Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000141.1

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

8697 .. 11635

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggtgctaagctggggtgaaggcagtaagggaccagctgggtcccgtgccccaagagagaagtcatcctccaccttgctgtgctccggtgaccagtggccggtgcggtctccggcgatcggtgaccggattccggcgaacggtgataggattccggcaaccggtgaccggattccggcgaccgttgaccggtttccggaaaccggtaaccgaaatccagcgaccgatgaccggaatccggaatcccgctattattgccccacaggtcaacaactccctctccggtgtggttccggctggagtttggggattgcagaatgtggcgaattaccggacaagcccgattttctgtggcagacttcgacatcgttttcggtaggtttcagctctgaattttcagctcaggactcgaactcggaatcgaaaccggtcgaggatgacgctggaggaggaaagagagcggcggtcatcactttcaacacgccgagagaatcggagacggaagacgacggcgaccggtcctcgttgccgcaatcggagccggtgggatcgccggttgcttgggcctccccgctaaaggtaacaagtaagagagggatttgcagcaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

203

Amino Acids

21.66

Weight (kDa)

4.93

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	597
AccBSI	CCGCTC	1 cut(s)	461
AccIII	TCCGGA	2 cut(s)	196, 238
AciI	CCGC	6 cut(s)	106, 247, 461, 464, 530, 572
AclWI	GGATC	1 cut(s)	556
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	392
AgeI	ACCGGT	5 cut(s)	161, 189, 203, 427, 516
AgsI	TTSAA	1 cut(s)	478
AluBI	AGCT	4 cut(s)	12, 38, 387, 401
AluI	AGCT	4 cut(s)	12, 38, 387, 401
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	114, 491
AlwI	GGATC	1 cut(s)	556
Aor13HI	TCCGGA	2 cut(s)	196, 238
AoxI	GGCC	2 cut(s)	98, 564
ApeKI	GCWGC	1 cut(s)	603
ApoI	RAATTY	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AsiGI	ACCGGT	5 cut(s)	161, 189, 203, 427, 516
AspS9I	GGNCC	4 cut(s)	32, 42, 519, 564
AsuHPI	GGTGA	5 cut(s)	29, 101, 134, 155, 176
AvaII	GGWCC	3 cut(s)	32, 42, 519
BaeGI	GKGCMC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	114, 491
BfuAI	ACCTGC	1 cut(s)	597
BisI	GCNGC	3 cut(s)	462, 530, 604
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	3 cut(s)	463, 531, 605
Bme18I	GGWCC	3 cut(s)	32, 42, 519
BmgT120I	GGNCC	4 cut(s)	32, 42, 519, 564
BmiI	GGNNCC	5 cut(s)	33, 43, 44, 292, 540
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	2 cut(s)	319, 465
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse118I	RCCGGY	8 cut(s)	100, 161, 189, 203, 427, 516, 541, 553
Bse1I	ACTGG	1 cut(s)	94
BseAI	TCCGGA	2 cut(s)	196, 238
BseGI	GGATG	2 cut(s)	65, 442
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	462
BseSI	GKGCMC	1 cut(s)	52
BseYI	CCCAGC	2 cut(s)	12, 38
Bsh1285I	CGRYCG	5 cut(s)	120, 183, 225, 432, 517
BshFI	GGCC	2 cut(s)	100, 566
BshTI	ACCGGT	5 cut(s)	161, 189, 203, 427, 516
BsiEI	CGRYCG	5 cut(s)	120, 183, 225, 432, 517
BsiHKAI	GWGCWC	1 cut(s)	86
BslFI	GGGAC	2 cut(s)	28, 45
BsmAI	GTCTC	2 cut(s)	114, 491
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	2 cut(s)	28, 45
BsnI	GGCC	2 cut(s)	100, 566
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	52, 86
Bsp13I	TCCGGA	2 cut(s)	196, 238
Bsp143I	GATC	2 cut(s)	117, 548
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	6 cut(s)	106, 247, 461, 464, 530, 572
BspANI	GGCC	2 cut(s)	100, 566
BspCNI	CTCAG	1 cut(s)	415
BspEI	TCCGGA	2 cut(s)	196, 238
BspLI	GGNNCC	5 cut(s)	33, 43, 44, 292, 540
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	461
BsrFI	RCCGGY	8 cut(s)	100, 161, 189, 203, 427, 516, 541, 553
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	8 cut(s)	100, 161, 189, 203, 427, 516, 541, 553
BssMI	GATC	2 cut(s)	117, 548
Bst4CI	ACNGT	2 cut(s)	143, 184
BstDEI	CTNAG	2 cut(s)	8, 402
BstEII	GGTNACC	4 cut(s)	89, 122, 164, 206
BstF5I	GGATG	2 cut(s)	65, 442
BstKTI	GATC	2 cut(s)	120, 551
BstMAI	GTCTC	2 cut(s)	114, 491
BstMBI	GATC	2 cut(s)	117, 548
BstMCI	CGRYCG	5 cut(s)	120, 183, 225, 432, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 538
