RLG00000015961

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001803
Physical Location & Seq
Reverse (-)
2771518 .. 2788727
17210 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015961

Sequence Viewer

Length: 5436 bp
ATGACGCCGAAGCAGCTCCTCGCGGTAATCGAATCGGCTCTACTAGGCCCGCTGCCTCCGAGCCCATCTCAGAGAGTGGAGCTCATGCACGCCATTCGAAGCTCTCTCTCGTCGCTCCAGTCCCTCCTCTCATATCCGCCTCCGAAGCCGTCAGACCGAGCTCAAGTTCAGTCCAAAGAAGTTAGGCTTCCGAATGGGCCACCGATTTTGCTTGATGACCAGGACGTCCAGATTGCTTTGAAGTTAAGTGATGACCTCCATCTTAACGAGATTGATTGTGTCCGTTTGATTGTCTCTGCAAATCAAGAGTGGGGCTTAATGGGAAGAGAGCCACTAGAAATTTTGCGCCTTGCAACAGGGCTCTGGTACACTGAGAGAAGAGATCTATTAACAGCTGTCTATACACTTTTAAGGGCTGTTGTGCTTGATCAGGGACTTGAAGCTGAAGTTGTATCTGACATTCAAAAATATCTGGAAAATCTTATCAATAATGGGCTTAGACAGAGGTTAATATCTCTTATAAAGGAACTTAATCGAGAAGAACCAGCTGGCCTGGGCGGGCCTCATTCTGAACGTTATGTTCTCGATTCTAGAGGTGCTCTTGTTGTACGACAAGCTGTGGTTTCCCGGGAAAGGCTCATACTTGGACACTGCCTCGTTCTTTCTATTCTGGTTGTGCGGACAAGTCCAAAGGATGTAAAGGATATATTTCTCGTGTATAAAGATAGTGCTTCTGAACTTAGTGGGACTAATGACACTATAAAACGCCAGATTACATTCAGTCTTCTTTTTTCTCTTGTGATTGCTTTCGTATCAGACGCTCTGAGTGCAGCACCTGATAAAGCATCTGTCCTGTCCCAGGATGCATCTTTTAGACATGAATTTCATGAAATCGTAATGGCAGCCGGAAATGATCCAAATGTTGAGGGCTTTGTCGGTACCATAAGGCTTGCTTGGGCTGTACACTTGATGTTAATACAAGATGCTGTTCCCGGAAGGGATGCTATTTCAAGTGCTTCATCGAGTGATTTGGGTTATCTCCAGTCGTGCTTAGAAGTGGTTTTTTCAAAGAACGTTTTCCAGTTTATATTAGATGAAGTTCTTAAAACTGCAGCTTATGCGAATGATGACGAGGATATAAGCTATATGTATGATGCTTATCTTCACAAGTTGATCACCTGCTTCTTATCTCACCCACTTGCCAGAGACAAGGTCAAAGAATCAAAGGAGAGGGCAATGAGCATGCTTAGTCCATATCGCCTGGTTGGATCACATGATTTTTCGCATGATAGTAACCAAACTTCACAAGCCTCTGAAAATGGTCCACTACCATTCGTCTCTCTTTTGGAGTTTGTGAGTGGAATTTATCAGAAGGAACCAGAGCTGTTGTCTGGCAATGATGTCTTGTGGACCTTTGTGAACTTTGCTGGAGAGGACCATACAAATTTTCAAACCCTTGTGGCTTTCTTGAATATGCTGAGTACCTTGGCTTCTAGTCAAGAAGGTGCTGCAAAGGTTTTTGAGTTACTTCAGGGAAAAGTGTTTCGATCTGTTGGTTGGAGCACTTTGTTTGATAGCTTATCAATTTATGACGAGAAGTTTAAACAGTCTCTTCAAACTGCTGGTGCCATGTTACCGGAACTTCCAGAGGGTGATGCAAAAGCACTCGTTGCTTATTTGAATGTCCTTCAAAAGGTTGTGGAAAATGGAAATCCCCTTGAACGAAAGAACTGGTTTCCTGATATTGAGCCTTTGTTTAAGCTTCTTGGTTATGAAAATGTGCCTCCTTATCTAAAGGGTGCCTTGCGTAATGCAATAACAACTTTTGTATATGTCTCTCCTGTCCTAAAAGATACAGTCTGGAGTTATCTTGAGCAGTATGATCTCCCCGTGGTTGTTGGACCTCATGTTGGGAAGAGTGCACAGCCCATGGCTGCACAGTTTGAGCTCAATGAAATAGAAGCAAGGAGAGAGCAATATCCTTCAACAATATCCTTCCTTAACCTGTTAAATGCTCTTATATCTGAAGAAAGAGACTTAAGTGATAGAGGGCGCAGATTCATTGGAATTTTCAGGTTCATTTATGATCATGTTTTTAGGCCATTCCCTCAAAGAGCCTATGCCGATCCTTGTGAGAAATGGCAATTAGTTGTTGCATGTCTTCAGCACTTTCATATGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACTGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAAGACTTTATGAGTGGAAAATCTGTTTTCCGGAACATCATGGGCATCCTTCTGCCAGGTGTCAATACCATTATAACTGAACGAACAAATCAAGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTTTCATTGGAGATTATAATCCTTGTCTTGGAGAAGGATTTGCTTCTTTCTGATTTCTGGCGTCCTCTTTACCAGCCTCTGGATGTTATACTCTCTCAAGATCATAATCAAATTGTAGCTTTATTGGAATATGTCAGATATGATTTTCGACCACAAATTCAGCAGTGCTCTGTCAAAATCATGAGTATATTAAGTTCTCGCATGGTCGGGCTTGTACAATTACTGCTAAAGTCAAATGCTGCAAGCTGTTTGATTGAGGATTATGCAGCCTGCCTTGAATTACGATCAGAGGATTCTCAGGTGATAGAGAACACTGGTGATGATCCAGGTGTACTAATATTGCAGCTTCTAATTGACAATATCAGTCGGCCAGCTCCCAATATCACCCATTTGCTTCTCAAATTTGATCTTGACAGTCCCATTGAGCGTACTGTGCTACAACCAAAATTTCATTACAGTTGTTTGAAGGTTATCCTTGAGATCTTGGAGAAGCTTTCAAAGCCTGATGTGAATATGTTACTTCATGAATTTGGTTTTCAGCTCCTTTATAAATTGTGTGTGGATCCACTAACATGTGATCCTACGATGGATCTGTTGAGTAGTAAGAAGTATCAGTTTTTTGTAAAGCACCTAGATACGATTGGGGTTGCCCCACTTCCTAAAAGGAAGAACAACCAGGCTCTGCGCGTCAGTTCCCTTCATCAGAGAGCTTGGCTGTTGAAACTACTAGCTGTTGAACTTCATGTTGGTGATGTCAATAAATCCACTCACCTAGAAACATCTCGTAGCATCCTTGCGCATCTTTTTGGGCAGCAAACTTTCGAAACTGGAATTGATCACCTCATGTCTCATTCGTTTTCTCCTCAAGATGGTGTTGAACATGCTGGAACCCAAACTGTTGGGAAGAGTAAGGTGTTGGAGTTGCTTGAAGTGGTTCAGTTTAGATCCCCGGATACAAACACAAAGCTTTCTGAGATTGTTTCCAATACGAAATATGATTTGTTGGCAGAGGATGTAGTTTGTAATCCTACTACTTCTGGAAAGAGTGGTGTCCATTACTATTCAGAGCGTGGTGATCGATTGATAGACCTTGCGTCATTCCGTGATAAACTTTGGCAGAAATTCAAGGCTGTTTATCCCCACTTGAGTAACATTGGAAGTGAAGTAGAGCTGAACGATGCAAAAGAAACAATTCAACAGTTGTTGAGATGGGGATGGAAGAACAATAAGAACGTTGAAGAGCAAGCTGCCCAACTTCATATGTTAACCGCCTGGTCACAAGTTGTTGAGATCTCTGCTGCCCGAAGAATATCATCACTTGGACATCAATCTGAACTTCTATATCAGATTCTTGTAGCTGCTTTGACTGCTTCTGCTTCTCAAGATTGTTCATTAAAGATGGCATTTTTGTTGTGTCAGGTTGCACTGACATGCATGGCAAAGTTACGAGATGAAAGATTTTTATTCCCTGGTGGCTTTAGTTCTGATAGTCAGGCGTGTCTTGATATTATCATGGCAAAACAATTACCAAATGCAGCTTGTCATTCAATCCTGTTTAGGCTCATATTGGCAATTCTCAGACATGAATCATCAGAAGCCTTAAGGAGACGGCAATATGCACTGCTCCTCAGCTATTTTCAGTATTGTCAGCATATGCTTGATCCAAATATCCCATCAACAGTTCTGCAATTTTTGTTGCTTGATGAGCAAGAGGGTGAAGATCTGGATCTCCAGAAGATCAATCGAGAACAAGCAGAACTTGCCCGTGCCAATTTCAATATTTTAAGAAAAGAAGCTCAATCTATTTTGGATTTGGTAATAAAAGATGCTACTCAAGGAAGTGAACTTGGGAAGACTATGGCACTCTATGTTTTGGATGCAATCATCTGTGTAGATCATGATAGATATTTCCTGGGCCAACTTCAAAGCAGGGGTTTCCTAAGATCTTGTCTTACAAACATCAGCAGCTTATCTTATCAGGATGGTGCACATTCTCGAGACTCAATGCAGCGAGCGCAAACTCTGGAGGCTGAACTTGCTTTGCTTTTGAGAATAAGCCATAAGTATGGGAAATCTGGAGCTCAGGTTATCTTTACAATGGGGGCTTTGGAGCATATTGCTTCATGCAGGGCAGTCAACGTTTTCGGAAGTTTGCGATGGATTGACACTAAGAACCAAAGAAATGTTTCTGTGGATATCAACAAGCAAAGGATGATTGTAACCCCTATTCTGAGATTGGTGTTTTCTCTGTTGTCTCTAGTTGATACATCCGAATTTTATGAGGTGAAGAATAAAGTTGTTCGGGAAGTCATAGAATTTGTCAAGGGACATAGATCACTTTTTGATCATGTTCTTCGGGAAGACATTTCCCAAGCTGATGAGTTGGTGATGGAGCAGATAAACCTTGTTGTTGGTATACTAAGCAAGGTTTGGCCATATGAAGAGAGTGACGAATCTGGCTTTGTTCAAGGTCTTTTTTGTTTGATGCATGCTCTTTTCTCTCGTGACTGTGAGACTCTAAGTTCTGCTCAATCAGTTCGATCTGTTGAGAATCACAGGAAAACAGAGCTTAACTCATTTCGAATATGCTTCACCTCTTACCAACTTGCTTTCTTACAGGTCTCAGACATGCCTCCTGATTACAATGCTGCTGTTTCCTTTCAACAGCCAACATTGAGTTTGCTTGGATCTTTTCTCACTTCTTTAACAAGTGCTCTTGAAAGAGCTGCTGAGGAAAAATCCTTACTTCTTAATAGGATTCGAGACATAAATGAATTATCAAGACAGGAGGTGGATGAAATTATCAATATGTATGCTCGGCAAGTCTATGTTTCATCATCTGACAATATACAGAAAAGGTTTGTTTCTCAGAGAATTTGGTTTAGCTGTGGTGCAGTTTACTTTCAAATTTTCAATGTGAAATTGGATTATGACAAAATAGGCCACAATCTTAAAGTGTTTCGAAGATTAGTGACTTCGCTCAAGGAAATGACGATCCAAAAGTTGTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

1812

Amino Acids

204.47

Weight (kDa)

5.7

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup192 PF11894 26 - 1601 8.5e-103 Nuclear pore complex scaffold, nucleoporins 186/192/205
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 521, 2369, 2438, 2970
AarI CACCTGC 1 cut(s) 1187
AasI GACNNNNNNGTC 1 cut(s) 224
AatII GACGTC 1 cut(s) 228
Acc16I TGCGCA 1 cut(s) 3219
Acc36I ACCTGC 1 cut(s) 1187
Acc65I GGTACC 1 cut(s) 938
AccB1I GGYRCC 3 cut(s) 938, 1625, 1799
AccB7I CCANNNNNTGG 1 cut(s) 2500
AccI GTMKAC 1 cut(s) 4837
AccII CGCG 2 cut(s) 23, 3108
AccIII TCCGGA 1 cut(s) 2325
AciI CCGC 6 cut(s) 23, 50, 137, 558, 679, 3690
AclI AACGTT 4 cut(s) 574, 1074, 3654, 4560
AcoI YGGCCR 2 cut(s) 2789, 4853
AcuI CTGAAG 4 cut(s) 465, 1514, 2046, 2147
AcyI GRCGYC 3 cut(s) 5, 225, 2482
AfaI GTAC 9 cut(s) 368, 609, 940, 963, 1483, 2393, 2637, 2754, 2851
AfiI CCNNNNNNNGG 7 cut(s) 633, 859, 1693, 1910, 2449, 2500, 3290
AflII CTTAAG 2 cut(s) 2038, 4021
AflIII ACRYGT 1 cut(s) 2993
AhdI GACNNNNNGTC 1 cut(s) 3514
AjuI GAANNNNNNNTTGG 2 cut(s) 3150, 3182
Alw44I GTGCAC 2 cut(s) 1920, 4407
AlwNI CAGNNNCTG 3 cut(s) 836, 2500, 3103
Ama87I CYCGRG 2 cut(s) 627, 4416
Aor13HI TCCGGA 1 cut(s) 2325
AoxI GGCC 9 cut(s) 46, 197, 550, 560, 2099, 2789, 4336, 4853, 5362
ApaLI GTGCAC 2 cut(s) 1920, 4407
Asp700I GAANNNNTTC 4 cut(s) 1076, 3354, 3612, 4606
Asp718I GGTACC 1 cut(s) 938
AspLEI GCGC 5 cut(s) 348, 2055, 3108, 3220, 4438
