Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

48910568 .. 48913082

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG242300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCTATGGCTAGCACCATCTTTCTCTTGGGATTGGATCTGTTGCTTCAAAGCAGGCCCATGGCCGGTCTCGCTTACGAGATTCGTTTGGCCAGGCACTTTGGGTTTTTCGAGGGACTGCCACTTCCGTCTCCATCTGGCTCCGGGAGAGTCCCCGCTGCAGTGCCCTTGAAGATTGCCGTTGTCGACGGGAAGATGAACATCTCCAACTCCAAGGCAATAAGCAAGAAGCAATCTACAAAACTGACTCAAGCTAAACACCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.52

Weight (kDa)

10.45

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	2 cut(s)	63, 90
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	50, 172
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw26I	GTCTC	2 cut(s)	74, 135
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	56, 63, 90
ApeKI	GCWGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	145
AsuNHI	GCTAGC	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	26, 142
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	74, 135
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	94, 145
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	94, 145
BmtI	GCTAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	60, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	60, 213
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	3 cut(s)	58, 65, 92
BsiSI	CCGG	2 cut(s)	66, 144
BslFI	GGGAC	2 cut(s)	129, 137
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	74, 135
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	2 cut(s)	129, 137
BsnI	GGCC	3 cut(s)	58, 65, 92
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	37
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	3 cut(s)	58, 65, 92
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	163
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	60, 213
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	60, 213
Bst2UI	CCWGG	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	13, 56
BstDSI	CCRYGG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	2 cut(s)	74, 135
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	92, 143
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	58, 65, 92
BtgI	CCRYGG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	13, 56
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	5, 11, 58, 65, 92, 141, 254
CviKI_1	RGCY	7 cut(s)	5, 11, 58, 65, 92, 141, 254
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	2 cut(s)	63, 90
Eco130I	CCWWGG	2 cut(s)	60, 213
Eco31I	GGTCTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	2 cut(s)	60, 213
ErhI	CCWWGG	2 cut(s)	60, 213
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	8, 62
FaqI	GGGAC	2 cut(s)	129, 137
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	58, 65, 92
HapII	CCGG	2 cut(s)	66, 144
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	82, 150, 247
HpaII	CCGG	2 cut(s)	66, 144
Hpy166II	GTNNAC	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	6 cut(s)	40, 79, 79, 106, 123, 157
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	12
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	184, 205
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	2 cut(s)	159, 241
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	66, 144
MspR9I	CCNGG	2 cut(s)	94, 145
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	37
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	2 cut(s)	158, 241
PpsI	GAGTC	2 cut(s)	158, 241
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	159, 241
ScrFI	CCNGG	2 cut(s)	94, 145
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	92, 143
StyI	CCWWGG	2 cut(s)	60, 213
TaqI	TCGA	2 cut(s)	111, 186
TfiI	GAWTC	1 cut(s)	82
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.