Rh7BG128600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003471
Physical Location & Seq
Forward (+)
9507090 .. 9507663
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG128600.1

Sequence Viewer

Length: 483 bp
ATGGCAAGGCTTAGCCTTACCACCAAACTGGCTATGGCCAGCACTATCTTTTTTTTGGGGTTGATTTTGCTTCAAAGCAGGCCCATGGCCGGTCTCGCCTACGAGACTCGTTTGGCTAGGCGCTTTGCGTTTTTCGAGGGACTGCCACTTCCATCTCCATCCAGCTCCGGGAGAGTCCCCGCCTGGAAGATCGCCGCTCTCGCGGCCGCTGCCGACGAGAAGATGAAAGTCCCAGCTTCTGGTTTCTCGGCGCCACCGCCTGCCTCTGCTTCGAACAGGAAGGCAAGTACTCTTACCACGACTATTTTTGTGGCGGCGTTTGTGATCTTCTGTCTTTTCTGTACCTATATTGTGTGCGCTTACTCTGTTGGATTTTTCGATTCCTCCCACGAGGACAACCCGGTGTACCCAAACCCGGCGGACCCCCTGCACCCGCTGACCGCTGACGAGTACGCTGCTTACCAACAGAACCAGGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.2

Weight (kDa)

8.49

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 197
AccII CGCG 1 cut(s) 203
AciI CCGC 9 cut(s) 180, 195, 203, 207, 257, 314, 419, 434, 441
AcoI YGGCCR 3 cut(s) 36, 87, 204
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 4 cut(s) 289, 343, 407, 452
AfiI CCNNNNNNNGG 4 cut(s) 89, 168, 239, 415
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 2 cut(s) 182, 471
AluBI AGCT 2 cut(s) 165, 236
AluI AGCT 2 cut(s) 165, 236
Alw26I GTCTC 2 cut(s) 98, 98
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 4 cut(s) 36, 80, 87, 204
ApeKI GCWGC 2 cut(s) 209, 455
AspLEI GCGC 3 cut(s) 123, 253, 359
AspS9I GGNCC 2 cut(s) 81, 421
AsuC2I CCSGG 3 cut(s) 169, 401, 416
AsuII TTCGAA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 1 cut(s) 250
BauI CACGAG 1 cut(s) 389
BbvI GCAGC 2 cut(s) 196, 442
BccI CCATC 2 cut(s) 160, 166
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciT130I CCWGG 2 cut(s) 184, 473
BcnI CCSGG 3 cut(s) 169, 401, 416
BcoDI GTCTC 2 cut(s) 98, 98
BfaI CTAG 1 cut(s) 117
BfoI RGCGCY 2 cut(s) 124, 254
BisI GCNGC 6 cut(s) 195, 204, 207, 210, 315, 456
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 6 cut(s) 196, 205, 208, 211, 316, 457
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 5 cut(s) 169, 184, 401, 416, 473
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 81, 421
BmiI GGNNCC 2 cut(s) 252, 423
BmrFI CCNGG 5 cut(s) 169, 184, 401, 416, 473
Bpu1102I GCTNAGC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 272
BpuMI CCSGG 3 cut(s) 169, 401, 416
BsaHI GRCGYC 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 84, 472
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 168, 239, 415
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 2 cut(s) 184, 473
BseDI CCNNGG 2 cut(s) 84, 472
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 4 cut(s) 89, 168, 239, 415
BseNI ACTGG 1 cut(s) 33
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 196, 442
BseYI CCCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 4 cut(s) 38, 82, 89, 206
BshNI GGYRCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 4 cut(s) 90, 168, 401, 416
BslFI GGGAC 3 cut(s) 153, 161, 215
BslI CCNNNNNNNGG 4 cut(s) 89, 168, 239, 415
BsmAI GTCTC 2 cut(s) 98, 98
BsmFI GGGAC 3 cut(s) 153, 161, 215
BsnI GGCC 4 cut(s) 38, 82, 89, 206
Bso31I GGTCTC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 272
Bsp143I GATC 2 cut(s) 189, 324
Bsp1720I GCTNAGC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 9 cut(s) 180, 195, 203, 207, 257, 314, 419, 434, 441
BspANI GGCC 4 cut(s) 38, 82, 89, 206
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 2 cut(s) 252, 423
BspT104I TTCGAA 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 84, 472
BssMI GATC 2 cut(s) 189, 324
BssNI GRCGYC 1 cut(s) 251
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 184, 473
BstACI GRCGYC 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 40, 80, 261
BstDEI CTNAG 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 2 cut(s) 124, 254
BstHHI GCGC 3 cut(s) 123, 253, 359
BstKTI GATC 2 cut(s) 192, 327
BstMAI GTCTC 2 cut(s) 98, 98
BstMBI GATC 2 cut(s) 189, 324
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 4 cut(s) 95, 200, 203, 209
BstNI CCWGG 2 cut(s) 184, 473
BstSCI CCNGG 5 cut(s) 167, 182, 399, 414, 471
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 196, 442
BstXI CCANNNNNNTGG 1 cut(s) 28
