Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006997.1

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

1852 .. 3638

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggccagcaccatctttctcttagggttggttctattgcttcaaagcaggcccatggccggtctctcttacgagactcgtttggccaagcgctttgggtttttcgagggattgccacttccgtctccatctggctccgggagagtccccgctgcaagagagaagtcatcccccaccttactgtgctccggtgaccagtggccggtgcggtctccgacgaccggtgaccggattccggaaaccggtaaccgaaatccagcgaccgatgaccggaatccggaatccggctattattgccccccaggtcaacaactccctctccggtgcggttccggctggagtttggggattgccgaatgtggcgaattaccggacaagcccgattttcggtggcagacttcgacgtcattttcggtaggtttcagctctgaattttcagctcaggactcgaacaaggaatccaaaccggtcgaggacgacgctggaggaggaaagagagcggcggtcatcactgtcaacacgccgagagaatcggagacggaagacgatggcgaccggtcctcgttgccgcaatcggagccggtgggatcgccggttgcttgggcctcgccccataaaggtagcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

209

Amino Acids

22.35

Weight (kDa)

5.16

Isoelectric Point (pI)

70.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AatII	GACGTC	1 cut(s)	407
AccBSI	CCGCTC	1 cut(s)	500
AccIII	TCCGGA	2 cut(s)	235, 277
AciI	CCGC	6 cut(s)	150, 208, 327, 500, 503, 569
AclWI	GGATC	1 cut(s)	595
AcoI	YGGCCR	4 cut(s)	3, 57, 84, 200
AcsI	RAATTY	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	404
AfeI	AGCGCT	1 cut(s)	92
AgeI	ACCGGT	4 cut(s)	221, 242, 466, 555
AgsI	TTSAA	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	301
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	2 cut(s)	426, 440
AluI	AGCT	2 cut(s)	426, 440
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	5 cut(s)	68, 68, 129, 216, 530
AlwI	GGATC	1 cut(s)	595
Aor13HI	TCCGGA	2 cut(s)	235, 277
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	6 cut(s)	3, 50, 57, 84, 200, 603
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
AsiGI	ACCGGT	4 cut(s)	221, 242, 466, 555
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	3 cut(s)	51, 558, 603
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	203, 236
AvaII	GGWCC	1 cut(s)	558
BalI	TGGCCA	2 cut(s)	5, 86
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	3 cut(s)	20, 136, 542
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	5 cut(s)	68, 68, 129, 216, 530
BfoI	RGCGCY	1 cut(s)	94
BisI	GCNGC	3 cut(s)	153, 501, 569
BlsI	GCNGC	3 cut(s)	154, 502, 570
Bme1390I	CCNGG	2 cut(s)	139, 303
Bme18I	GGWCC	1 cut(s)	558
BmgT120I	GGNCC	3 cut(s)	51, 558, 603
BmiI	GGNNCC	3 cut(s)	136, 331, 579
BmrFI	CCNGG	2 cut(s)	139, 303
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	2 cut(s)	358, 504
Bpu10I	CCTNAGC	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	404
BsaI	GGTCTC	2 cut(s)	68, 216
BsaJI	CCNNGG	2 cut(s)	54, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bse118I	RCCGGY	8 cut(s)	59, 202, 221, 242, 466, 555, 580, 592
Bse1I	ACTGG	1 cut(s)	196
BseAI	TCCGGA	2 cut(s)	235, 277
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	54, 301
BseGI	GGATG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	139
Bsh1285I	CGRYCG	4 cut(s)	222, 264, 471, 556
BshFI	GGCC	6 cut(s)	5, 52, 59, 86, 202, 605
BshTI	ACCGGT	4 cut(s)	221, 242, 466, 555
BsiEI	CGRYCG	4 cut(s)	222, 264, 471, 556
BsiHKAI	GWGCWC	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	131
BsmAI	GTCTC	5 cut(s)	68, 68, 129, 216, 530
BsmBI	CGTCTC	2 cut(s)	129, 530
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	6 cut(s)	5, 52, 59, 86, 202, 605
Bso31I	GGTCTC	2 cut(s)	68, 216
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp13I	TCCGGA	2 cut(s)	235, 277
Bsp143I	GATC	1 cut(s)	587
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	6 cut(s)	150, 208, 327, 500, 503, 569
BspANI	GGCC	6 cut(s)	5, 52, 59, 86, 202, 605
BspCNI	CTCAG	1 cut(s)	454
BspEI	TCCGGA	2 cut(s)	235, 277
BspLI	GGNNCC	3 cut(s)	136, 331, 579
BspPI	GGATC	1 cut(s)	595
BspTNI	GGTCTC	2 cut(s)	68, 216
BsrBI	CCGCTC	1 cut(s)	500
BsrFI	RCCGGY	8 cut(s)	59, 202, 221, 242, 466, 555, 580, 592
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	8 cut(s)	59, 202, 221, 242, 466, 555, 580, 592
BssECI	CCNNGG	2 cut(s)	54, 301
BssMI	GATC	1 cut(s)	587
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	183, 514
BstACI	GRCGYC	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	7, 50
BstDEI	CTNAG	2 cut(s)	22, 441
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	3 cut(s)	191, 224, 245
BstF5I	GGATG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	590
BstMAI	GTCTC	5 cut(s)	68, 68, 129, 216, 530
BstMBI	GATC	1 cut(s)	587
BstMCI	CGRYCG	4 cut(s)	222, 264, 471, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	294, 333, 577
