Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

50019755 .. 50020384

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGGAGCTGCTCATGCTTCAGAACAAGTTGACCGGCGAAATTCCGGCAAACTACGCTAAGTGCACGACGCTGACCCGGTTTAGGGTCAACAACAACTCCCTCTCCGGTGTGGTTCCGGCTGGACTTTGGGGATTGCCTAATGTGGCAATCATTGACATCACTTCGAATCAAATTGAAGGTCCGATTACTTCCGATATCGGAAACGCCAAGAAGCTTGCGCAGTTGTTTGTGAGTTACAATCGGTTATCTAGCGAATTATCGGACGAGCCCGATTTTCGGTGGCAGACTTCGTCGTCGTTTTCGGTAGGTTTCAGCTCTGAATTTTCAGCTCAGGACTCGAACTCGGAGCCGAAACCGGTCGAGGACGACGCCGGAGTAGGAAAGAGAGCGGCGGTCGTGACTGTCAACACGCCGAGAGAATCGGAGACGGAAGACGACGGAGACCGGTCCAACTCGCTGCAATCCGAGCCGGTGGGATCGCCGGTTGCTTGGGCCTCGCCGCTGAAGGTGTCGAGTAAGAAAGGGATTTGCAGCAGGTGTGGAAAAGGGAACAGATTGAAGGAGAGGGAGTGGTGCTTGGTGTGCGACTCAAAGTACTGTAGCAACTGTTTGCTTAAAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

210

Amino Acids

22.72

Weight (kDa)