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 4 cut(s) 38, 82, 89, 206
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 158
Cac8I GCNNGC 3 cut(s) 40, 80, 261
CaiI CAGNNNCTG 1 cut(s) 239
CciNI GCGGCCGC 1 cut(s) 204
CfoI GCGC 3 cut(s) 123, 253, 359
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 81, 421
Csp6I GTAC 4 cut(s) 288, 342, 406, 451
CviAII CATG 1 cut(s) 85
CviQI GTAC 4 cut(s) 288, 342, 406, 451
DdeI CTNAG 1 cut(s) 11
DinI GGCGCC 1 cut(s) 252
DpnI GATC 2 cut(s) 191, 326
DpnII GATC 2 cut(s) 189, 324
EaeI YGGCCR 3 cut(s) 36, 87, 204
EagI CGGCCG 1 cut(s) 204
EciI GGCGGA 1 cut(s) 434
EclXI CGGCCG 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 182, 471
EcoT14I CCWWGG 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 252
EheI GGCGCC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 88
FaiI YATR 3 cut(s) 35, 86, 348
FaqI GGGAC 3 cut(s) 153, 161, 215
FatI CATG 1 cut(s) 84
FauI CCCGC 2 cut(s) 187, 441
Fnu4HI GCNGC 6 cut(s) 195, 204, 207, 210, 315, 456
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 6 cut(s) 195, 204, 207, 210, 315, 456
FspBI CTAG 1 cut(s) 117
GlaI GCGC 3 cut(s) 122, 252, 358
GluI GCNGC 6 cut(s) 195, 204, 207, 210, 315, 456
GsaI CCCAGC 1 cut(s) 236
HaeII RGCGCY 2 cut(s) 124, 254
HaeIII GGCC 4 cut(s) 38, 82, 89, 206
HapII CCGG 4 cut(s) 90, 168, 401, 416
HhaI GCGC 3 cut(s) 123, 253, 359
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 3 cut(s) 121, 251, 357
HinP1I GCGC 3 cut(s) 121, 251, 357
HinfI GANTC 3 cut(s) 106, 174, 380
HpaII CCGG 4 cut(s) 90, 168, 401, 416
Hpy166II GTNNAC 1 cut(s) 406
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 430
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 200, 203, 209
HpyF3I CTNAG 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 3 cut(s) 121, 251, 357
KasI GGCGCC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 189, 324
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 2 cut(s) 196, 442
MaeI CTAG 1 cut(s) 117
MalI GATC 2 cut(s) 191, 326
MbiI CCGCTC 1 cut(s) 197
MboI GATC 2 cut(s) 189, 324
MboII GAAGA 3 cut(s) 199, 232, 319
MlsI TGGCCA 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 38
Mly113I GGCGCC 1 cut(s) 251
MlyI GAGTC 2 cut(s) 100, 183
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 4 cut(s) 130, 274, 385, 394
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 3 cut(s) 209, 436, 443
MspI CCGG 4 cut(s) 90, 168, 401, 416
MspR9I CCNGG 5 cut(s) 169, 184, 401, 416, 473
MvaI CCWGG 2 cut(s) 184, 473
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 95, 200, 203, 209
NarI GGCGCC 1 cut(s) 251
NciI CCSGG 3 cut(s) 169, 401, 416
NcoI CCATGG 1 cut(s) 84
NdeII GATC 2 cut(s) 189, 324
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 252, 423
NmeAIII GCCGAG 1 cut(s) 227
NotI GCGGCCGC 1 cut(s) 204
NspV TTCGAA 1 cut(s) 272
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 167
PkrI GCNGC 6 cut(s) 196, 205, 208, 211, 316, 457
PleI GAGTC 2 cut(s) 100, 182
PluTI GGCGCC 1 cut(s) 254
PpsI GAGTC 2 cut(s) 100, 182
Psp6I CCWGG 2 cut(s) 182, 471
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 2 cut(s) 182, 471
PspN4I GGNNCC 2 cut(s) 252, 423
PspPI GGNCC 2 cut(s) 81, 421
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 4 cut(s) 289, 343, 407, 452
RsaNI GTAC 4 cut(s) 288, 342, 406, 451
SatI GCNGC 6 cut(s) 195, 204, 207, 210, 315, 456
Sau3AI GATC 2 cut(s) 189, 324
Sau96I GGNCC 2 cut(s) 81, 421
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 2 cut(s) 100, 183
ScrFI CCNGG 5 cut(s) 169, 184, 401, 416, 473
SetI ASST 3 cut(s) 167, 238, 347
SfoI GGCGCC 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 1 cut(s) 421
SsiI CCGC 9 cut(s) 180, 195, 203, 207, 257, 314, 419, 434, 441
SspDI GGCGCC 1 cut(s) 250
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 5 cut(s) 167, 182, 399, 414, 471
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 3 cut(s) 135, 272, 378
TatI WGTACW 1 cut(s) 287
TauI GCSGC 4 cut(s) 197, 206, 209, 317
TfiI GAWTC 1 cut(s) 380
TseI GCWGC 2 cut(s) 209, 455
TspDTI ATGAA 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XspI CTAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.