNI	CCWGG	2 cut(s)	7, 272
BstSCI	CCNGG	2 cut(s)	5, 270
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	5, 15
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	254
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	13, 332
Csp6I	GTAC	3 cut(s)	89, 145, 492
CviAII	CATG	2 cut(s)	284, 296
CviJI	RGCY	7 cut(s)	5, 15, 245, 289, 320, 388, 473
CviKI_1	RGCY	7 cut(s)	5, 15, 245, 289, 320, 388, 473
CviQI	GTAC	3 cut(s)	89, 145, 492
DdeI	CTNAG	4 cut(s)	101, 257, 488, 496
DpnI	GATC	2 cut(s)	80, 170
DpnII	GATC	2 cut(s)	78, 168
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	5, 270
FaeI	CATG	2 cut(s)	287, 299
FaiI	YATR	8 cut(s)	32, 143, 248, 265, 285, 297, 485, 502
FaqI	GGGAC	2 cut(s)	118, 458
FatI	CATG	2 cut(s)	283, 295
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	5, 15
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	287, 299
HinfI	GANTC	2 cut(s)	40, 222
HphI	GGTGA	3 cut(s)	163, 171, 186
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	5 cut(s)	24, 102, 162, 325, 381
Hpy188III	TCNNGA	3 cut(s)	37, 44, 478
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	1 cut(s)	376
HpyCH4IV	ACGT	2 cut(s)	27, 411
HpyCH4V	TGCA	2 cut(s)	107, 314
HpyF3I	CTNAG	4 cut(s)	101, 257, 488, 496
HpySE526I	ACGT	2 cut(s)	27, 411
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	287, 299
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	78, 168
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	27, 411
MaeIII	GTNAC	2 cut(s)	279, 302
MalI	GATC	2 cut(s)	80, 170
MboI	GATC	2 cut(s)	78, 168
MboII	GAAGA	2 cut(s)	53, 149
MluCI	AATT	3 cut(s)	230, 372, 454
MnlI	CCTC	5 cut(s)	26, 234, 331, 345, 434
MseI	TTAA	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	7, 272
MvaI	CCWGG	2 cut(s)	7, 272
NdeII	GATC	2 cut(s)	78, 168
NlaIII	CATG	2 cut(s)	287, 299
NlaIV	GGNNCC	1 cut(s)	387
PaqCI	CACCTGC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	40, 222
PflFI	GACNNNGTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	109
Psp1406I	AACGTT	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	5, 270
PspGI	CCWGG	2 cut(s)	5, 270
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	13, 332
PstNI	CAGNNNCTG	1 cut(s)	113
PsyI	GACNNNGTC	1 cut(s)	213
RsaI	GTAC	3 cut(s)	90, 146, 493
RsaNI	GTAC	3 cut(s)	89, 145, 492
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	78, 168
Sau96I	GGNCC	2 cut(s)	13, 332
ScrFI	CCNGG	2 cut(s)	7, 272
SetI	ASST	9 cut(s)	30, 115, 176, 184, 217, 291, 414, 434, 497
SfaNI	GCATC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	3 cut(s)	230, 372, 454
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	5, 270
TaiI	ACGT	2 cut(s)	30, 414
TaqI	TCGA	1 cut(s)	38
TasI	AATT	3 cut(s)	230, 372, 454
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	40, 222
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseI	GCWGC	1 cut(s)	107
Tth111I	GACNNNGTC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	2 cut(s)	372, 454
XbaI	TCTAGA	1 cut(s)	43
XspI	CTAG	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.