Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

65223810 .. 65224197

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTGACCCGGTTCGGGGTCAACAACAACTCCCTCTCCGGTGTGGTTCCGGTGGACTTTGGGGATTGCCGAATGTGGCAATCATTGACATCACTTCGAATCAAATTGAAGGTCCGATTACTTCCGATATCGGAAACGCCAAGAAGCTTGCGCGATTGTTTCAGCTCCGAATTTTCAGCTCGGGACTCAAACTCGGAGCCGAAACCGGTCGAGGACGACGCCGGAGAAGGAAAGAGAGCGGCGGTGGTGACTTTCAACACGCCGAGAGAATCGGAGACGGAAGACGACGGCGGCCGGTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

101

Amino Acids

11.15

Weight (kDa)

5.13

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	239
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	239, 242, 291
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	15, 16
AgeI	ACCGGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	109, 256
AluBI	AGCT	3 cut(s)	147, 165, 179
AluI	AGCT	3 cut(s)	147, 165, 179
Alw26I	GTCTC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AsiGI	ACCGGT	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	112, 297
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	2 cut(s)	112, 297
BbsI	GAAGAC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	240, 292
BlsI	GCNGC	2 cut(s)	241, 293
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	2 cut(s)	112, 297
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	112, 297
BmiI	GGNNCC	2 cut(s)	48, 198
BmrFI	CCNGG	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	219
BsaWI	WCCGGW	3 cut(s)	38, 49, 205
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 20, 44, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 16
Bse118I	RCCGGY	2 cut(s)	205, 294
BseLI	CCNNNNNNNGG	2 cut(s)	15, 16
BseX3I	CGGCCG	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	2 cut(s)	210, 295
BshFI	GGCC	1 cut(s)	294
BshTI	ACCGGT	1 cut(s)	205
BsiEI	CGRYCG	2 cut(s)	210, 295
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	6 cut(s)	10, 39, 50, 206, 222, 295
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	15, 16
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	97
BspACI	CCGC	3 cut(s)	239, 242, 291
BspANI	GGCC	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	48, 198
BspT104I	TTCGAA	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	205, 294
BssAI	RCCGGY	2 cut(s)	205, 294
BssNI	GRCGYC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	269
BstMCI	CGRYCG	2 cut(s)	210, 295
BstSCI	CCNGG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	288
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	2 cut(s)	205, 294
Cfr13I	GGNCC	2 cut(s)	112, 297
CseI	GACGC	1 cut(s)	227
CspAI	ACCGGT	1 cut(s)	205
CviJI	RGCY	5 cut(s)	147, 165, 179, 199, 294
CviKI_1	RGCY	5 cut(s)	147, 165, 179, 199, 294
DdeI	CTNAG	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	292
EagI	CGGCCG	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	112, 297
Eco52I	CGGCCG	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	269
FaqI	GGGAC	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	240, 292
Fsp4HI	GCNGC	2 cut(s)	240, 292
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	240, 292
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	6 cut(s)	10, 39, 50, 206, 222, 295
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	3 cut(s)	99, 185, 269
HpaII	CCGG	6 cut(s)	10, 39, 50, 206, 222, 295
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	22, 55
Hpy188I	TCNGA	6 cut(s)	116, 126, 133, 169, 196, 274
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	22, 55
Hpy99I	CGWCG	2 cut(s)	221, 290
HpyAV	CCTTC	2 cut(s)	103, 221
HpyF3I	CTNAG	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	219
HspAI	GCGC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	170, 196
LpnPI	CCDG	5 cut(s)	23, 52, 63, 219, 235
MaeIII	GTNAC	1 cut(s)	247
MbiI	CCGCTC	1 cut(s)	239
MboII	GAAGA	1 cut(s)	293
MluCI	AATT	2 cut(s)	104, 170
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	2 cut(s)	44, 205
MspI	CCGG	6 cut(s)	10, 39, 50, 206, 222, 295
MspR9I	CCNGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	153
NciI	CCSGG	1 cut(s)	10
NlaIV	GGNNCC	2 cut(s)	48, 198
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	99, 269
PinAI	ACCGGT	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	241, 293
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	48, 198
PspPI	GGNCC	2 cut(s)	112, 297
SatI	GCNGC	2 cut(s)	240, 292
Sau96I	GGNCC	2 cut(s)	112, 297
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	4 cut(s)	114, 149, 167, 181
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	2 cut(s)	112, 297
Sse9I	AATT	2 cut(s)	104, 170
SsiI	CCGC	3 cut(s)	239, 242, 291
StyD4I	CCNGG	1 cut(s)	8
TaqI	TCGA	2 cut(s)	97, 210
TasI	AATT	2 cut(s)	104, 170
TauI	GCSGC	2 cut(s)	242, 294
TfiI	GAWTC	2 cut(s)	99, 269
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspGWI	ACGGA	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	112, 297
XapI	RAATTY	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.