AspS9I GGNCC 8 cut(s) 47, 197, 560, 1322, 1410, 1435, 1901, 4336
AsuC2I CCSGG 4 cut(s) 628, 629, 993, 3371
AsuII TTCGAA 4 cut(s) 97, 3243, 5002, 5383
AvaI CYCGRG 2 cut(s) 627, 4416
AvaII GGWCC 4 cut(s) 1322, 1410, 1435, 1901
BaeGI GKGCMC 2 cut(s) 1924, 4411
BalI TGGCCA 1 cut(s) 4855
BamHI GGATCC 1 cut(s) 2983
BanI GGYRCC 3 cut(s) 938, 1625, 1799
BanII GRGCYC 6 cut(s) 65, 84, 163, 363, 1950, 4504
BarI GAAGNNNNNNTAC 4 cut(s) 1285, 1317, 1474, 1506
BauI CACGAG 2 cut(s) 713, 4923
BbsI GAAGAC 5 cut(s) 776, 2153, 4280, 4788, 5421
BbvCI CCTCAGC 2 cut(s) 4049, 5151
BceAI ACGGC 2 cut(s) 133, 4046
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciVI GTATCC 1 cut(s) 3367
BclI TGATCA 6 cut(s) 427, 1173, 2086, 2227, 3256, 4765
BcnI CCSGG 4 cut(s) 628, 629, 993, 3371
BfaI CTAG 9 cut(s) 44, 335, 591, 1494, 2285, 3053, 3149, 3194, 4679
BfmI CTRYAG 1 cut(s) 1110
BfrI CTTAAG 2 cut(s) 2038, 4021
BfuAI ACCTGC 1 cut(s) 1187
BfuI GTATCC 1 cut(s) 3367
BglII AGATCT 5 cut(s) 382, 2901, 3711, 4141, 4364
Bme18I GGWCC 4 cut(s) 1322, 1410, 1435, 1901
BmeRI GACNNNNNGTC 1 cut(s) 3514
BmeT110I CYCGRG 2 cut(s) 627, 4416
BmgT120I GGNCC 8 cut(s) 47, 197, 560, 1322, 1410, 1435, 1901, 4336
BmiI GGNNCC 6 cut(s) 940, 1377, 1627, 1801, 2985, 3310
BpiI GAAGAC 5 cut(s) 776, 2153, 4280, 4788, 5421
BplI GAGNNNNNCTC 6 cut(s) 52, 84, 66, 98, 4979, 5011
BpmI CTGGAG 8 cut(s) 101, 1025, 1449, 1882, 2249, 4136, 4466, 4518
Bpu10I CCTNAGC 3 cut(s) 4049, 4503, 5151
Bpu14I TTCGAA 4 cut(s) 97, 3243, 5002, 5383
BpuEI CTTGAG 9 cut(s) 147, 1892, 2502, 2918, 3270, 3586, 3786, 4239, 5387
BpuMI CCSGG 4 cut(s) 628, 629, 993, 3371
Bsa29I ATCGAT 1 cut(s) 3499
BsaBI GATNNNNATC 4 cut(s) 1158, 2438, 2526, 4146
BsaHI GRCGYC 3 cut(s) 5, 225, 2482
BsaI GGTCTC 1 cut(s) 5047
BsaJI CCNNGG 9 cut(s) 553, 627, 858, 1485, 1890, 1929, 3369, 3889, 4333
BsaWI WCCGGW 2 cut(s) 1636, 2325
BsaXI ACNNNNNCTCC 2 cut(s) 4491, 4521
Bsc4I CCNNNNNNNGG 7 cut(s) 633, 859, 1693, 1910, 2449, 2500, 3290
Bse1I ACTGG 6 cut(s) 118, 1042, 1081, 1736, 2740, 3253
Bse3DI GCAATG 2 cut(s) 1242, 1402
Bse8I GATNNNNATC 4 cut(s) 1158, 2438, 2526, 4146
BseAI TCCGGA 1 cut(s) 2325
BseCI ATCGAT 1 cut(s) 3499
BseDI CCNNGG 9 cut(s) 553, 627, 858, 1485, 1890, 1929, 3369, 3889, 4333
BseJI GATNNNNATC 4 cut(s) 1158, 2438, 2526, 4146
BseLI CCNNNNNNNGG 7 cut(s) 633, 859, 1693, 1910, 2449, 2500, 3290
BseMI GCAATG 2 cut(s) 1242, 1402
BseNI ACTGG 6 cut(s) 118, 1042, 1081, 1736, 2740, 3253