BstPI	GGTNACC	4 cut(s)	89, 122, 164, 206
BstSLI	GKGCMC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	100, 566
BtsCI	GGATG	2 cut(s)	65, 442
BtsIMutI	CAGTG	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	597
Cfr10I	RCCGGY	8 cut(s)	100, 161, 189, 203, 427, 516, 541, 553
Cfr13I	GGNCC	4 cut(s)	32, 42, 519, 564
CseI	GACGC	1 cut(s)	449
CspAI	ACCGGT	5 cut(s)	161, 189, 203, 427, 516
CviJI	RGCY	9 cut(s)	12, 38, 100, 297, 340, 387, 401, 541, 566
CviKI_1	RGCY	9 cut(s)	12, 38, 100, 297, 340, 387, 401, 541, 566
DdeI	CTNAG	2 cut(s)	8, 402
DpnI	GATC	2 cut(s)	119, 550
DpnII	GATC	2 cut(s)	117, 548
EaeI	YGGCCR	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	3 cut(s)	32, 42, 519
Eco91I	GGTNACC	4 cut(s)	89, 122, 164, 206
EcoO109I	RGGNCCY	1 cut(s)	42
EcoO65I	GGTNACC	4 cut(s)	89, 122, 164, 206
Esp3I	CGTCTC	1 cut(s)	491
FaqI	GGGAC	2 cut(s)	28, 45
FauI	CCCGC	2 cut(s)	254, 579
Fnu4HI	GCNGC	3 cut(s)	462, 530, 604
FokI	GGATG	2 cut(s)	52, 449
Fsp4HI	GCNGC	3 cut(s)	462, 530, 604
GluI	GCNGC	3 cut(s)	462, 530, 604
GsaI	CCCAGC	2 cut(s)	16, 42
GsuI	CTGGAG	2 cut(s)	319, 465
HaeIII	GGCC	2 cut(s)	100, 566
HgaI	GACGC	1 cut(s)	449
HincII	GTYRAC	2 cut(s)	187, 269
HindII	GTYRAC	2 cut(s)	187, 269
HinfI	GANTC	8 cut(s)	130, 151, 172, 235, 242, 407, 419, 491
HphI	GGTGA	5 cut(s)	29, 101, 134, 155, 176
Hpy166II	GTNNAC	2 cut(s)	187, 269
Hpy188I	TCNGA	4 cut(s)	391, 418, 496, 538
Hpy188III	TCNNGA	3 cut(s)	197, 239, 404
Hpy8I	GTNNAC	2 cut(s)	187, 269
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	143, 184
HpyCH4V	TGCA	2 cut(s)	314, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 538
HpyF3I	CTNAG	2 cut(s)	8, 402
KflI	GGGWCCC	1 cut(s)	42
Kpn2I	TCCGGA	2 cut(s)	196, 238
Kzo9I	GATC	2 cut(s)	117, 548
LmnI	GCTCC	2 cut(s)	89, 538
MaeIII	GTNAC	5 cut(s)	89, 122, 164, 206, 580
MalI	GATC	2 cut(s)	119, 550
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	2 cut(s)	117, 548
MboII	GAAGA	1 cut(s)	515
MhlI	GDGCHC	2 cut(s)	52, 86
MluCI	AATT	2 cut(s)	326, 392
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	79, 288, 427, 440, 443, 532, 577, 587
MroI	TCCGGA	2 cut(s)	196, 238
MspA1I	CMGCKG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	255, 538
NdeII	GATC	2 cut(s)	117, 548
NlaIV	GGNNCC	5 cut(s)	33, 43, 44, 292, 540
NmeAIII	GCCGAG	1 cut(s)	510
NmuCI	GTSAC	3 cut(s)	89, 122, 164
PaqCI	CACCTGC	1 cut(s)	597
PfeI	GAWTC	7 cut(s)	130, 151, 172, 235, 242, 419, 491
PinAI	ACCGGT	5 cut(s)	161, 189, 203, 427, 516
PkrI	GCNGC	3 cut(s)	463, 531, 605
Ple19I	CGATCG	1 cut(s)	120
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
PspEI	GGTNACC	4 cut(s)	89, 122, 164, 206
PspFI	CCCAGC	2 cut(s)	12, 38
PspN4I	GGNNCC	5 cut(s)	33, 43, 44, 292, 540
PspPI	GGNCC	4 cut(s)	32, 42, 519, 564
PspPPI	RGGWCCY	1 cut(s)	42
PvuI	CGATCG	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	38
SatI	GCNGC	3 cut(s)	462, 530, 604
Sau3AI	GATC	2 cut(s)	117, 548
Sau96I	GGNCC	4 cut(s)	32, 42, 519, 564
SchI	GAGTC	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	52, 86
SetI	ASST	9 cut(s)	14, 40, 77, 268, 382, 389, 403, 582, 611
SinI	GGWCC	3 cut(s)	32, 42, 519
Sse9I	AATT	2 cut(s)	326, 392
SsiI	CCGC	6 cut(s)	106, 247, 461, 464, 530, 572
TaaI	ACNGT	2 cut(s)	143, 184
TaqI	TCGA	4 cut(s)	362, 410, 422, 432
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	2 cut(s)	326, 392
TauI	GCSGC	2 cut(s)	464, 532
TfiI	GAWTC	7 cut(s)	130, 151, 172, 235, 242, 419, 491
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	3 cut(s)	89, 122, 164
TseI	GCWGC	1 cut(s)	603
Tsp45I	GTSAC	3 cut(s)	89, 122, 164
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	1 cut(s)	101
VpaK11BI	GGWCC	3 cut(s)	32, 42, 519
XapI	RAATTY	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.