Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002566.1

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Forward (+)

26847 .. 27796

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002566.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtgcaacgcctatcttcaaaagttgatcacctattcacctgcttcttactcacccacttgccagagacaaggtcaaagaatcaaagaattaaaggagagggctatgagcgtgcttagtccatactgcctggttgggtcacatgagctttcgcatgatagtaaccaaactgcacaagcctctgaaagtggtcctctaaagtttgtgagtggaatttatcggaaggagccagagcaattgtctggcaatgacgccttgtggacatttgtgaactttgctggagagtacgatacaaattttcaaactcttgtggctctcttgaatatgctgagtaccttggcttctagtcaagaaggtgctgcaacggttttggagttacttcagggcaaagtgtttcgttctgttgggtggagcaccttgtttgatagcttgtcaatttataaagagaagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

151

Amino Acids

16.8

Weight (kDa)

6.1

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	213, 295
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	287, 334
AgsI	TTSAA	3 cut(s)	20, 302, 322
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	148, 429
AluI	AGCT	2 cut(s)	148, 429
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	213, 295
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	22, 30, 45
AvaII	GGWCC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	325, 357
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	416
BsmAI	GTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	116, 329
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	286, 333
CviAII	CATG	2 cut(s)	143, 155
CviJI	RGCY	7 cut(s)	104, 148, 179, 229, 314, 341, 429
CviKI_1	RGCY	7 cut(s)	104, 148, 179, 229, 314, 341, 429
CviQI	GTAC	2 cut(s)	286, 333
DdeI	CTNAG	2 cut(s)	116, 329
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	146, 158
FaiI	YATR	6 cut(s)	107, 124, 144, 156, 326, 441
FatI	CATG	2 cut(s)	142, 154
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	146, 158
HinfI	GANTC	1 cut(s)	81
HphI	GGTGA	3 cut(s)	22, 30, 45
Hpy166II	GTNNAC	2 cut(s)	261, 271
Hpy188I	TCNGA	2 cut(s)	184, 222
Hpy188III	TCNNGA	2 cut(s)	319, 350
Hpy8I	GTNNAC	2 cut(s)	261, 271
HpyAV	CCTTC	2 cut(s)	217, 347
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	6, 173, 362
HpyF3I	CTNAG	2 cut(s)	116, 329
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	146, 158
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	226, 411
LpnPI	CCDG	8 cut(s)	54, 77, 116, 143, 228, 243, 264, 368
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	3 cut(s)	138, 161, 375
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	8
MfeI	CAATTG	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	5 cut(s)	89, 213, 236, 295, 435
MnlI	CCTC	3 cut(s)	93, 190, 204
MseI	TTAA	2 cut(s)	92, 454
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	146, 158
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	72
RsaI	GTAC	2 cut(s)	287, 334
RsaNI	GTAC	2 cut(s)	286, 333
SaqAI	TTAA	2 cut(s)	92, 454
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	8 cut(s)	35, 43, 76, 150, 338, 358, 419, 431
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	5 cut(s)	89, 213, 236, 295, 435
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	367
TasI	AATT	5 cut(s)	89, 213, 236, 295, 435
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	92, 454
Tru9I	TTAA	2 cut(s)	92, 454
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	138
Tth111I	GACNNNGTC	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	213, 295
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.