BseRI GAGGAG 4 cut(s) 8, 116, 3273, 4037
BseSI GKGCMC 2 cut(s) 1924, 4411
BsgI GTGCAG 3 cut(s) 849, 1920, 5334
Bsh1236I CGCG 2 cut(s) 23, 3108
BshFI GGCC 9 cut(s) 48, 199, 552, 562, 2101, 2791, 4338, 4855, 5364
BshNI GGYRCC 3 cut(s) 938, 1625, 1799
BshVI ATCGAT 1 cut(s) 3499
BsiHKCI CYCGRG 2 cut(s) 627, 4416
BsiSI CCGG 6 cut(s) 628, 906, 993, 1637, 2326, 3371
BslFI GGGAC 6 cut(s) 106, 447, 760, 841, 2823, 4761
BslI CCNNNNNNNGG 7 cut(s) 633, 859, 1693, 1910, 2449, 2500, 3290
BsmBI CGTCTC 2 cut(s) 1342, 4021
BsmFI GGGAC 6 cut(s) 106, 447, 760, 841, 2823, 4761
BsnI GGCC 9 cut(s) 48, 199, 552, 562, 2101, 2791, 4338, 4855, 5364
Bso31I GGTCTC 1 cut(s) 5047
BsoBI CYCGRG 2 cut(s) 627, 4416
Bsp119I TTCGAA 4 cut(s) 97, 3243, 5002, 5383
Bsp13I TCCGGA 1 cut(s) 2325
Bsp1407I TGTACA 2 cut(s) 961, 2635
Bsp19I CCATGG 1 cut(s) 1929
BspACI CCGC 6 cut(s) 23, 50, 137, 558, 679, 3690
BspANI GGCC 9 cut(s) 48, 199, 552, 562, 2101, 2791, 4338, 4855, 5364
BspDI ATCGAT 1 cut(s) 3499
BspEI TCCGGA 1 cut(s) 2325
BspFNI CGCG 2 cut(s) 23, 3108
BspHI TCATGA 5 cut(s) 886, 2601, 2944, 4318, 5432
BspLI GGNNCC 6 cut(s) 940, 1377, 1627, 1801, 2985, 3310
BspMAI CTGCAG 1 cut(s) 1114
BspMI ACCTGC 1 cut(s) 1187
BspQI GCTCTTC 1 cut(s) 3654
BspT104I TTCGAA 4 cut(s) 97, 3243, 5002, 5383
BspT107I GGYRCC 3 cut(s) 938, 1625, 1799
BspTI CTTAAG 2 cut(s) 2038, 4021
BspTNI GGTCTC 1 cut(s) 5047
BsrDI GCAATG 2 cut(s) 1242, 1402
BsrGI TGTACA 2 cut(s) 961, 2635
BsrI ACTGG 6 cut(s) 118, 1042, 1081, 1736, 2740, 3253
BssECI CCNNGG 9 cut(s) 553, 627, 858, 1485, 1890, 1929, 3369, 3889, 4333
BssNAI GTATAC 1 cut(s) 4838
BssNI GRCGYC 3 cut(s) 5, 225, 2482
BssSI CACGAG 2 cut(s) 713, 4923
BssT1I CCWWGG 2 cut(s) 1485, 1929
Bst1107I GTATAC 1 cut(s) 4838
Bst2BI CACGAG 2 cut(s) 713, 4923
Bst6I CTCTTC 8 cut(s) 319, 373, 1617, 1910, 2199, 3320, 3654, 4857
BstACI GRCGYC 3 cut(s) 5, 225, 2482
BstAFI CTTAAG 2 cut(s) 2038, 4021
BstAPI GCANNNNNTGC 3 cut(s) 1118, 1670, 4181
BstAUI TGTACA 2 cut(s) 961, 2635
BstBI TTCGAA 4 cut(s) 97, 3243, 5002, 5383
BstDSI CCRYGG 2 cut(s) 1890, 1929
BstENI CCTNNNNNAGG 2 cut(s) 857, 1691
BstFNI CGCG 2 cut(s) 23, 3108
BstHHI GCGC 5 cut(s) 348, 2055, 3108, 3220, 4438
BstNSI RCATGY 7 cut(s) 1246, 2160, 2997, 3305, 3855, 4913, 5053
BstSFI CTRYAG 1 cut(s) 1110
BstSLI GKGCMC 2 cut(s) 1924, 4411
BstUI CGCG 2 cut(s) 23, 3108
BstV2I GAAGAC 5 cut(s) 776, 2153, 4280, 4788, 5421
BstXI CCANNNNNNTGG 2 cut(s) 3320, 4487
