Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

66918904 .. 66923620

Gene Structure 4717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGGCGGCTCCGGAACCCGAGGACGAGAAAAGCTGGCAGGAGCTACTCAGAAGGATGCTGCCTTCCGGCGCGCCGTTGCCGGACGACGACCATCTCGACTACTCCATCGCAGTTGAGTACGAAGGCCCTCCGCTGCCCTACGAAGTCCCCAAGGTTGATCCAGTCGACATCGACTCGCTTCACACCGCTGCTTCCGGAGCTTCGGGTTCGGTTTCGGAGCTTTCTTCGATTCCGGTGGCCGAGCCGGTCGATCGGGACGCCTCTCGGTTCAGCCGGATCAGGAACGGCGACGCCGCAAACGAAACGCAGACTTCGACGTCGTTTTCGGTAGGTTTCAGCTCTGAATTTTCAGCTCAGGACTCGAACTCGGAGCCGAAACCGGTGGTGGAGGACGACGCCGGAGGAGGAGGAGGAAAGAGAGCGGCGGTCGTGACTTTCAACACGCCGAGAGAATCGGAGACGGAAGACGACGGCGACCGGTCCTCGTCCCCGCAATCGGAGCCGGTGGGATCGCCGGTTGCTTGGGCCTCGCCGCTGAAGGTAGCGAGTAAGAGAGGGATTTGCAGCAGGTGTGGAAAAGGGAACAGATTGAAGGAGAGGGAGTGGTGCTTGGTGTGCGACTCAAAGTACTGTAGCAACTGTTTGCTTAAAGCTATGGGATCAATGCCGGAGGGGCGAAAATGTGTGAGCTGCATTGGGCAGCCTATAGATGAGTCCAAGAGGGCTAGTTTGGGCAAGTGTTCAAAGCTTCTTTCTAGGGTTTGTAGTCCTTTGGAGATTGGGCAGATAATGAGGGCCGAGAAGGAGTGTCCGGCCAATCAGCTCCGGCCGCAGCAGTTGGTTTTGAATGGGAGGGAGTTGAGGGAAGAAGAGCTGGGTGAGATTTTGGGATGTGAAGTACCTCCTCAGAAGTTGAAGCCTGGGAGGTACTGGTACGATAAGGATTCGGGCCTCTGGGGAAAGGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTGGGGGTAAGCTTCGGGCTGATGCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGCTGGCCAAAGTGCAGTGCCCTCCAGATACTCATTTCTGGGTGTATGAAGATGGTACATATGAGGAGGAAGGGCAGAATAACATTAAAGGAAACATATGGGGAAAGGCATCCACCCGTTTCATTTGTTCATTATTCTCATTGCCTGTACCATCTCGTAATCAAAATGGGGCAAGAGAAGATCCTATGACACAACCTTCAAGTAGGTCCATCCCTGAATACTTGGATCAGGCAAGAGTTCAAAAACTTTTGTTATTTGGTCTGGAGGGATCTGGAACTAGCACCATCTTCAAGCAGGCCAAGTTCTTATATGGGAACGAGTTCACTCCCGAGGAGGTGCAGAACATGAAGCTCATGATTCAAAGCAATATGTACAAGTACTTAAGTATATTACTTGAGGGCCGAGAACGTTTTGAAGAGGAAGCTTCATTGCAGAATACTTCTGATTCCTTGGCCACTGACGAGACGCCATCAGTAGTCGATGAAAGTAAGCAATGCATCTATTCTATCAACCAAAGATTCAAGCACTTTTCTGACTGGTTGCTGGATATCATGGCAACCGGAGACTTGGATGCATTCTTCCCTGCTGCTACACGTGAGTATGCTCCTATTGTAGATGAAGTATGGAAAGATTCTGCCATCCAGGAAACATACAAAAGAAGGGAGGAATTACATTGTCTTCCAGAAGTTGCCAAGTATTTCTTAGATCGGGCTATAGAAATATCAAGTAATGAGTATGAGCCAACCGAGAAGGACATTTTATATGCTGAAGGAGTTACTCAAAGCAATGGCCTTACCTCTCTAGAATTTTCATTTGATGATAGAAGCTCCATGTCTGAGCTATACAACGAAAACTATGAATGCCCCCTTCCGTTAACCAAGTACCAACTAATTTGTCTTAGTTCTAAGGGACTAAATGAGGGGTGCAAATGGCTTGCAATGTTTGAAGACGTGAGGGCAGTGATTTTTTGTGTTGCTTTGAGTGACTATGATCAAATGTGGGCCCTTGGTAATGGGCGTCTTCATAATAAATTGCTGGCAAGCAGAGAATTGTTCGAGAGTTTGGTGAGGCACCCTTGTTTTAGTAACACTCCATTTGTTCTTGTGCTGAACAAATATGATGCATTTGAAGACAAGATAGGCCAGGTTCCATTGTCAGCTTGTGAGTGGTTCAATGACTTCAACCCTGTTAAGCCGCACAATAATAGTCAGGCTCTAGCTCAGCAAGCATATTACTATGTGGCAGTGAAATTCAAAGAGCTCTATTTATCCTTAAGCGGTCAAAAGTTATTTGTAGTGCAAACCCGAGCTAGAGATGGTAACTCAGTTGATGTGGCATTCAAGTACATAAGGGAGGTCCTCAAGTGGGATGAAGAAAAGGATGATAATTTCTTTGGAATAAATGGGGATGACTCCTATTTCAGTACAGAAATGAGTTCTTCCCCATATGTCAGGCGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

853

Amino Acids

95.73

Weight (kDa)

4.92

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	444 - 819	8.7e-73	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	558
AasI	GACNNNNNNGTC	1 cut(s)	316
AatII	GACGTC	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	2169
AccBSI	CCGCTC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	2 cut(s)	10, 194
AclI	AACGTT	1 cut(s)	1507
AclWI	GGATC	7 cut(s)	152, 284, 517, 667, 1274, 1332, 1375
AcoI	YGGCCR	5 cut(s)	237, 813, 827, 1104, 1551
AcsI	RAATTY	3 cut(s)	344, 1904, 2348
AcuI	CTGAAG	2 cut(s)	557, 1887
AcvI	CACGTG	1 cut(s)	1694
AcyI	GRCGYC	6 cut(s)	258, 291, 317, 396, 1565, 2116
AfiI	CCNNNNNNNGG	3 cut(s)	496, 1038, 2464
AflII	CTTAAG	2 cut(s)	1480, 2371
AflIII	ACRYGT	1 cut(s)	1691
AgeI	ACCGGT	2 cut(s)	379, 477
AjiI	CACGTC	1 cut(s)	2050
AjnI	CCWGG	3 cut(s)	919, 1740, 2241
Alw21I	GWGCWC	2 cut(s)	1098, 2361
Alw26I	GTCTC	3 cut(s)	452, 1556, 1656
AlwI	GGATC	7 cut(s)	152, 284, 517, 667, 1274, 1332, 1375
Ama87I	CYCGRG	3 cut(s)	17, 1427, 2403
Aor13HI	TCCGGA	2 cut(s)	10, 194
ApaI	GGGCCC	1 cut(s)	2104
ApeKI	GCWGC	8 cut(s)	58, 133, 188, 564, 690, 700, 832, 1685
ApoI	RAATTY	3 cut(s)	344, 1904, 2348
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AscI	GGCGCGCC	1 cut(s)	69
AsiGI	ACCGGT	2 cut(s)	379, 477
Asp700I	GAANNNNTTC	1 cut(s)	1418
AspLEI	GCGC	2 cut(s)	71, 73
AsuHPI	GGTGA	2 cut(s)	890, 2176
AvaI	CYCGRG	3 cut(s)	17, 1427, 2403
AvaII	GGWCC	3 cut(s)	480, 1305, 2455
BaeGI	GKGCMC	2 cut(s)	1121, 2104
BalI	TGGCCA	2 cut(s)	1106, 1553
BanI	GGYRCC	1 cut(s)	2169
BanII	GRGCYC	2 cut(s)	2104, 2361
BbrPI	CACGTG	1 cut(s)	1694
BbsI	GAAGAC	5 cut(s)	471, 1769, 2052, 2111, 2235
Bbv12I	GWGCWC	2 cut(s)	1098, 2361
BbvI	GCAGC	8 cut(s)	45, 120, 175, 576, 677, 712, 844, 1672
BccI	CCATC	9 cut(s)	99, 113, 1145, 1258, 1316, 1391, 1576, 1745, 2408
BceAI	ACGGC	3 cut(s)	58, 301, 487
BciT130I	CCWGG	3 cut(s)	921, 1742, 2243
BclI	TGATCA	1 cut(s)	2089
