Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Forward (+)

55300673 .. 55304717

Gene Structure 4045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0410700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAAGGTGCCTTCGCCAAAGCCTCTGCGATCACTGATCAGAGGCAGAAGATCGAGCAGTACAAGCACATTCTCTCCACCGTGTTCTCATCCGACGACGTCGTTCCGGCCAAGAAGTTCATCGATCACATGTTGTCGGACGACGTCCCTCTGGTGGTTTCCCGGCAGCTGTTGCAGAGTTTTGCGCAGGACTTGGGGCGGTTGGAGCCGGAATCGCAGAAGGAGATTGCCCATTATACCCTTGCTCAGATTCAGCCTCGCAGCGTTTCATTTGAAGAACAGGTTTTGATAATAAGGGAGAAACTTGCAGAACTGTATGAGTCTGAGCAGCAGTGGTCAAAAGCAGCTCAGATGCTCAGTGGAATTAATCTAGACTCCTCCATGAGAGTGATTGATGACAAGTTCAAGTTAGCAAAGTGTGTTCAAGTTGCCCGCCTGTATCTTGAGGATGATGATGCTGTCAATGCAGAAGCATTTATTAATAAAGCTTCATTCTTGGTTAGCAGCAGTCAGCATGAAGTATTGAATTTGCAGTATAAGGTTTGTTATGCAAGGATTTTAGATTTGAAGAGGAAGTTCTTGGAAGCAGCATTACGTTATTATGACATTTCTCAGATTGAGAAGAGGCAAATAGGAGATGAAGAGATTGATGAGGATGCCTTGGAGCAAGCCTTATCTGCTGCAGTTACATGCACAATTTTGGCCGCTGCAGGACCACAACGTTCCCGTGTTCTTGCCACTTTGTACAAAGATGAGCGATGCTCAAAACTGAAAGTTTATCCAATACTTCAAAAGGTGTATTTGGAGAGAATTTTGAGGAAACCAGAAATTGATGCATTTGCTGAAGAGTTGAAGCCGCATCAGAAAGCACTTCTGCCAGACAATTTTACGGTGTTAGATCGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACCAATATAAGTTTTGATGAGTTGGGAACCTTGCTGGGAATTGAGCCTCCAAAGGCTGAGAAGATTGCTTCAAGAATGATATACGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTGAAGATGATACTGAAGAGCTGCAACAATGGGATCAGCAGATTGTTGGCTTATGTCAAGCGCTCAATGACGTCTTGGATAGCATGGCAAAGAAAGGCTTGGCAATTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

397

Amino Acids

45.13

Weight (kDa)