BstZ17I GTATAC 1 cut(s) 4838
Bsu15I ATCGAT 1 cut(s) 3499
BsuI GTATCC 1 cut(s) 3367
BsuRI GGCC 9 cut(s) 48, 199, 552, 562, 2101, 2791, 4338, 4855, 5364
BsuTUI ATCGAT 1 cut(s) 3499
BtgI CCRYGG 2 cut(s) 1890, 1929
BtgZI GCGATG 1 cut(s) 4591
BtsI GCAGTG 3 cut(s) 649, 2591, 4040
BtsIMutI CAGTG 7 cut(s) 369, 649, 2206, 2591, 2733, 3845, 4040
BveI ACCTGC 1 cut(s) 1187
CaiI CAGNNNCTG 3 cut(s) 836, 2500, 3103
CciI TCATGA 5 cut(s) 886, 2601, 2944, 4318, 5432
CfoI GCGC 5 cut(s) 348, 2055, 3108, 3220, 4438
Cfr13I GGNCC 8 cut(s) 47, 197, 560, 1322, 1410, 1435, 1901, 4336
Cfr9I CCCGGG 1 cut(s) 627
ClaI ATCGAT 1 cut(s) 3499
CseI GACGC 5 cut(s) 13, 827, 2471, 3097, 3504
Csp6I GTAC 9 cut(s) 367, 608, 939, 962, 1482, 2392, 2636, 2753, 2850
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviQI GTAC 9 cut(s) 367, 608, 939, 962, 1482, 2392, 2636, 2753, 2850
DraI TTTAAA 1 cut(s) 1603
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 1 cut(s) 3514
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 2 cut(s) 2789, 4853
Eam1104I CTCTTC 8 cut(s) 319, 373, 1617, 1910, 2199, 3320, 3654, 4857
Eam1105I GACNNNNNGTC 1 cut(s) 3514
EarI CTCTTC 8 cut(s) 319, 373, 1617, 1910, 2199, 3320, 3654, 4857
EciI GGCGGA 1 cut(s) 126
Ecl136II GAGCTC 4 cut(s) 82, 161, 1948, 4502
Eco130I CCWWGG 2 cut(s) 1485, 1929
Eco24I GRGCYC 6 cut(s) 65, 84, 163, 363, 1950, 4504
Eco31I GGTCTC 1 cut(s) 5047
Eco32I GATATC 1 cut(s) 4618
Eco47I GGWCC 4 cut(s) 1322, 1410, 1435, 1901
Eco53kI GAGCTC 4 cut(s) 82, 161, 1948, 4502
Eco57I CTGAAG 4 cut(s) 465, 1514, 2046, 2147
Eco88I CYCGRG 2 cut(s) 627, 4416
EcoICRI GAGCTC 4 cut(s) 82, 161, 1948, 4502
EcoNI CCTNNNNNAGG 2 cut(s) 857, 1691
EcoRV GATATC 1 cut(s) 4618
EcoT14I CCWWGG 2 cut(s) 1485, 1929
EcoT22I ATGCAT 3 cut(s) 868, 3857, 4911
EcoT38I GRGCYC 6 cut(s) 65, 84, 163, 363, 1950, 4504
ErhI CCWWGG 2 cut(s) 1485, 1929
Esp3I CGTCTC 2 cut(s) 1342, 4021
FalI AAGNNNNNCTT 8 cut(s) 171, 203, 937, 969, 1787, 1819, 4164, 4196
FaqI GGGAC 6 cut(s) 106, 447, 760, 841, 2823, 4761
FauI CCCGC 2 cut(s) 57, 551
FauNDI CATATG 4 cut(s) 2175, 3681, 4074, 4858
FbaI TGATCA 6 cut(s) 427, 1173, 2086, 2227, 3256, 4765
FblI GTMKAC 1 cut(s) 4837
FriOI GRGCYC 6 cut(s) 65, 84, 163, 363, 1950, 4504
FspBI CTAG 9 cut(s) 44, 335, 591, 1494, 2285, 3053, 3149, 3194, 4679
FspI TGCGCA 1 cut(s) 3219
GlaI GCGC 5 cut(s) 347, 2054, 3107, 3219, 4437
GsuI CTGGAG 8 cut(s) 101, 1025, 1449, 1882, 2249, 4136, 4466, 4518