BcoDI	GTCTC	3 cut(s)	452, 1556, 1656
BfaI	CTAG	6 cut(s)	726, 756, 1377, 1901, 2315, 2409
BfmI	CTRYAG	3 cut(s)	631, 705, 1812
BfrI	CTTAAG	2 cut(s)	1480, 2371
BfuAI	ACCTGC	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	673
BlpI	GCTNAGC	1 cut(s)	2319
BmcAI	AGTACT	2 cut(s)	629, 1478
Bme1390I	CCNGG	3 cut(s)	921, 1742, 2243
Bme18I	GGWCC	3 cut(s)	480, 1305, 2455
BmeT110I	CYCGRG	3 cut(s)	17, 1427, 2403
BmgBI	CACGTC	1 cut(s)	2050
BmiI	GGNNCC	7 cut(s)	9, 15, 372, 501, 2102, 2171, 2247
BmrFI	CCNGG	3 cut(s)	921, 1742, 2243
BmsI	GCATC	6 cut(s)	45, 1018, 1217, 1605, 1660, 2209
BpiI	GAAGAC	5 cut(s)	471, 1769, 2052, 2111, 2235
BpmI	CTGGAG	2 cut(s)	1107, 1382
Bpu10I	CCTNAGC	2 cut(s)	354, 1088
Bpu1102I	GCTNAGC	1 cut(s)	2319
BpuEI	CTTGAG	3 cut(s)	1082, 1514, 2444
BsaAI	YACGTR	1 cut(s)	1694
BsaHI	GRCGYC	6 cut(s)	258, 291, 317, 396, 1565, 2116
BsaJI	CCNNGG	6 cut(s)	18, 150, 920, 1428, 1548, 2104
BsaWI	WCCGGW	6 cut(s)	10, 194, 232, 379, 477, 1658
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	3 cut(s)	496, 1038, 2464
Bse118I	RCCGGY	5 cut(s)	244, 379, 477, 502, 514
Bse1I	ACTGG	3 cut(s)	161, 935, 1640
Bse3DI	GCAATG	6 cut(s)	1042, 1238, 1526, 1598, 1891, 2043
BseAI	TCCGGA	2 cut(s)	10, 194
BseBI	CCWGG	3 cut(s)	921, 1742, 2243
BseDI	CCNNGG	6 cut(s)	18, 150, 920, 1428, 1548, 2104
BseGI	GGATG	9 cut(s)	60, 896, 1208, 1308, 1675, 1737, 2473, 2485, 2512
BseLI	CCNNNNNNNGG	3 cut(s)	496, 1038, 2464
BseMI	GCAATG	6 cut(s)	1042, 1238, 1526, 1598, 1891, 2043
BseMII	CTCAG	6 cut(s)	61, 368, 920, 1926, 2333, 2436
BseNI	ACTGG	3 cut(s)	161, 935, 1640
BsePI	GCGCGC	1 cut(s)	69
BseRI	GAGGAG	6 cut(s)	417, 420, 423, 894, 1178, 1445
BseSI	GKGCMC	2 cut(s)	1121, 2104
BseX3I	CGGCCG	1 cut(s)	827
BseXI	GCAGC	8 cut(s)	45, 120, 175, 576, 677, 712, 844, 1672
BseYI	CCCAGC	1 cut(s)	874
BsgI	GTGCAG	2 cut(s)	1133, 1457
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	5 cut(s)	249, 253, 429, 478, 830
BshNI	GGYRCC	1 cut(s)	2169
BshTI	ACCGGT	2 cut(s)	379, 477
BsiEI	CGRYCG	5 cut(s)	249, 253, 429, 478, 830
BsiHKAI	GWGCWC	2 cut(s)	1098, 2361
BsiHKCI	CYCGRG	3 cut(s)	17, 1427, 2403
BslFI	GGGAC	4 cut(s)	131, 269, 472, 2022
BslI	CCNNNNNNNGG	3 cut(s)	496, 1038, 2464
BsmAI	GTCTC	3 cut(s)	452, 1556, 1656
BsmBI	CGTCTC	2 cut(s)	452, 1556
BsmFI	GGGAC	4 cut(s)	131, 269, 472, 2022
BsmI	GAATGC	3 cut(s)	1673, 1964, 2435
BsoBI	CYCGRG	3 cut(s)	17, 1427, 2403
