Rh7BG129500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003471
Physical Location & Seq
Forward (+)
9597897 .. 9598862
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG129500.1

Sequence Viewer

Length: 759 bp
ATGGCGAGCTTGAGCCTCAGGACCAAGCTCGCTCTGGCAACCACCGTTCTCTTCCTTGCAACCAGCCTCATGCTCCAAAACCAGCCCATCGCTGATCTCCGTCAAGAGACGCGCCTGGCCAGACGCTTCGGTTTCGGCTATGGGTCCCCCCCTTCCCCTGCATCAACCACACCGCCATCACGCTCCAGCTCGGGGATGCTCACCGACGCCTCCACCGTGGATAACTCAGGGAAGATCACGTCCGGTCCGCTCCCCGACGCCGACGCAGACGCCGCCGCCATCTCCGAGGAGGTCACCTTCACAGCTCTCGCCGACGCCGCCATCGTCGACCACTCGAGGATCACCTCTACTCCATGTGTCCCGGTGGCTTCAGCTCCGGCTCCTAAGCCTTCCCCCCGCCAGAAGAGTGAGATGACAAAAATAATGTCAGTGTTATTCTTCCTGGTCTTTGTTTTCCTTTGCTGCTACCTTCTGTGCGTGTTTGTTATGGGAGTGATAGACCCAGATATATTGACTGGATGGGAGAACGGACTGACTGCACGGAGGAATTCATACCTGACTTCACAGAACCGTTTCTGCAAAATAGCAAGGCACAATCTGGGCGCTATTTACAATGTTGGCTTGGGTCTTTTCCTCATGATGTTAGCCGTGCACTTCCTGTGGCCTCTGATAGCCTTTTTGGGTCACGCCCACACATGGGCACCGGATCTGGAGGATATGGAGCTCTTGGTGGGAGGAATGGGGGCGATAGTACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.14

Weight (kDa)