HaeIII GGCC 9 cut(s) 48, 199, 552, 562, 2101, 2791, 4338, 4855, 5364
HapII CCGG 6 cut(s) 628, 906, 993, 1637, 2326, 3371
HgaI GACGC 5 cut(s) 13, 827, 2471, 3097, 3504
HhaI GCGC 5 cut(s) 348, 2055, 3108, 3220, 4438
Hin1I GRCGYC 3 cut(s) 5, 225, 2482
Hin6I GCGC 5 cut(s) 346, 2053, 3106, 3218, 4436
HinP1I GCGC 5 cut(s) 346, 2053, 3106, 3218, 4436
HincII GTYRAC 2 cut(s) 3687, 4558
HindII GTYRAC 2 cut(s) 3687, 4558
HindIII AAGCTT 3 cut(s) 1760, 2912, 3386
HpaI GTTAAC 1 cut(s) 3687
HpaII CCGG 6 cut(s) 628, 906, 993, 1637, 2326, 3371
Hpy99I CGWCG 1 cut(s) 115
HpyCH4IV ACGT 5 cut(s) 225, 574, 1074, 3654, 4560
HpySE526I ACGT 5 cut(s) 225, 574, 1074, 3654, 4560
Hsp92I GRCGYC 3 cut(s) 5, 225, 2482
HspAI GCGC 5 cut(s) 346, 2053, 3106, 3218, 4436
Kpn2I TCCGGA 1 cut(s) 2325
KpnI GGTACC 1 cut(s) 942
Ksp22I TGATCA 6 cut(s) 427, 1173, 2086, 2227, 3256, 4765
KspAI GTTAAC 1 cut(s) 3687
LguI GCTCTTC 1 cut(s) 3654
MaeI CTAG 9 cut(s) 44, 335, 591, 1494, 2285, 3053, 3149, 3194, 4679
MaeII ACGT 5 cut(s) 225, 574, 1074, 3654, 4560
MlsI TGGCCA 1 cut(s) 4855
MluNI TGGCCA 1 cut(s) 4855
MlyI GAGTC 3 cut(s) 2194, 4415, 4930
MmeI TCCRAC 4 cut(s) 1246, 1538, 1879, 3318
Mox20I TGGCCA 1 cut(s) 4855
Mph1103I ATGCAT 3 cut(s) 868, 3857, 4911
MroI TCCGGA 1 cut(s) 2325
MroXI GAANNNNTTC 4 cut(s) 1076, 3354, 3612, 4606
MscI TGGCCA 1 cut(s) 4855
MslI CAYNNNNRTG 4 cut(s) 2992, 3168, 3850, 4485
Msp20I TGGCCA 1 cut(s) 4855
MspA1I CMGCKG 3 cut(s) 52, 395, 548
MspCI CTTAAG 2 cut(s) 2038, 4021
MspI CCGG 6 cut(s) 628, 906, 993, 1637, 2326, 3371
MssI GTTTAAAC 1 cut(s) 1603
MvnI CGCG 2 cut(s) 23, 3108
NciI CCSGG 4 cut(s) 628, 629, 993, 3371
NcoI CCATGG 1 cut(s) 1929
NdeI CATATG 4 cut(s) 2175, 3681, 4074, 4858
NlaIV GGNNCC 6 cut(s) 940, 1377, 1627, 1801, 2985, 3310
NmeAIII GCCGAG 1 cut(s) 5218
NmuCI GTSAC 4 cut(s) 3696, 4868, 4925, 5392
NsbI TGCGCA 1 cut(s) 3219
NsiI ATGCAT 3 cut(s) 868, 3857, 4911
NspI RCATGY 7 cut(s) 1246, 2160, 2997, 3305, 3855, 4913, 5053
NspV TTCGAA 4 cut(s) 97, 3243, 5002, 5383
PaeI GCATGC 2 cut(s) 1246, 4913
PaeR7I CTCGAG 1 cut(s) 4416
PagI TCATGA 5 cut(s) 886, 2601, 2944, 4318, 5432
PaqCI CACCTGC 1 cut(s) 1187
PciI ACATGT 1 cut(s) 2993
PciSI GCTCTTC 1 cut(s) 3654
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 4 cut(s) 1076, 3354, 3612, 4606
PflFI GACNNNGTC 1 cut(s) 1211
PflMI CCANNNNNTGG 1 cut(s) 2500
PfoI TCCNGGA 1 cut(s) 991
PleI GAGTC 3 cut(s) 2193, 4415, 4930