5.04

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	13 - 207	6.1e-33	PSMD12/CSN4, N-terminal
PCI	PF01399	288 - 362	2.9e-18	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	102, 147, 1152
Acc16I	TGCGCA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	4 cut(s)	199, 433, 705, 857
AclI	AACGTT	1 cut(s)	721
AclWI	GGATC	2 cut(s)	1054, 1119
AcoI	YGGCCR	2 cut(s)	108, 702
AcsI	RAATTY	2 cut(s)	526, 810
AcuI	CTGAAG	2 cut(s)	864, 1113
AcyI	GRCGYC	3 cut(s)	99, 144, 1149
AfaI	GTAC	2 cut(s)	62, 746
AfeI	AGCGCT	1 cut(s)	1140
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	129
AluBI	AGCT	5 cut(s)	169, 347, 488, 1067, 1099
AluI	AGCT	5 cut(s)	169, 347, 488, 1067, 1099
AlwI	GGATC	2 cut(s)	1054, 1119
Aor51HI	AGCGCT	1 cut(s)	1140
AoxI	GGCC	2 cut(s)	108, 702
ApeKI	GCWGC	9 cut(s)	166, 261, 328, 344, 504, 587, 680, 707, 1099
ApoI	RAATTY	2 cut(s)	526, 810
AseI	ATTAAT	2 cut(s)	366, 480
AspLEI	GCGC	2 cut(s)	187, 1141
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	4 cut(s)	576, 608, 1056, 1088
BbvI	GCAGC	9 cut(s)	178, 273, 340, 356, 516, 599, 667, 694, 1086
BclI	TGATCA	2 cut(s)	37, 1054
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	2 cut(s)	681, 708
BfoI	RGCGCY	1 cut(s)	1142
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	3 cut(s)	10, 207, 973
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	6 cut(s)	342, 445, 646, 749, 823, 868
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	123
BsaHI	GRCGYC	3 cut(s)	99, 144, 1149
BsaJI	CCNNGG	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	912
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	3 cut(s)	89, 454, 661
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	7 cut(s)	260, 315, 362, 370, 626, 940, 993
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	9 cut(s)	178, 273, 340, 356, 516, 599, 667, 694, 1086
BseYI	CCCAGC	1 cut(s)	979
BshFI	GGCC	2 cut(s)	110, 704
BshNI	GGYRCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	107, 163, 209
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	110, 704
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	8 cut(s)	30, 37, 51, 124, 898, 1046, 1054, 1111
BspACI	CCGC	4 cut(s)	199, 433, 705, 857
BspANI	GGCC	2 cut(s)	110, 704
BspCNI	CTCAG	7 cut(s)	259, 316, 361, 369, 625, 939, 994
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	10, 207, 973
BspMAI	CTGCAG	2 cut(s)	685, 712
BspPI	GGATC	2 cut(s)	1054, 1119
BspQI	GCTCTTC	1 cut(s)	1089
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	744
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	8 cut(s)	30, 37, 51, 124, 898, 1046, 1054, 1111
BssNI	GRCGYC	3 cut(s)	99, 144, 1149
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	82, 315, 892
Bst6I	CTCTTC	5 cut(s)	563, 617, 636, 840, 1089
BstACI	GRCGYC	3 cut(s)	99, 144, 1149
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	3 cut(s)	433, 669, 934
BstDEI	CTNAG	7 cut(s)	246, 324, 348, 356, 612, 926, 1002
BstF5I	GGATG	3 cut(s)	89, 454, 661
BstH2I	RGCGCY	1 cut(s)	1142
BstHHI	GCGC	2 cut(s)	187, 1141
BstKTI	GATC	8 cut(s)	33, 40, 54, 127, 901, 1049, 1057, 1114
BstMBI	GATC	8 cut(s)	30, 37, 51, 124, 898, 1046, 1054, 1111
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 214, 464, 677
BstNSI	RCATGY	2 cut(s)	133, 693
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	681, 708
BstV1I	GCAGC	9 cut(s)	178, 273, 340, 356, 516, 599, 667, 694, 1086
BstX2I	RGATCY	1 cut(s)	1046
BstYI	RGATCY	1 cut(s)	1046
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	110, 704
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	772
BtsCI	GGATG	3 cut(s)	89, 454, 661
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	4 cut(s)	33, 338, 364, 934
Cac8I	GCNNGC	3 cut(s)	433, 669, 934
CfoI	GCGC	2 cut(s)	187, 1141
Cfr13I	GGNCC	1 cut(s)	713
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	61, 745
CviAII	CATG	5 cut(s)	130, 382, 515, 690, 1162
CviQI	GTAC	2 cut(s)	61, 745
DdeI	CTNAG	7 cut(s)	246, 324, 348, 356, 612, 926, 1002
DpnI	GATC	8 cut(s)	32, 39, 53, 126, 900, 1048, 1056, 1113
DpnII	GATC	8 cut(s)	30, 37, 51, 124, 898, 1046, 1054, 1111
EaeI	YGGCCR	2 cut(s)	108, 702
Eam1104I	CTCTTC	5 cut(s)	563, 617, 636, 840, 1089
EarI	CTCTTC	5 cut(s)	563, 617, 636, 840, 1089
Eco130I	CCWWGG	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	713
Eco47III	AGCGCT	1 cut(s)	1140
Eco57I	CTGAAG	2 cut(s)	864, 1113
EcoT14I	CCWWGG	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	838