5.67

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	528
AasI	GACNNNNNNGTC	1 cut(s)	295
Acc16I	TGCGCA	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	392
AciI	CCGC	3 cut(s)	392, 395, 503
AclWI	GGATC	1 cut(s)	487
AcsI	RAATTY	2 cut(s)	42, 323
AcuI	CTGAAG	2 cut(s)	5, 527
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
AgeI	ACCGGT	2 cut(s)	358, 447
AgsI	TTSAA	2 cut(s)	179, 562
AluBI	AGCT	5 cut(s)	10, 217, 318, 332, 623
AluI	AGCT	5 cut(s)	10, 217, 318, 332, 623
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	422, 438
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	487
AoxI	GGCC	1 cut(s)	495
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	10, 460, 534
ApoI	RAATTY	2 cut(s)	42, 323
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AsiGI	ACCGGT	2 cut(s)	358, 447
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	3 cut(s)	182, 450, 495
AsuC2I	CCSGG	1 cut(s)	79
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	182, 450
BaeGI	GKGCMC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	447, 546
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	422, 438
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	601
BfuAI	ACCTGC	1 cut(s)	528
BisI	GCNGC	5 cut(s)	11, 393, 461, 503, 535
BlsI	GCNGC	5 cut(s)	12, 394, 462, 504, 536
BmcAI	AGTACT	1 cut(s)	599
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	2 cut(s)	182, 450
BmgT120I	GGNCC	3 cut(s)	182, 450, 495
BmiI	GGNNCC	2 cut(s)	117, 351
BmrFI	CCNGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	438
BsaWI	WCCGGW	3 cut(s)	107, 358, 447
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 89, 113, 119, 557, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 85, 279
Bse118I	RCCGGY	5 cut(s)	35, 358, 447, 472, 484
BseLI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
BseMII	CTCAG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	447, 546
Bsh1285I	CGRYCG	2 cut(s)	363, 399
BshFI	GGCC	1 cut(s)	497
BshTI	ACCGGT	2 cut(s)	358, 447
BsiEI	CGRYCG	2 cut(s)	363, 399
BsiHKAI	GWGCWC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
BsmAI	GTCTC	2 cut(s)	422, 438
BsmBI	CGTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	497
Bso31I	GGTCTC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	68, 273
Bsp143I	GATC	1 cut(s)	479
BspACI	CCGC	3 cut(s)	392, 395, 503
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	117, 351
BspMI	ACCTGC	1 cut(s)	528
BspPI	GGATC	1 cut(s)	487
BspT104I	TTCGAA	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	438
BsrBI	CCGCTC	1 cut(s)	392
BsrFI	RCCGGY	5 cut(s)	35, 358, 447, 472, 484
BssAI	RCCGGY	5 cut(s)	35, 358, 447, 472, 484
BssMI	GATC	1 cut(s)	479
BssNI	GRCGYC	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	406, 602, 611
BstACI	GRCGYC	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	60, 333
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	482
BstMAI	GTCTC	2 cut(s)	422, 438
BstMBI	GATC	1 cut(s)	479
BstMCI	CGRYCG	2 cut(s)	363, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 56, 469, 585
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	447, 546
BstV2I	GAAGAC	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	497
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	5 cut(s)	35, 358, 447, 472, 484
Cfr13I	GGNCC	3 cut(s)	182, 450, 495
CseI	GACGC	2 cut(s)	79, 380
Csp6I	GTAC	1 cut(s)	598
CspAI	ACCGGT	2 cut(s)	358, 447
CviAII	CATG	1 cut(s)	16
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	60, 333
DpnI	GATC	1 cut(s)	481
DpnII	GATC	1 cut(s)	479
DrdI	GACNNNNNNGTC	1 cut(s)	295
DseDI	GACNNNNNNGTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	182, 450
Eco57I	CTGAAG	2 cut(s)	5, 527
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	1 cut(s)	19
FaiI	YATR	2 cut(s)	17, 626
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	5 cut(s)	11, 393, 461, 503, 535
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	5 cut(s)	11, 393, 461, 503, 535
FspBI	CTAG	1 cut(s)	252
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	5 cut(s)	11, 393, 461, 503, 535
HaeIII	GGCC	1 cut(s)	497
HgaI	GACGC	2 cut(s)	79, 380
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	3 cut(s)	33, 91, 409
HindII	GTYRAC	3 cut(s)	33, 91, 409
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	4 cut(s)	169, 338, 422, 590
Hpy166II	GTNNAC	4 cut(s)	33, 66, 91, 409
Hpy188I	TCNGA	9 cut(s)	24, 186, 196, 203, 265, 322, 349, 427, 469
Hpy188III	TCNNGA	2 cut(s)	335, 400
Hpy8I	GTNNAC	4 cut(s)	33, 66, 91, 409
Hpy99I	CGWCG	5 cut(s)	73, 298, 301, 374, 443
HpyAV	CCTTC	3 cut(s)	173, 502, 556
HpyCH4III	ACNGT	3 cut(s)	406, 602, 611
HpyCH4V	TGCA	3 cut(s)	66, 463, 534
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 56, 469, 585
HpyF3I	CTNAG	2 cut(s)	60, 333
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	479
LmnI	GCTCC	2 cut(s)	7, 349
Lsp1109I	GCAGC	2 cut(s)	447, 546
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	236, 400
MalI	GATC	1 cut(s)	481
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	1 cut(s)	479
MboII	GAAGA	1 cut(s)	446
MhlI	GDGCHC	2 cut(s)	68, 273
MluCI	AATT	4 cut(s)	42, 174, 257, 323
MlyI	GAGTC	2 cut(s)	332, 584
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	4 cut(s)	113, 358, 508, 561
MseI	TTAA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	16, 56, 469, 585
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	479
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	117, 351
NmeAIII	GCCGAG	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	400
NsbI	TGCGCA	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	169, 422
PflFI	GACNNNGTC	1 cut(s)	292
PinAI	ACCGGT	2 cut(s)	358, 447
PkrI	GCNGC	5 cut(s)	12, 394, 462, 504, 536
PleI	GAGTC	2 cut(s)	332, 584
PpsI	GAGTC	2 cut(s)	332, 584
PspN4I	GGNNCC	2 cut(s)	117, 351
PspPI	GGNCC	3 cut(s)	182, 450, 495
PsyI	GACNNNGTC	1 cut(s)	292
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	5 cut(s)	11, 393, 461, 503, 535
Sau3AI	GATC	1 cut(s)	479
Sau96I	GGNCC	3 cut(s)	182, 450, 495
ScaI	AGTACT	1 cut(s)	599
SchI	GAGTC	2 cut(s)	332, 584
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	68, 273
SetI	ASST	9 cut(s)	12, 184, 219, 313, 320, 334, 513, 542, 625
SfcI	CTRYAG	1 cut(s)	601
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	2 cut(s)	182, 450
Sse9I	AATT	4 cut(s)	42, 174, 257, 323
SsiI	CCGC	3 cut(s)	392, 395, 503
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	406, 602, 611
TaqI	TCGA	4 cut(s)	167, 341, 363, 515
TasI	AATT	4 cut(s)	42, 174, 257, 323
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	2 cut(s)	395, 505
TfiI	GAWTC	2 cut(s)	169, 422
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	10, 460, 534
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	446, 456
Tth111I	GACNNNGTC	1 cut(s)	292
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	182, 450
XapI	RAATTY	2 cut(s)	42, 323
XspI	CTAG	1 cut(s)	252
ZrmI	AGTACT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.