PmeI GTTTAAAC 1 cut(s) 1603
PpsI GAGTC 3 cut(s) 2193, 4415, 4930
PscI ACATGT 1 cut(s) 2993
PsiI TTATAA 4 cut(s) 521, 2369, 2438, 2970
Psp124BI GAGCTC 4 cut(s) 84, 163, 1950, 4504
Psp1406I AACGTT 4 cut(s) 574, 1074, 3654, 4560
PspN4I GGNNCC 6 cut(s) 940, 1377, 1627, 1801, 2985, 3310
PspPI GGNCC 8 cut(s) 47, 197, 560, 1322, 1410, 1435, 1901, 4336
PsrI GAACNNNNNNTAC 2 cut(s) 2599, 2631
PstI CTGCAG 1 cut(s) 1114
PstNI CAGNNNCTG 3 cut(s) 836, 2500, 3103
PsyI GACNNNGTC 1 cut(s) 1211
PvuII CAGCTG 2 cut(s) 395, 548
RsaI GTAC 9 cut(s) 368, 609, 940, 963, 1483, 2393, 2637, 2754, 2851
RsaNI GTAC 9 cut(s) 367, 608, 939, 962, 1482, 2392, 2636, 2753, 2850
RseI CAYNNNNRTG 4 cut(s) 2992, 3168, 3850, 4485
SacI GAGCTC 4 cut(s) 84, 163, 1950, 4504
SapI GCTCTTC 1 cut(s) 3654
Sau96I GGNCC 8 cut(s) 47, 197, 560, 1322, 1410, 1435, 1901, 4336
SchI GAGTC 3 cut(s) 2194, 4415, 4930
SfcI CTRYAG 1 cut(s) 1110
Sfr274I CTCGAG 1 cut(s) 4416
SfuI TTCGAA 4 cut(s) 97, 3243, 5002, 5383
SinI GGWCC 4 cut(s) 1322, 1410, 1435, 1901
SlaI CTCGAG 1 cut(s) 4416
SmaI CCCGGG 1 cut(s) 629
SmiMI CAYNNNNRTG 4 cut(s) 2992, 3168, 3850, 4485
SphI GCATGC 2 cut(s) 1246, 4913
SsiI CCGC 6 cut(s) 23, 50, 137, 558, 679, 3690
SspI AATATT 2 cut(s) 2760, 4201
SspMI CTAG 9 cut(s) 44, 335, 591, 1494, 2285, 3053, 3149, 3194, 4679
SstI GAGCTC 4 cut(s) 84, 163, 1950, 4504
StyI CCWWGG 2 cut(s) 1485, 1929
TaiI ACGT 5 cut(s) 228, 577, 1077, 3657, 4563
TaqII GACCGA 1 cut(s) 171
TatI WGTACW 3 cut(s) 961, 2635, 2752
TscAI CASTG 7 cut(s) 376, 656, 2206, 2591, 2740, 3852, 4047
TseFI GTSAC 4 cut(s) 3696, 4868, 4925, 5392
Tsp45I GTSAC 4 cut(s) 3696, 4868, 4925, 5392
TspGWI ACGGA 2 cut(s) 272, 3512
TspMI CCCGGG 1 cut(s) 627
TspRI CASTG 7 cut(s) 376, 656, 2206, 2591, 2740, 3852, 4047
Tth111I GACNNNGTC 1 cut(s) 1211
Van91I CCANNNNNTGG 1 cut(s) 2500
Vha464I CTTAAG 2 cut(s) 2038, 4021
VneI GTGCAC 2 cut(s) 1920, 4407
VpaK11BI GGWCC 4 cut(s) 1322, 1410, 1435, 1901
XagI CCTNNNNNAGG 2 cut(s) 857, 1691
XbaI TCTAGA 2 cut(s) 590, 2284
XceI RCATGY 7 cut(s) 1246, 2160, 2997, 3305, 3855, 4913, 5053
XhoI CTCGAG 1 cut(s) 4416
XmaI CCCGGG 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 4837
XmnI GAANNNNTTC 4 cut(s) 1076, 3354, 3612, 4606
XspI CTAG 9 cut(s) 44, 335, 591, 1494, 2285, 3053, 3149, 3194, 4679
ZraI GACGTC 1 cut(s) 226
Zsp2I ATGCAT 3 cut(s) 868, 3857, 4911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.