Bsp120I	GGGCCC	1 cut(s)	2100
Bsp1286I	GDGCHC	4 cut(s)	1098, 1121, 2104, 2361
Bsp13I	TCCGGA	2 cut(s)	10, 194
Bsp1407I	TGTACA	1 cut(s)	1470
Bsp1720I	GCTNAGC	1 cut(s)	2319
BspCNI	CTCAG	6 cut(s)	60, 367, 919, 1927, 2332, 2435
BspEI	TCCGGA	2 cut(s)	10, 194
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	2 cut(s)	1056, 1452
BspLI	GGNNCC	7 cut(s)	9, 15, 372, 501, 2102, 2171, 2247
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	7 cut(s)	152, 284, 517, 667, 1274, 1332, 1375
BspQI	GCTCTTC	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	2169
BspTI	CTTAAG	2 cut(s)	1480, 2371
BsrBI	CCGCTC	1 cut(s)	422
BsrDI	GCAATG	6 cut(s)	1042, 1238, 1526, 1598, 1891, 2043
BsrFI	RCCGGY	5 cut(s)	244, 379, 477, 502, 514
BsrGI	TGTACA	1 cut(s)	1470
BsrI	ACTGG	3 cut(s)	161, 935, 1640
BssAI	RCCGGY	5 cut(s)	244, 379, 477, 502, 514
BssECI	CCNNGG	6 cut(s)	18, 150, 920, 1428, 1548, 2104
BssHII	GCGCGC	1 cut(s)	69
BssNI	GRCGYC	6 cut(s)	258, 291, 317, 396, 1565, 2116
BssT1I	CCWWGG	3 cut(s)	150, 1548, 2104
Bst2UI	CCWGG	3 cut(s)	921, 1742, 2243
Bst4CI	ACNGT	2 cut(s)	632, 641
Bst6I	CTCTTC	2 cut(s)	864, 1509
BstACI	GRCGYC	6 cut(s)	258, 291, 317, 396, 1565, 2116
BstAFI	CTTAAG	2 cut(s)	1480, 2371
BstAUI	TGTACA	1 cut(s)	1470
BstBAI	YACGTR	1 cut(s)	1694
BstC8I	GCNNGC	9 cut(s)	35, 71, 1033, 1104, 1395, 2034, 2136, 2140, 2325
BstF5I	GGATG	9 cut(s)	60, 896, 1208, 1308, 1675, 1737, 2473, 2485, 2512
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	71, 73
BstMAI	GTCTC	3 cut(s)	452, 1556, 1656
BstMCI	CGRYCG	5 cut(s)	249, 253, 429, 478, 830
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 499, 615, 673, 829, 1093, 2324
BstNI	CCWGG	3 cut(s)	921, 1742, 2243
BstSCI	CCNGG	3 cut(s)	919, 1740, 2241
BstSFI	CTRYAG	3 cut(s)	631, 705, 1812
BstSLI	GKGCMC	2 cut(s)	1121, 2104
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	8 cut(s)	45, 120, 175, 576, 677, 712, 844, 1672
BstV2I	GAAGAC	5 cut(s)	471, 1769, 2052, 2111, 2235
BstX2I	RGATCY	2 cut(s)	1279, 1367
BstYI	RGATCY	2 cut(s)	1279, 1367
BstZI	CGGCCG	1 cut(s)	827
BtgZI	GCGATG	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	2050
BtsCI	GGATG	9 cut(s)	60, 896, 1208, 1308, 1675, 1737, 2473, 2485, 2512
BtsI	GCAGTG	3 cut(s)	1121, 2064, 2349
BtsIMutI	CAGTG	4 cut(s)	1121, 1554, 2064, 2349
BveI	ACCTGC	1 cut(s)	558
Cac8I	GCNNGC	9 cut(s)	35, 71, 1033, 1104, 1395, 2034, 2136, 2140, 2325
