Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004510.1

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

19744 .. 20860

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004510.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ctgtgctccggtgaccagtggccggtgcggactccggcgaccggtgacctgattccggcgaccggtgataggattccggcgacctgtgaccggattccggcgaccgttgaccggattccggaaaccggtaaccgaaatccagcgaccgatgaccggaatccggaatccggctattattgccccccaggtcaacaactccctctccggtgtggttccggctggagtttggggattgccgaatgtggcgaattaccggacaagcccgattttcggtggcagacttcgacgtcgttttcggtaggtttcagctctgaattttcagctcaggactcgaactcggaatcgaaaccggtcgaggacgacgctggaggaggaaagagcatcactttcaacacgccgagagaatcggagacggaagacgacggcgaccggtcctcgttgccgcaatcggagctggtgggatcgccggttgcttgggcctcgccgataaaggtagcaagtaagagagggatttgcagcaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

174

Amino Acids

18.58

Weight (kDa)

4.52

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	510
AasI	GACNNNNNNGTC	1 cut(s)	286
AatII	GACGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	510
AccIII	TCCGGA	2 cut(s)	118, 160
AciI	CCGC	2 cut(s)	28, 443
AclWI	GGATC	1 cut(s)	469
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	287
AgeI	ACCGGT	5 cut(s)	41, 62, 125, 349, 429
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	3 cut(s)	309, 323, 454
AluI	AGCT	3 cut(s)	309, 323, 454
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	469
Aor13HI	TCCGGA	2 cut(s)	118, 160
AoxI	GGCC	2 cut(s)	20, 477
ApeKI	GCWGC	1 cut(s)	516
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
AsiGI	ACCGGT	5 cut(s)	41, 62, 125, 349, 429
AspS9I	GGNCC	2 cut(s)	432, 477
AsuHPI	GGTGA	3 cut(s)	23, 56, 77
AvaII	GGWCC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	8
BceAI	ACGGC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	510
BisI	GCNGC	2 cut(s)	443, 517
BlsI	GCNGC	2 cut(s)	444, 518
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	432, 477
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	2 cut(s)	241, 387
Bpu10I	CCTNAGC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bse118I	RCCGGY	7 cut(s)	22, 41, 62, 125, 349, 429, 466
Bse1I	ACTGG	1 cut(s)	16
BseAI	TCCGGA	2 cut(s)	118, 160
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	384
Bsh1285I	CGRYCG	6 cut(s)	42, 63, 105, 147, 354, 430
BshFI	GGCC	2 cut(s)	22, 479
BshTI	ACCGGT	5 cut(s)	41, 62, 125, 349, 429
BsiEI	CGRYCG	6 cut(s)	42, 63, 105, 147, 354, 430
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	404
BsmBI	CGTCTC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	22, 479
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	2 cut(s)	118, 160
Bsp143I	GATC	1 cut(s)	461
BspACI	CCGC	2 cut(s)	28, 443
BspANI	GGCC	2 cut(s)	22, 479
BspCNI	CTCAG	1 cut(s)	337
BspEI	TCCGGA	2 cut(s)	118, 160
BspLI	GGNNCC	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	469
BsrFI	RCCGGY	7 cut(s)	22, 41, 62, 125, 349, 429, 466
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	7 cut(s)	22, 41, 62, 125, 349, 429, 466
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	461
BssNI	GRCGYC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	324
BstEII	GGTNACC	3 cut(s)	11, 44, 128
BstKTI	GATC	1 cut(s)	464
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	461
BstMCI	CGRYCG	6 cut(s)	42, 63, 105, 147, 354, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 451
BstNI	CCWGG	1 cut(s)	186
BstPI	GGTNACC	3 cut(s)	11, 44, 128
BstSCI	CCNGG	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	22, 479
BtsIMutI	CAGTG	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	510
Cfr10I	RCCGGY	7 cut(s)	22, 41, 62, 125, 349, 429, 466
Cfr13I	GGNCC	2 cut(s)	432, 477
CseI	GACGC	1 cut(s)	371
CspAI	ACCGGT	5 cut(s)	41, 62, 125, 349, 429
CviJI	RGCY	8 cut(s)	22, 171, 219, 262, 309, 323, 454, 479
CviKI_1	RGCY	8 cut(s)	22, 171, 219, 262, 309, 323, 454, 479
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	432
Eco91I	GGTNACC	3 cut(s)	11, 44, 128
EcoO65I	GGTNACC	3 cut(s)	11, 44, 128
EcoRII	CCWGG	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	404
Fnu4HI	GCNGC	2 cut(s)	443, 517
Fsp4HI	GCNGC	2 cut(s)	443, 517
GluI	GCNGC	2 cut(s)	443, 517
GsuI	CTGGAG	2 cut(s)	241, 387
HaeIII	GGCC	2 cut(s)	22, 479
HgaI	GACGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	287
HincII	GTYRAC	2 cut(s)	109, 191
HindII	GTYRAC	2 cut(s)	109, 191
HphI	GGTGA	3 cut(s)	23, 56, 77
Hpy166II	GTNNAC	2 cut(s)	109, 191
Hpy188I	TCNGA	4 cut(s)	313, 340, 409, 451
Hpy188III	TCNNGA	3 cut(s)	119, 161, 326
Hpy8I	GTNNAC	2 cut(s)	109, 191
Hpy99I	CGWCG	4 cut(s)	289, 292, 365, 425
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 451
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	287
Kpn2I	TCCGGA	2 cut(s)	118, 160
Kzo9I	GATC	1 cut(s)	461
LmnI	GCTCC	2 cut(s)	11, 451
LweI	GCATC	1 cut(s)	390
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	4 cut(s)	11, 44, 86, 128
MalI	GATC	1 cut(s)	463
MboI	GATC	1 cut(s)	461
MboII	GAAGA	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	248, 314
MlyI	GAGTC	2 cut(s)	25, 323
MnlI	CCTC	7 cut(s)	210, 349, 362, 365, 445, 490, 500
MroI	TCCGGA	2 cut(s)	118, 160
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	177, 451
NdeII	GATC	1 cut(s)	461
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	3 cut(s)	11, 44, 86
PaqCI	CACCTGC	1 cut(s)	510
PfeI	GAWTC	8 cut(s)	52, 73, 94, 115, 157, 164, 341, 404
PinAI	ACCGGT	5 cut(s)	41, 62, 125, 349, 429
PkrI	GCNGC	2 cut(s)	444, 518
PleI	GAGTC	2 cut(s)	25, 323
PpsI	GAGTC	2 cut(s)	25, 323
Psp6I	CCWGG	1 cut(s)	184
PspEI	GGTNACC	3 cut(s)	11, 44, 128
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	432, 477
SatI	GCNGC	2 cut(s)	443, 517
Sau3AI	GATC	1 cut(s)	461
Sau96I	GGNCC	2 cut(s)	432, 477
SchI	GAGTC	2 cut(s)	25, 323
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	432
Sse9I	AATT	2 cut(s)	248, 314
SsiI	CCGC	2 cut(s)	28, 443
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	284, 332, 344, 354
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	2 cut(s)	248, 314
TauI	GCSGC	1 cut(s)	445
TfiI	GAWTC	8 cut(s)	52, 73, 94, 115, 157, 164, 341, 404
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	3 cut(s)	11, 44, 86
TseI	GCWGC	1 cut(s)	516
Tsp45I	GTSAC	3 cut(s)	11, 44, 86
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.