6.95

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 700
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 327
AccII CGCG 1 cut(s) 112
AciI CCGC 6 cut(s) 173, 248, 273, 276, 318, 397
AclWI GGATC 2 cut(s) 347, 714
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 4 cut(s) 207, 258, 270, 315
AfaI GTAC 1 cut(s) 753
AfiI CCNNNNNNNGG 3 cut(s) 192, 696, 697
AjiI CACGTC 1 cut(s) 240
AjnI CCWGG 2 cut(s) 114, 441
AluBI AGCT 6 cut(s) 9, 28, 189, 305, 374, 724
AluI AGCT 6 cut(s) 9, 28, 189, 305, 374, 724
Alw21I GWGCWC 2 cut(s) 654, 726
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 650
AlwI GGATC 2 cut(s) 347, 714
Ama87I CYCGRG 2 cut(s) 190, 334
AoxI GGCC 2 cut(s) 117, 662
ApaLI GTGCAC 1 cut(s) 650
ApeKI GCWGC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 547
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
Asp700I GAANNNNTTC 1 cut(s) 572
AspLEI GCGC 2 cut(s) 114, 605
AspS9I GGNCC 3 cut(s) 21, 144, 245
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 3 cut(s) 193, 286, 334
AvaI CYCGRG 2 cut(s) 190, 334
AvaII GGWCC 3 cut(s) 21, 144, 245
AxyI CCTNAGG 1 cut(s) 17
BaeGI GKGCMC 2 cut(s) 654, 703
BalI TGGCCA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 700
BanII GRGCYC 1 cut(s) 726
Bbv12I GWGCWC 2 cut(s) 654, 726
BbvI GCAGC 1 cut(s) 449
BccI CCATC 5 cut(s) 95, 184, 287, 329, 513
BceAI ACGGC 1 cut(s) 632
BciT130I CCWGG 2 cut(s) 116, 443
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 606
BisI GCNGC 4 cut(s) 273, 276, 318, 463
BlsI GCNGC 4 cut(s) 274, 277, 319, 464
Bme1390I CCNGG 3 cut(s) 116, 362, 443
Bme18I GGWCC 3 cut(s) 21, 144, 245
BmeT110I CYCGRG 2 cut(s) 190, 334
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 21, 144, 245
BmiI GGNNCC 4 cut(s) 145, 146, 381, 702
BmrFI CCNGG 3 cut(s) 116, 362, 443
BmsI GCATC 2 cut(s) 170, 186
BpmI CTGGAG 2 cut(s) 169, 731
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 362
BsaHI GRCGYC 4 cut(s) 207, 258, 270, 315
BsaJI CCNNGG 2 cut(s) 216, 285
BsaWI WCCGGW 2 cut(s) 242, 703
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 696, 697
Bse1I ACTGG 1 cut(s) 520
Bse21I CCTNAGG 1 cut(s) 17
BseBI CCWGG 2 cut(s) 116, 443
BseDI CCNNGG 2 cut(s) 216, 285
BseGI GGATG 2 cut(s) 201, 524
BseLI CCNNNNNNNGG 3 cut(s) 192, 696, 697
BseMII CTCAG 2 cut(s) 31, 240
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 2 cut(s) 654, 703
BseXI GCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 119, 664
BshNI GGYRCC 1 cut(s) 700
BsiHKAI GWGCWC 2 cut(s) 654, 726
BsiHKCI CYCGRG 2 cut(s) 190, 334
BsiSI CCGG 4 cut(s) 243, 362, 377, 704
BslFI GGGAC 2 cut(s) 130, 344
BslI CCNNNNNNNGG 3 cut(s) 192, 696, 697
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 130, 344
BsnI GGCC 2 cut(s) 119, 664
BsoBI CYCGRG 2 cut(s) 190, 334
Bsp1286I GDGCHC 3 cut(s) 654, 703, 726
Bsp143I GATC 4 cut(s) 94, 234, 339, 706
BspACI CCGC 6 cut(s) 173, 248, 273, 276, 318, 397
BspANI GGCC 2 cut(s) 119, 664
BspCNI CTCAG 2 cut(s) 30, 239
BspFNI CGCG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 4 cut(s) 145, 146, 381, 702
BspPI GGATC 2 cut(s) 347, 714
BspT107I GGYRCC 1 cut(s) 700
BsrBI CCGCTC 1 cut(s) 250
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 2 cut(s) 216, 285
BssMI GATC 4 cut(s) 94, 234, 339, 706
BssNI GRCGYC 4 cut(s) 207, 258, 270, 315
Bst2UI CCWGG 2 cut(s) 116, 443
Bst4CI ACNGT 3 cut(s) 46, 217, 572
Bst6I CTCTTC 2 cut(s) 56, 398
BstACI GRCGYC 4 cut(s) 207, 258, 270, 315
BstC8I GCNNGC 2 cut(s) 7, 30
BstDEI CTNAG 3 cut(s) 17, 226, 384
BstDSI CCRYGG 1 cut(s) 216
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 2 cut(s) 201, 524
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 2 cut(s) 114, 605
BstKTI GATC 4 cut(s) 97, 237, 342, 709
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 4 cut(s) 94, 234, 339, 706
BstMWI GCNNNNNNNGC 2 cut(s) 272, 317
BstNI CCWGG 2 cut(s) 116, 443
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 114, 360, 441
BstSLI GKGCMC 2 cut(s) 654, 703
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
Bsu36I CCTNAGG 1 cut(s) 17
BsuRI GGCC 2 cut(s) 119, 664
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 73
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 201, 524
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 7, 30
CciI TCATGA 1 cut(s) 636
CfoI GCGC 2 cut(s) 114, 605
Cfr13I GGNCC 3 cut(s) 21, 144, 245
CpoI CGGWCCG 1 cut(s) 245
CseI GACGC 7 cut(s) 118, 132, 215, 266, 272, 278, 323
Csp6I GTAC 1 cut(s) 752
CspI CGGWCCG 1 cut(s) 245
CviAII CATG 4 cut(s) 70, 354, 637, 696
CviQI GTAC 1 cut(s) 752
DdeI CTNAG 3 cut(s) 17, 226, 384
DpnI GATC 4 cut(s) 96, 236, 341, 708
DpnII GATC 4 cut(s) 94, 234, 339, 706
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 56, 398