CciI	TCATGA	2 cut(s)	1056, 1452
CfoI	GCGC	2 cut(s)	71, 73
Cfr10I	RCCGGY	5 cut(s)	244, 379, 477, 502, 514
CseI	GACGC	5 cut(s)	266, 299, 404, 1573, 2105
CspAI	ACCGGT	2 cut(s)	379, 477
CviAII	CATG	5 cut(s)	1057, 1444, 1453, 1651, 1930
DrdI	GACNNNNNNGTC	1 cut(s)	316
DseDI	GACNNNNNNGTC	1 cut(s)	316
EaeI	YGGCCR	5 cut(s)	237, 813, 827, 1104, 1551
EagI	CGGCCG	1 cut(s)	827
Eam1104I	CTCTTC	2 cut(s)	864, 1509
EarI	CTCTTC	2 cut(s)	864, 1509
Ecl136II	GAGCTC	1 cut(s)	2359
EclXI	CGGCCG	1 cut(s)	827
Eco130I	CCWWGG	3 cut(s)	150, 1548, 2104
Eco24I	GRGCYC	2 cut(s)	2104, 2361
Eco32I	GATATC	1 cut(s)	1648
Eco47I	GGWCC	3 cut(s)	480, 1305, 2455
Eco52I	CGGCCG	1 cut(s)	827
Eco53kI	GAGCTC	1 cut(s)	2359
Eco57I	CTGAAG	2 cut(s)	557, 1887
Eco72I	CACGTG	1 cut(s)	1694
Eco88I	CYCGRG	3 cut(s)	17, 1427, 2403
EcoICRI	GAGCTC	1 cut(s)	2359
EcoO109I	RGGNCCY	3 cut(s)	125, 2101, 2455
EcoRII	CCWGG	3 cut(s)	919, 1740, 2241
EcoRV	GATATC	1 cut(s)	1648
EcoT14I	CCWWGG	3 cut(s)	150, 1548, 2104
EcoT22I	ATGCAT	3 cut(s)	1598, 1675, 2224
EcoT38I	GRGCYC	2 cut(s)	2104, 2361
ErhI	CCWWGG	3 cut(s)	150, 1548, 2104
Esp3I	CGTCTC	2 cut(s)	452, 1556
FaeI	CATG	5 cut(s)	1060, 1447, 1456, 1654, 1933
FalI	AAGNNNNNCTT	2 cut(s)	1784, 1816
FaqI	GGGAC	4 cut(s)	131, 269, 472, 2022
FatI	CATG	5 cut(s)	1056, 1443, 1452, 1650, 1929
FauI	CCCGC	1 cut(s)	498
FauNDI	CATATG	3 cut(s)	1159, 1196, 2545
FbaI	TGATCA	1 cut(s)	2089
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	9 cut(s)	67, 903, 1195, 1295, 1682, 1724, 2480, 2492, 2519
FriOI	GRGCYC	2 cut(s)	2104, 2361
FspBI	CTAG	6 cut(s)	726, 756, 1377, 1901, 2315, 2409
GlaI	GCGC	2 cut(s)	70, 72
GsaI	CCCAGC	1 cut(s)	878
GsuI	CTGGAG	2 cut(s)	1107, 1382
HgaI	GACGC	5 cut(s)	266, 299, 404, 1573, 2105
HhaI	GCGC	2 cut(s)	71, 73
Hin1I	GRCGYC	6 cut(s)	258, 291, 317, 396, 1565, 2116
Hin1II	CATG	5 cut(s)	1060, 1447, 1456, 1654, 1933
Hin6I	GCGC	2 cut(s)	69, 71
HinP1I	GCGC	2 cut(s)	69, 71
HincII	GTYRAC	2 cut(s)	166, 1974
HindII	GTYRAC	2 cut(s)	166, 1974
HindIII	AAGCTT	3 cut(s)	746, 1016, 1521
HpaI	GTTAAC	1 cut(s)	1974
HphI	GGTGA	2 cut(s)	890, 2176
Hpy166II	GTNNAC	3 cut(s)	166, 1422, 1974
Hpy8I	GTNNAC	3 cut(s)	166, 1422, 1974
Hpy99I	CGWCG	6 cut(s)	89, 293, 319, 322, 398, 473
HpyCH4III	ACNGT	2 cut(s)	632, 641
HpyCH4IV	ACGT	4 cut(s)	317, 1507, 1693, 2049
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 499, 615, 673, 829, 1093, 2324