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	3 cut(s)	191, 224, 245
BstSCI	CCNGG	2 cut(s)	137, 301
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	549
BsuRI	GGCC	6 cut(s)	5, 52, 59, 86, 202, 605
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	203, 510
Cac8I	GCNNGC	2 cut(s)	7, 50
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	8 cut(s)	59, 202, 221, 242, 466, 555, 580, 592
Cfr13I	GGNCC	3 cut(s)	51, 558, 603
CseI	GACGC	1 cut(s)	488
CspAI	ACCGGT	4 cut(s)	221, 242, 466, 555
CviAII	CATG	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	22, 441
DpnI	GATC	1 cut(s)	589
DpnII	GATC	1 cut(s)	587
DrdI	GACNNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	4 cut(s)	3, 57, 84, 200
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	68, 216
Eco47I	GGWCC	1 cut(s)	558
Eco47III	AGCGCT	1 cut(s)	92
Eco91I	GGTNACC	3 cut(s)	191, 224, 245
EcoO65I	GGTNACC	3 cut(s)	191, 224, 245
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	2 cut(s)	129, 530
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	56, 615
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	54
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	153, 501, 569
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	3 cut(s)	153, 501, 569
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	3 cut(s)	153, 501, 569
GsuI	CTGGAG	2 cut(s)	358, 504
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	6 cut(s)	5, 52, 59, 86, 202, 605
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	2 cut(s)	308, 517
HindII	GTYRAC	2 cut(s)	308, 517
HinfI	GANTC	8 cut(s)	76, 144, 232, 274, 281, 446, 458, 530
HphI	GGTGA	2 cut(s)	203, 236
Hpy166II	GTNNAC	2 cut(s)	308, 517
Hpy188I	TCNGA	4 cut(s)	216, 430, 535, 577
Hpy188III	TCNNGA	3 cut(s)	236, 278, 443
Hpy8I	GTNNAC	2 cut(s)	308, 517
Hpy99I	CGWCG	3 cut(s)	220, 406, 482
HpyCH4III	ACNGT	2 cut(s)	183, 514
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	3 cut(s)	294, 333, 577
HpyF3I	CTNAG	2 cut(s)	22, 441
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	91
Kpn2I	TCCGGA	2 cut(s)	235, 277
Kzo9I	GATC	1 cut(s)	587
LmnI	GCTCC	3 cut(s)	140, 191, 577
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	3 cut(s)	191, 224, 245
MalI	GATC	1 cut(s)	589
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	1 cut(s)	587
MboII	GAAGA	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	188
MlsI	TGGCCA	2 cut(s)	5, 86
MluCI	AATT	2 cut(s)	365, 431
MluNI	TGGCCA	2 cut(s)	5, 86
MlyI	GAGTC	3 cut(s)	70, 153, 440
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	7 cut(s)	100, 327, 466, 479, 482, 571, 616
Mox20I	TGGCCA	2 cut(s)	5, 86
MroI	TCCGGA	2 cut(s)	235, 277
MscI	TGGCCA	2 cut(s)	5, 86
Msp20I	TGGCCA	2 cut(s)	5, 86
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	139, 303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	294, 333, 577
NciI	CCSGG	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	587
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	3 cut(s)	136, 331, 579
NmeAIII	GCCGAG	1 cut(s)	549
NmuCI	GTSAC	2 cut(s)	191, 224
PfeI	GAWTC	5 cut(s)	232, 274, 281, 458, 530
PfoI	TCCNGGA	1 cut(s)	137
PinAI	ACCGGT	4 cut(s)	221, 242, 466, 555
PkrI	GCNGC	3 cut(s)	154, 502, 570
PleI	GAGTC	3 cut(s)	70, 152, 440
PpsI	GAGTC	3 cut(s)	70, 152, 440
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	3 cut(s)	191, 224, 245
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	136, 331, 579
PspPI	GGNCC	3 cut(s)	51, 558, 603
SatI	GCNGC	3 cut(s)	153, 501, 569
Sau3AI	GATC	1 cut(s)	587
Sau96I	GGNCC	3 cut(s)	51, 558, 603
SchI	GAGTC	3 cut(s)	70, 153, 440
ScrFI	CCNGG	2 cut(s)	139, 303
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	7 cut(s)	179, 307, 407, 421, 428, 442, 622
SinI	GGWCC	1 cut(s)	558
Sse9I	AATT	2 cut(s)	365, 431
SsiI	CCGC	6 cut(s)	150, 208, 327, 500, 503, 569
StyD4I	CCNGG	2 cut(s)	137, 301
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	183, 514
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	4 cut(s)	105, 401, 449, 471
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	2 cut(s)	365, 431
TauI	GCSGC	2 cut(s)	503, 571
TfiI	GAWTC	5 cut(s)	232, 274, 281, 458, 530
TscAI	CASTG	2 cut(s)	203, 517
TseFI	GTSAC	2 cut(s)	191, 224
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	2 cut(s)	191, 224
TspGWI	ACGGA	2 cut(s)	111, 554
TspRI	CASTG	2 cut(s)	203, 517
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	1 cut(s)	431
ZraI	GACGTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.