Rh7CG130400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003471
Physical Location & Seq
Forward (+)
10270637 .. 10273738
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG130400.1

Sequence Viewer

Length: 291 bp
ATGGCCGGTCTCGCCTACGAGACTCGTATGGCGAGGCGTTTTGGTTTTTTTGAGGGTTCATCCGGCCCCGGGAGAGTCCCCGCCTGGAAGATCATCGCTCTCGCGGCCACTGCAGACGACGAGAAGATGAAAGTCCGAGCGGCGCCACCGCCTGCGTCTGCTTCGGAAAGTAAGTTTCCGATCCTCGTCTCAGTTTCCTTACTCCAGAATAAGAATTCCAGTTCGAGGTGCGACGCTCAGATTCCTCCCCCGACCGCGGCCCTGTCTGAAGTGAGTTTGGTAATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.16

Weight (kDa)

9.43

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccBSI CCGCTC 1 cut(s) 140
AccII CGCG 2 cut(s) 104, 257
AciI CCGC 6 cut(s) 81, 104, 140, 149, 255, 257
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 2 cut(s) 3, 105
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 143
AfiI CCNNNNNNNGG 3 cut(s) 69, 225, 256
AjnI CCWGG 1 cut(s) 83
Alw26I GTCTC 3 cut(s) 14, 14, 193
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 4 cut(s) 3, 64, 105, 258
ApoI RAATTY 1 cut(s) 214
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 65, 259
AsuC2I CCSGG 2 cut(s) 69, 70
AvaI CYCGRG 1 cut(s) 68
BanI GGYRCC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 2 cut(s) 69, 70
BcoDI GTCTC 3 cut(s) 14, 14, 193
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 3 cut(s) 105, 141, 258
BlsI GCNGC 3 cut(s) 106, 142, 259
Bme1390I CCNGG 3 cut(s) 69, 70, 85
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 65, 259
BmiI GGNNCC 2 cut(s) 67, 144
BmrFI CCNGG 3 cut(s) 69, 70, 85
BpmI CTGGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 69, 70
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 67, 68, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 225, 256
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 3 cut(s) 67, 68, 255
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 69, 225, 256
BseMII CTCAG 2 cut(s) 204, 251
BseNI ACTGG 1 cut(s) 219
Bsh1236I CGCG 2 cut(s) 104, 257
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 5, 66, 107, 260
BshNI GGYRCC 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 3 cut(s) 6, 63, 69
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 69, 225, 256
BsmAI GTCTC 3 cut(s) 14, 14, 193
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 4 cut(s) 5, 66, 107, 260
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 2 cut(s) 90, 180
BspACI CCGC 6 cut(s) 81, 104, 140, 149, 255, 257
BspANI GGCC 4 cut(s) 5, 66, 107, 260
BspCNI CTCAG 2 cut(s) 203, 250
BspFNI CGCG 2 cut(s) 104, 257
BspLI GGNNCC 2 cut(s) 67, 144
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 67, 68, 255
BssMI GATC 2 cut(s) 90, 180
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 190, 237
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 2 cut(s) 104, 257
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 2 cut(s) 93, 183
BstMAI GTCTC 3 cut(s) 14, 14, 193
BstMBI GATC 2 cut(s) 90, 180
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 11, 104, 110
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 67, 68, 83
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 2 cut(s) 104, 257
BsuRI GGCC 4 cut(s) 5, 66, 107, 260
BtgI CCRYGG 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 2 cut(s) 65, 259
Cfr42I CCGCGG 1 cut(s) 258
Cfr9I CCCGGG 1 cut(s) 68
CseI GACGC 2 cut(s) 144, 242
CviJI RGCY 4 cut(s) 5, 66, 107, 260
CviKI_1 RGCY 4 cut(s) 5, 66, 107, 260
DdeI CTNAG 2 cut(s) 190, 237
DinI GGCGCC 1 cut(s) 144
DpnI GATC 2 cut(s) 92, 182
DpnII GATC 2 cut(s) 90, 180
EaeI YGGCCR 2 cut(s) 3, 105
Eco31I GGTCTC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 83
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 193
FaiI YATR 1 cut(s) 29
FaqI GGGAC 1 cut(s) 62
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 105, 141, 258
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 105, 141, 258
GlaI GCGC 1 cut(s) 144
GluI GCNGC 3 cut(s) 105, 141, 258
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 4 cut(s) 5, 66, 107, 260
HapII CCGG 3 cut(s) 6, 63, 69
HgaI GACGC 2 cut(s) 144, 242
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 3 cut(s) 22, 75, 241
HpaII CCGG 3 cut(s) 6, 63, 69
Hpy188I TCNGA 5 cut(s) 137, 166, 180, 240, 268
Hpy188III TCNNGA 1 cut(s) 205
Hpy99I CGWCG 2 cut(s) 122, 236
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 104, 110
HpyF3I CTNAG 2 cut(s) 190, 237
Hsp92I GRCGYC 1 cut(s) 143
HspAI GCGC 1 cut(s) 143
KasI GGCGCC 1 cut(s) 142
KspI CCGCGG 1 cut(s) 258
Kzo9I GATC 2 cut(s) 90, 180
LpnPI CCDG 9 cut(s) 19, 70, 76, 82, 97, 165, 218, 232, 275
MalI GATC 2 cut(s) 92, 182
MbiI CCGCTC 1 cut(s) 140
MboI GATC 2 cut(s) 90, 180
MboII GAAGA 2 cut(s) 100, 136
MluCI AATT 1 cut(s) 214
Mly113I GGCGCC 1 cut(s) 143
MlyI GAGTC 2 cut(s) 16, 84
MnlI CCTC 5 cut(s) 27, 46, 194, 219, 255
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 3 cut(s) 6, 63, 69
MspR9I CCNGG 3 cut(s) 69, 70, 85
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 2 cut(s) 104, 257
MwoI GCNNNNNNNGC 3 cut(s) 11, 104, 110
NarI GGCGCC 1 cut(s) 143
NciI CCSGG 2 cut(s) 69, 70
NdeII GATC 2 cut(s) 90, 180
NlaIV GGNNCC 2 cut(s) 67, 144
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 3 cut(s) 106, 142, 259
PleI GAGTC 2 cut(s) 16, 83
PluTI GGCGCC 1 cut(s) 146
PpsI GAGTC 2 cut(s) 16, 83
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 67, 144
PspPI GGNCC 2 cut(s) 65, 259
PstI CTGCAG 1 cut(s) 115
SacII CCGCGG 1 cut(s) 258
SatI GCNGC 3 cut(s) 105, 141, 258
Sau3AI GATC 2 cut(s) 90, 180
Sau96I GGNCC 2 cut(s) 65, 259
SchI GAGTC 2 cut(s) 16, 84
ScrFI CCNGG 3 cut(s) 69, 70, 85
SetI ASST 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 111
SfoI GGCGCC 1 cut(s) 144
Sfr303I CCGCGG 1 cut(s) 258
SgrBI CCGCGG 1 cut(s) 258
SmaI CCCGGG 1 cut(s) 70
Sse9I AATT 1 cut(s) 214
SsiI CCGC 6 cut(s) 81, 104, 140, 149, 255, 257
SspDI GGCGCC 1 cut(s) 142
StyD4I CCNGG 3 cut(s) 67, 68, 83
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 214
TauI GCSGC 3 cut(s) 107, 143, 260
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 48, 143
TspMI CCCGGG 1 cut(s) 68
TspRI CASTG 1 cut(s) 115
XapI RAATTY 1 cut(s) 214
XmaI CCCGGG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.