HpySE526I	ACGT	4 cut(s)	317, 1507, 1693, 2049
Hsp92I	GRCGYC	6 cut(s)	258, 291, 317, 396, 1565, 2116
Hsp92II	CATG	5 cut(s)	1060, 1447, 1456, 1654, 1933
HspAI	GCGC	2 cut(s)	69, 71
Kpn2I	TCCGGA	2 cut(s)	10, 194
Ksp22I	TGATCA	1 cut(s)	2089
KspAI	GTTAAC	1 cut(s)	1974
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	9 cut(s)	13, 40, 197, 217, 370, 499, 828, 1708, 1931
Lsp1109I	GCAGC	8 cut(s)	45, 120, 175, 576, 677, 712, 844, 1672
LweI	GCATC	6 cut(s)	45, 1018, 1217, 1605, 1660, 2209
MaeI	CTAG	6 cut(s)	726, 756, 1377, 1901, 2315, 2409
MaeII	ACGT	4 cut(s)	317, 1507, 1693, 2049
MaeIII	GTNAC	5 cut(s)	430, 1873, 2081, 2183, 2417
MbiI	CCGCTC	1 cut(s)	422
MflI	RGATCY	2 cut(s)	1279, 1367
MhlI	GDGCHC	4 cut(s)	1098, 1121, 2104, 2361
MlsI	TGGCCA	2 cut(s)	1106, 1553
MluCI	AATT	8 cut(s)	344, 1766, 1904, 1989, 2129, 2147, 2348, 2485
MluNI	TGGCCA	2 cut(s)	1106, 1553
MlyI	GAGTC	5 cut(s)	167, 353, 614, 722, 2504
Mox20I	TGGCCA	2 cut(s)	1106, 1553
Mph1103I	ATGCAT	3 cut(s)	1598, 1675, 2224
MroI	TCCGGA	2 cut(s)	10, 194
MroXI	GAANNNNTTC	1 cut(s)	1418
MscI	TGGCCA	2 cut(s)	1106, 1553
MseI	TTAA	6 cut(s)	648, 1185, 1481, 1973, 2289, 2372
Msp20I	TGGCCA	2 cut(s)	1106, 1553
MspA1I	CMGCKG	3 cut(s)	133, 188, 535
MspCI	CTTAAG	2 cut(s)	1480, 2371
MspR9I	CCNGG	3 cut(s)	921, 1742, 2243
Mva1269I	GAATGC	3 cut(s)	1673, 1964, 2435
MvaI	CCWGG	3 cut(s)	921, 1742, 2243
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	7 cut(s)	197, 499, 615, 673, 829, 1093, 2324
NdeI	CATATG	3 cut(s)	1159, 1196, 2545
NlaIII	CATG	5 cut(s)	1060, 1447, 1456, 1654, 1933
NlaIV	GGNNCC	7 cut(s)	9, 15, 372, 501, 2102, 2171, 2247
NmeAIII	GCCGAG	4 cut(s)	265, 471, 823, 1526
NmuCI	GTSAC	2 cut(s)	430, 2081
NsiI	ATGCAT	3 cut(s)	1598, 1675, 2224
PagI	TCATGA	2 cut(s)	1056, 1452
PalAI	GGCGCGCC	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	558
PauI	GCGCGC	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	864
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 297, 311
PctI	GAATGC	3 cut(s)	1673, 1964, 2435
PdmI	GAANNNNTTC	1 cut(s)	1418
PfeI	GAWTC	7 cut(s)	229, 452, 944, 1456, 1544, 1617, 1730
PfoI	TCCNGGA	1 cut(s)	1740
PinAI	ACCGGT	2 cut(s)	379, 477
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	5 cut(s)	167, 353, 614, 721, 2504
PmaCI	CACGTG	1 cut(s)	1694
PmlI	CACGTG	1 cut(s)	1694
PpsI	GAGTC	5 cut(s)	167, 353, 614, 721, 2504
Ppu21I	YACGTR	1 cut(s)	1694
