Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Forward (+)

11417244 .. 11417543

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG136200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAGGAGCTGCTCATGCTTCAGAACAAGTTGACCGGCGAAATTCCGGCAAACTACGCGAAGTGCACGACTCTGACTTGGTTCAGGATCAACAACAACTCCCTCTCCGGTGTGGTTCCGGCTGGACTTTGGGGATTGCCGAATGTGGCAATCATTGACATCACTTCGAATCAAATTGAAGGTCCGATTACTTCCGATATCGGAAACGCCAAGAAGCTTGCGCAGTTGTTTGTGAGTTACAATCGGTTATCTGGCGAATTACCGGACGAGCCCGATTTTCGGTGGCAGACTTCGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

99

Amino Acids

10.95

Weight (kDa)

5.21

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	222
AccII	CGCG	1 cut(s)	59
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	179
AluBI	AGCT	2 cut(s)	10, 217
AluI	AGCT	2 cut(s)	10, 217
Alw21I	GWGCWC	1 cut(s)	68
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	95
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	167
BsaWI	WCCGGW	2 cut(s)	107, 262
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 89, 113, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	5 cut(s)	36, 47, 108, 119, 263
BslI	CCNNNNNNNGG	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	68, 273
Bsp143I	GATC	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 56
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	4 cut(s)	10, 122, 217, 271
CviKI_1	RGCY	4 cut(s)	10, 122, 217, 271
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	5
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	11
HapII	CCGG	5 cut(s)	36, 47, 108, 119, 263
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	70, 169
HpaII	CCGG	5 cut(s)	36, 47, 108, 119, 263
Hpy166II	GTNNAC	2 cut(s)	33, 66
Hpy188I	TCNGA	5 cut(s)	24, 75, 186, 196, 203
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	2 cut(s)	33, 66
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 56
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	8 cut(s)	49, 60, 70, 108, 121, 132, 237, 276
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	68, 273
MluCI	AATT	3 cut(s)	42, 174, 257
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	113
MspI	CCGG	5 cut(s)	36, 47, 108, 119, 263
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	16, 56
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	117
NsbI	TGCGCA	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	182
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	68, 273
SetI	ASST	4 cut(s)	12, 184, 219, 299
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	42, 174, 257
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	167, 293
TasI	AATT	3 cut(s)	42, 174, 257
TfiI	GAWTC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.