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	5 cut(s)	133, 385, 518, 693, 1165
FalI	AAGNNNNNCTT	2 cut(s)	1160, 1192
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	5 cut(s)	129, 381, 514, 689, 1161
FauI	CCCGC	1 cut(s)	440
FbaI	TGATCA	2 cut(s)	37, 1054
FokI	GGATG	3 cut(s)	76, 461, 668
FspBI	CTAG	1 cut(s)	371
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	2 cut(s)	186, 1140
GsaI	CCCAGC	1 cut(s)	983
HaeII	RGCGCY	1 cut(s)	1142
HaeIII	GGCC	2 cut(s)	110, 704
HapII	CCGG	3 cut(s)	107, 163, 209
HhaI	GCGC	2 cut(s)	187, 1141
Hin1I	GRCGYC	3 cut(s)	99, 144, 1149
Hin1II	CATG	5 cut(s)	133, 385, 518, 693, 1165
Hin6I	GCGC	2 cut(s)	185, 1139
HinP1I	GCGC	2 cut(s)	185, 1139
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	4 cut(s)	212, 250, 320, 374
HpaII	CCGG	3 cut(s)	107, 163, 209
Hpy188I	TCNGA	9 cut(s)	42, 94, 139, 249, 325, 351, 615, 864, 1193
Hpy188III	TCNNGA	3 cut(s)	371, 443, 1017
Hpy99I	CGWCG	4 cut(s)	98, 101, 104, 146
HpyAV	CCTTC	2 cut(s)	22, 214
HpyCH4III	ACNGT	3 cut(s)	82, 315, 892
HpyCH4IV	ACGT	5 cut(s)	99, 144, 595, 721, 1149
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 214, 464, 677
HpyF3I	CTNAG	7 cut(s)	246, 324, 348, 356, 612, 926, 1002
HpySE526I	ACGT	5 cut(s)	99, 144, 595, 721, 1149
Hsp92I	GRCGYC	3 cut(s)	99, 144, 1149
Hsp92II	CATG	5 cut(s)	133, 385, 518, 693, 1165
HspAI	GCGC	2 cut(s)	185, 1139
Ksp22I	TGATCA	2 cut(s)	37, 1054
Kzo9I	GATC	8 cut(s)	30, 37, 51, 124, 898, 1046, 1054, 1111
LguI	GCTCTTC	1 cut(s)	1089
LmnI	GCTCC	2 cut(s)	205, 664
Lsp1109I	GCAGC	9 cut(s)	178, 273, 340, 356, 516, 599, 667, 694, 1086
LweI	GCATC	6 cut(s)	342, 445, 646, 749, 823, 868
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	5 cut(s)	99, 144, 595, 721, 1149
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	8 cut(s)	32, 39, 53, 126, 900, 1048, 1056, 1113
MboI	GATC	8 cut(s)	30, 37, 51, 124, 898, 1046, 1054, 1111
MflI	RGATCY	1 cut(s)	1046
MluCI	AATT	8 cut(s)	363, 526, 696, 810, 828, 883, 984, 1182
MlyI	GAGTC	2 cut(s)	329, 368
MmeI	TCCRAC	3 cut(s)	117, 117, 183
Mph1103I	ATGCAT	1 cut(s)	838
MseI	TTAA	2 cut(s)	366, 480
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	2 cut(s)	169, 707
MspI	CCGG	3 cut(s)	107, 163, 209
MspR9I	CCNGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 214, 464, 677
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	8 cut(s)	30, 37, 51, 124, 898, 1046, 1054, 1111
NlaIII	CATG	5 cut(s)	133, 385, 518, 693, 1165
NlaIV	GGNNCC	3 cut(s)	10, 207, 973
NsbI	TGCGCA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	838
NspI	RCATGY	2 cut(s)	133, 693
PciI	ACATGT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	1089
PfeI	GAWTC	2 cut(s)	212, 250
PflFI	GACNNNGTC	2 cut(s)	98, 143
PleI	GAGTC	2 cut(s)	328, 368
PpsI	GAGTC	2 cut(s)	328, 368
PscI	ACATGT	1 cut(s)	129
PshBI	ATTAAT	2 cut(s)	366, 480
Psp1406I	AACGTT	1 cut(s)	721
PspFI	CCCAGC	1 cut(s)	979
PspN4I	GGNNCC	3 cut(s)	10, 207, 973
PspPI	GGNCC	1 cut(s)	713
PstI	CTGCAG	2 cut(s)	685, 712
PsuI	RGATCY	1 cut(s)	1046
PsyI	GACNNNGTC	2 cut(s)	98, 143
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	62, 746
RsaNI	GTAC	2 cut(s)	61, 745
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	1089
SaqAI	TTAA	2 cut(s)	366, 480
Sau3AI	GATC	8 cut(s)	30, 37, 51, 124, 898, 1046, 1054, 1111
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	2 cut(s)	329, 368
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	6 cut(s)	342, 445, 646, 749, 823, 868
SfcI	CTRYAG	2 cut(s)	681, 708
SinI	GGWCC	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	8 cut(s)	363, 526, 696, 810, 828, 883, 984, 1182
SsiI	CCGC	4 cut(s)	199, 433, 705, 857
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	3 cut(s)	82, 315, 892
TaiI	ACGT	5 cut(s)	102, 147, 598, 724, 1152
TaqI	TCGA	2 cut(s)	54, 123
TasI	AATT	8 cut(s)	363, 526, 696, 810, 828, 883, 984, 1182
TatI	WGTACW	2 cut(s)	60, 744
TauI	GCSGC	2 cut(s)	707, 859
TfiI	GAWTC	2 cut(s)	212, 250
Tru1I	TTAA	2 cut(s)	366, 480
Tru9I	TTAA	2 cut(s)	366, 480
TscAI	CASTG	4 cut(s)	40, 338, 364, 934
TseI	GCWGC	9 cut(s)	166, 261, 328, 344, 504, 587, 680, 707, 1099
TspDTI	ATGAA	5 cut(s)	109, 258, 480, 531, 654
TspRI	CASTG	4 cut(s)	40, 338, 364, 934
Tth111I	GACNNNGTC	2 cut(s)	98, 143
VpaK11BI	GGWCC	1 cut(s)	713
VspI	ATTAAT	2 cut(s)	366, 480
XapI	RAATTY	2 cut(s)	526, 810
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	2 cut(s)	133, 693
XspI	CTAG	1 cut(s)	371
ZraI	GACGTC	3 cut(s)	100, 145, 1150
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.