EarI CTCTTC 2 cut(s) 56, 398
Ecl136II GAGCTC 1 cut(s) 724
Eco24I GRGCYC 1 cut(s) 726
Eco47I GGWCC 3 cut(s) 21, 144, 245
Eco53kI GAGCTC 1 cut(s) 724
Eco57I CTGAAG 1 cut(s) 354
Eco81I CCTNAGG 1 cut(s) 17
Eco88I CYCGRG 2 cut(s) 190, 334
Eco91I GGTNACC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 724
EcoO109I RGGNCCY 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 114, 441
EcoT38I GRGCYC 1 cut(s) 726
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 4 cut(s) 73, 357, 640, 699
FaiI YATR 9 cut(s) 71, 141, 355, 488, 509, 553, 638, 697, 719
FaqI GGGAC 2 cut(s) 130, 344
FatI CATG 4 cut(s) 69, 353, 636, 695
FauI CCCGC 1 cut(s) 404
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 273, 276, 318, 463
FokI GGATG 2 cut(s) 208, 531
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 4 cut(s) 273, 276, 318, 463
GlaI GCGC 2 cut(s) 113, 604
GluI GCNGC 4 cut(s) 273, 276, 318, 463
GsuI CTGGAG 2 cut(s) 169, 731
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 2 cut(s) 119, 664
HapII CCGG 4 cut(s) 243, 362, 377, 704
HgaI GACGC 7 cut(s) 118, 132, 215, 266, 272, 278, 323
HhaI GCGC 2 cut(s) 114, 605
Hin1I GRCGYC 4 cut(s) 207, 258, 270, 315
Hin1II CATG 4 cut(s) 73, 357, 640, 699
Hin6I GCGC 2 cut(s) 112, 603
HinP1I GCGC 2 cut(s) 112, 603
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HpaII CCGG 4 cut(s) 243, 362, 377, 704
HphI GGTGA 3 cut(s) 193, 286, 334
Hpy166II GTNNAC 2 cut(s) 328, 652
Hpy188I TCNGA 2 cut(s) 286, 669
Hpy188III TCNNGA 4 cut(s) 19, 104, 637, 710
Hpy8I GTNNAC 2 cut(s) 328, 652
Hpy99I CGWCG 5 cut(s) 209, 260, 266, 317, 329
HpyAV CCTTC 4 cut(s) 162, 307, 399, 479
HpyCH4III ACNGT 3 cut(s) 46, 217, 572
HpyCH4IV ACGT 2 cut(s) 239, 754
HpyCH4V TGCA 5 cut(s) 59, 161, 539, 579, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 317
HpyF3I CTNAG 3 cut(s) 17, 226, 384
HpySE526I ACGT 2 cut(s) 239, 754
Hsp92I GRCGYC 4 cut(s) 207, 258, 270, 315
Hsp92II CATG 4 cut(s) 73, 357, 640, 699
HspAI GCGC 2 cut(s) 112, 603
KflI GGGWCCC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 94, 234, 339, 706
LmnI GCTCC 6 cut(s) 78, 188, 255, 379, 385, 721
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 2 cut(s) 170, 186
MaeII ACGT 2 cut(s) 239, 754
MaeIII GTNAC 2 cut(s) 292, 683
MalI GATC 4 cut(s) 96, 236, 341, 708
MbiI CCGCTC 1 cut(s) 250
MboI GATC 4 cut(s) 94, 234, 339, 706
MboII GAAGA 4 cut(s) 43, 244, 415, 430
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 3 cut(s) 654, 703, 726
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 1 cut(s) 547
MluNI TGGCCA 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 572
MscI TGGCCA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 4 cut(s) 243, 362, 377, 704
MspR9I CCNGG 3 cut(s) 116, 362, 443
MvaI CCWGG 2 cut(s) 116, 443
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 272, 317
NciI CCSGG 1 cut(s) 362
NdeII GATC 4 cut(s) 94, 234, 339, 706
NlaIII CATG 4 cut(s) 73, 357, 640, 699
NlaIV GGNNCC 4 cut(s) 145, 146, 381, 702
NmuCI GTSAC 2 cut(s) 292, 683
PaeR7I CTCGAG 1 cut(s) 334
PagI TCATGA 1 cut(s) 636
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 321
PdmI GAANNNNTTC 1 cut(s) 572
PkrI GCNGC 4 cut(s) 274, 277, 319, 464
PpuMI RGGWCCY 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 726
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 114, 441
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 114, 441
PspN4I GGNNCC 4 cut(s) 145, 146, 381, 702
PspPI GGNCC 3 cut(s) 21, 144, 245
PspPPI RGGWCCY 1 cut(s) 144
PspXI VCTCGAGB 1 cut(s) 334
PsuI RGATCY 1 cut(s) 706
RsaI GTAC 1 cut(s) 753
RsaNI GTAC 1 cut(s) 752
Rsr2I CGGWCCG 1 cut(s) 245
RsrII CGGWCCG 1 cut(s) 245
SacI GAGCTC 1 cut(s) 726
SalI GTCGAC 1 cut(s) 326
SatI GCNGC 4 cut(s) 273, 276, 318, 463
Sau3AI GATC 4 cut(s) 94, 234, 339, 706
Sau96I GGNCC 3 cut(s) 21, 144, 245
ScrFI CCNGG 3 cut(s) 116, 362, 443
SduI GDGCHC 3 cut(s) 654, 703, 726
SfaNI GCATC 2 cut(s) 170, 186
Sfr274I CTCGAG 1 cut(s) 334
SinI GGWCC 3 cut(s) 21, 144, 245
SlaI CTCGAG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 10, 334
SmoI CTYRAG 2 cut(s) 10, 334
Sse9I AATT 1 cut(s) 547
SsiI CCGC 6 cut(s) 173, 248, 273, 276, 318, 397
SstI GAGCTC 1 cut(s) 726
StyD4I CCNGG 3 cut(s) 114, 360, 441
TaaI ACNGT 3 cut(s) 46, 217, 572
TaiI ACGT 2 cut(s) 242, 757
TaqI TCGA 2 cut(s) 327, 335
TasI AATT 1 cut(s) 547
TauI GCSGC 3 cut(s) 275, 278, 320
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 2 cut(s) 292, 683
TseI GCWGC 1 cut(s) 462
Tsp45I GTSAC 2 cut(s) 292, 683
TspDTI ATGAA 1 cut(s) 540
TspGWI ACGGA 3 cut(s) 89, 543, 556
TspRI CASTG 1 cut(s) 435
VneI GTGCAC 1 cut(s) 650
VpaK11BI GGWCC 3 cut(s) 21, 144, 245
XapI RAATTY 1 cut(s) 547
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.