PpuMI	RGGWCCY	1 cut(s)	2455
Psp124BI	GAGCTC	1 cut(s)	2361
Psp1406I	AACGTT	1 cut(s)	1507
Psp5II	RGGWCCY	1 cut(s)	2455
Psp6I	CCWGG	3 cut(s)	919, 1740, 2241
PspCI	CACGTG	1 cut(s)	1694
PspFI	CCCAGC	1 cut(s)	874
PspGI	CCWGG	3 cut(s)	919, 1740, 2241
PspN4I	GGNNCC	7 cut(s)	9, 15, 372, 501, 2102, 2171, 2247
PspOMI	GGGCCC	1 cut(s)	2100
PspPPI	RGGWCCY	1 cut(s)	2455
PsuI	RGATCY	2 cut(s)	1279, 1367
PteI	GCGCGC	1 cut(s)	69
PvuI	CGATCG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	2361
SalI	GTCGAC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	6 cut(s)	648, 1185, 1481, 1973, 2289, 2372
ScaI	AGTACT	2 cut(s)	629, 1478
SchI	GAGTC	5 cut(s)	167, 353, 614, 722, 2504
ScrFI	CCNGG	3 cut(s)	921, 1742, 2243
SduI	GDGCHC	4 cut(s)	1098, 1121, 2104, 2361
SfaNI	GCATC	6 cut(s)	45, 1018, 1217, 1605, 1660, 2209
SfcI	CTRYAG	3 cut(s)	631, 705, 1812
SgsI	GGCGCGCC	1 cut(s)	69
SinI	GGWCC	3 cut(s)	480, 1305, 2455
SmlI	CTYRAG	5 cut(s)	1097, 1480, 1493, 2371, 2459
SmoI	CTYRAG	5 cut(s)	1097, 1480, 1493, 2371, 2459
Sse9I	AATT	8 cut(s)	344, 1766, 1904, 1989, 2129, 2147, 2348, 2485
SspMI	CTAG	6 cut(s)	726, 756, 1377, 1901, 2315, 2409
SstI	GAGCTC	1 cut(s)	2361
StyD4I	CCNGG	3 cut(s)	919, 1740, 2241
StyI	CCWWGG	3 cut(s)	150, 1548, 2104
TaaI	ACNGT	2 cut(s)	632, 641
TaiI	ACGT	4 cut(s)	320, 1510, 1696, 2052
TaqI	TCGA	9 cut(s)	96, 165, 171, 227, 249, 314, 362, 1578, 2154
TasI	AATT	8 cut(s)	344, 1766, 1904, 1989, 2129, 2147, 2348, 2485
TatI	WGTACW	5 cut(s)	627, 1470, 1476, 2442, 2522
TauI	GCSGC	6 cut(s)	8, 296, 425, 535, 832, 2296
TfiI	GAWTC	7 cut(s)	229, 452, 944, 1456, 1544, 1617, 1730
Tru1I	TTAA	6 cut(s)	648, 1185, 1481, 1973, 2289, 2372
Tru9I	TTAA	6 cut(s)	648, 1185, 1481, 1973, 2289, 2372
TscAI	CASTG	4 cut(s)	1121, 1561, 2064, 2349
TseFI	GTSAC	2 cut(s)	430, 2081
TseI	GCWGC	8 cut(s)	58, 133, 188, 564, 690, 700, 832, 1685
Tsp45I	GTSAC	2 cut(s)	430, 2081
TspGWI	ACGGA	2 cut(s)	476, 1959
TspRI	CASTG	4 cut(s)	1121, 1561, 2064, 2349
Vha464I	CTTAAG	2 cut(s)	1480, 2371
VpaK11BI	GGWCC	3 cut(s)	480, 1305, 2455
XapI	RAATTY	3 cut(s)	344, 1904, 2348
XbaI	TCTAGA	1 cut(s)	1900
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	1418
XspI	CTAG	6 cut(s)	726, 756, 1377, 1901, 2315, 2409
ZraI	GACGTC	1 cut(s)	318
ZrmI	AGTACT	2 cut(s)	629, 1478
Zsp2I	ATGCAT	3 cut(s)	1598, 1675, 2224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.