Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

63928829 .. 63930536

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035269

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCGAGTGTGATGAGGGTCAACAACAACTCCCTCTCCGGTGTGGTTCCTGCTGGACTTTGGGGATTGCCGAATGTGGCAATCATTGACATCACTTCGAATCAAATTGAAGGAAGCGGAAAAGCTAAGAAGCTTGCGCAGTTGTTTGTGAGTTACAATCGGTTATCTGGCGAATTACCGGACGAGCCCGATTTTCGGTGGCAGACTTCGACGTCATTTTCGGTAGGTTTCAGCTCTGAATTTTCAGCTCAGGACTCGAACTCAAAGCAGAAACTGGTCGAGGACGACGCCGGAGGAGGAAAGAGAGCGACGGTCGTGACTTTCAACACGCCGAGAGAATCGGAGACGGAAGACGACGAAGACCACCGGTCCTCGTCGCCGCAATCGGAGCCGGTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

134

Amino Acids

14.34

Weight (kDa)

4.62

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	211
AatII	GACGTC	1 cut(s)	215
Acc16I	TGCGCA	1 cut(s)	138
AciI	CCGC	2 cut(s)	117, 380
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	2 cut(s)	212, 288
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgeI	ACCGGT	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	110, 325
AhdI	GACNNNNNGTC	1 cut(s)	367
AluBI	AGCT	4 cut(s)	125, 133, 234, 248
AluI	AGCT	4 cut(s)	125, 133, 234, 248
Alw26I	GTCTC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AsiGI	ACCGGT	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	369
AsuII	TTCGAA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	2 cut(s)	357, 366
BcoDI	GTCTC	1 cut(s)	338
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	369
BmeRI	GACNNNNNGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	48, 390
BpiI	GAAGAC	2 cut(s)	357, 366
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	98
BsaHI	GRCGYC	2 cut(s)	212, 288
BsaWI	WCCGGW	3 cut(s)	38, 178, 366
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 20, 44, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse118I	RCCGGY	2 cut(s)	366, 391
Bse1I	ACTGG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	315
BshTI	ACCGGT	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	315
BsiSI	CCGG	5 cut(s)	39, 179, 291, 367, 392
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	338
BsmBI	CGTCTC	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	117, 380
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	48, 390
BspT104I	TTCGAA	1 cut(s)	98
BsrFI	RCCGGY	2 cut(s)	366, 391
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	2 cut(s)	366, 391
BssNI	GRCGYC	2 cut(s)	212, 288
Bst4CI	ACNGT	1 cut(s)	313
BstACI	GRCGYC	2 cut(s)	212, 288
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	126, 249
BstHHI	GCGC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	338
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstV2I	GAAGAC	2 cut(s)	357, 366
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	2 cut(s)	366, 391
Cfr13I	GGNCC	1 cut(s)	369
CseI	GACGC	1 cut(s)	296
CspAI	ACCGGT	1 cut(s)	366
CviJI	RGCY	6 cut(s)	125, 133, 187, 234, 248, 391
CviKI_1	RGCY	6 cut(s)	125, 133, 187, 234, 248, 391
DdeI	CTNAG	2 cut(s)	126, 249
DrdI	GACNNNNNNGTC	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	380
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	380
HapII	CCGG	5 cut(s)	39, 179, 291, 367, 392
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	2 cut(s)	212, 288
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	100, 254, 338
HpaII	CCGG	5 cut(s)	39, 179, 291, 367, 392
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	238, 343, 388
Hpy188III	TCNNGA	2 cut(s)	251, 316
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	5 cut(s)	214, 290, 313, 359, 379
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	2 cut(s)	126, 249
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	2 cut(s)	212, 288
HspAI	GCGC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	9 cut(s)	39, 52, 63, 153, 192, 236, 260, 304, 380
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	152, 316
MboII	GAAGA	2 cut(s)	362, 371
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	3 cut(s)	105, 173, 239
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	9, 44, 274, 287, 290, 382
MspI	CCGG	5 cut(s)	39, 179, 291, 367, 392
MwoI	GCNNNNNNNGC	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	48, 390
NmeAIII	GCCGAG	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	316
NsbI	TGCGCA	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	100, 338
PinAI	ACCGGT	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	48, 390
PspPI	GGNCC	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	274
SatI	GCNGC	1 cut(s)	380
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	6 cut(s)	127, 135, 215, 229, 236, 250
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	1 cut(s)	369
Sse9I	AATT	3 cut(s)	105, 173, 239
SsiI	CCGC	2 cut(s)	117, 380
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	5 cut(s)	5, 98, 209, 257, 279
TasI	AATT	3 cut(s)	105, 173, 239
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	100, 338
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.