Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Forward (+)

11246588 .. 11246887

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAGGAGCTGCTCATGCTTCAGAACAAGTTGACCGGCGAAATTCCGGCAAACTACGCGAAGTGCACGACTCTGACTTGGTTCAGGATCAACAACAACTCCCTCTCCGGTGTGGTTCCGGCTGGACTTTGGGGATTGCCGAATGTGGCAATCATTGACATCACTTCGAATCAAATTGAAGGTCCGATTACTTCCGATATCGGAAACGCCAAGAAGCTTGCGCAGTTGTTTGTGAGTTACAATCGGTTATCTGGCGAATTACCGGACGAGCCCGATTTTCGGTGGCAGACTTCGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

99

Amino Acids

10.95

Weight (kDa)

5.21

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	222
AccII	CGCG	1 cut(s)	59
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	179
AluBI	AGCT	2 cut(s)	10, 217
AluI	AGCT	2 cut(s)	10, 217
Alw21I	GWGCWC	1 cut(s)	68
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	95
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	167
BsaWI	WCCGGW	2 cut(s)	107, 262
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 89, 113, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	5 cut(s)	36, 47, 108, 119, 263
BslI	CCNNNNNNNGG	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	68, 273
Bsp143I	GATC	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 56
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	4 cut(s)	10, 122, 217, 271
CviKI_1	RGCY	4 cut(s)	10, 122, 217, 271
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	5
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	11
HapII	CCGG	5 cut(s)	36, 47, 108, 119, 263
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	70, 169
HpaII	CCGG	5 cut(s)	36, 47, 108, 119, 263
Hpy166II	GTNNAC	2 cut(s)	33, 66
Hpy188I	TCNGA	5 cut(s)	24, 75, 186, 196, 203
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	2 cut(s)	33, 66
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 56
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	8 cut(s)	49, 60, 70, 108, 121, 132, 237, 276
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	68, 273
MluCI	AATT	3 cut(s)	42, 174, 257
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	113
MspI	CCGG	5 cut(s)	36, 47, 108, 119, 263
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	16, 56
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	117
NsbI	TGCGCA	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	182
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	68, 273
SetI	ASST	4 cut(s)	12, 184, 219, 299
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	42, 174, 257
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	167, 293
TasI	AATT	3 cut(s)	42, 174, 257
TfiI	GAWTC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.