Rh7CG131800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003471
Physical Location & Seq
Forward (+)
10489562 .. 10491060
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG131800.1

Sequence Viewer

Length: 549 bp
ATGCTCACCGACGCCTCCACCATGGATAACTCAGGGAAGATCACGTCCGCTCTGCTCGCCGACGCCGACGCCGCCGCCATCTCCGGGGAGGTCACCTTCACAGCCCTCACCGACGCCGCCATCGTCGACCACTCGAGGATGACCTCTACTCCACGTGTCCCGGTGGCATCAGCTCCGGCTCCTGGGCCTTCCCCCCGCCAGAAGAGTCGGATGACAAAAATAATGTCAGTGGTATTCTTCCTGGTCTTTGTTTTGCTTTGCTGCTACCTTCTGTGCATGTTTGTTGTGGGAGTGATAGACCCAGATTTGTTGACTGACTGCACGGAGGAATTCATACCTGACTTCACAGAACCGTTTCTGCAGAATAACAAGGCACAATCTGGGCGCTATTTACAATGTTGGCTTGGGTCTTTTCATCATGATGTTAGCCGTGCACTTCCTGTGGCCTCTGATAGCCTTTTTGGATCTCGCTCACACATGGGCACCGGATCTGGAGGATATGGAACTCTTGGTGGGAGGAATGGGGGCGATAGTACGTTAATAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.26

Weight (kDa)

5.18

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 482
AccBSI CCGCTC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 126
AciI CCGC 5 cut(s) 48, 72, 75, 117, 196
AclWI GGATC 2 cut(s) 472, 496
AcsI RAATTY 1 cut(s) 329
AcvI CACGTG 1 cut(s) 155
AcyI GRCGYC 4 cut(s) 12, 63, 69, 114
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 2 cut(s) 84, 182
AflIII ACRYGT 1 cut(s) 154
AjiI CACGTC 1 cut(s) 45
AjnI CCWGG 2 cut(s) 181, 240
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 436
Alw44I GTGCAC 1 cut(s) 432
AlwI GGATC 2 cut(s) 472, 496
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 2 cut(s) 185, 444
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 2 cut(s) 85, 161
AsuHPI GGTGA 2 cut(s) 85, 100
AvaI CYCGRG 1 cut(s) 133
BaeGI GKGCMC 2 cut(s) 436, 485
BanI GGYRCC 1 cut(s) 482
BbrPI CACGTG 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 248
BccI CCATC 2 cut(s) 86, 128
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 2 cut(s) 183, 242
BcnI CCSGG 2 cut(s) 85, 161
BfmI CTRYAG 1 cut(s) 359
BfoI RGCGCY 1 cut(s) 388
BisI GCNGC 4 cut(s) 72, 75, 117, 262
BlsI GCNGC 4 cut(s) 73, 76, 118, 263
Bme1390I CCNGG 4 cut(s) 85, 161, 183, 242
BmeT110I CYCGRG 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 180, 484
BmrFI CCNGG 4 cut(s) 85, 161, 183, 242
BmsI GCATC 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 513
BpuMI CCSGG 2 cut(s) 85, 161
BsaAI YACGTR 1 cut(s) 155
BsaHI GRCGYC 4 cut(s) 12, 63, 69, 114
BsaJI CCNNGG 3 cut(s) 21, 84, 182
BsaWI WCCGGW 1 cut(s) 485
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 182
BseBI CCWGG 2 cut(s) 183, 242
BseDI CCNNGG 3 cut(s) 21, 84, 182
BseGI GGATG 2 cut(s) 144, 216
BseLI CCNNNNNNNGG 2 cut(s) 84, 182
BseMII CTCAG 1 cut(s) 45
BseSI GKGCMC 2 cut(s) 436, 485
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 304
BshFI GGCC 2 cut(s) 187, 446
BshNI GGYRCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 436
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 4 cut(s) 84, 161, 176, 486
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 84, 182
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 187, 446
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 436, 485
Bsp143I GATC 3 cut(s) 39, 464, 488
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 5 cut(s) 48, 72, 75, 117, 196
BspANI GGCC 2 cut(s) 187, 446
BspCNI CTCAG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 180, 484
BspMAI CTGCAG 1 cut(s) 363
BspPI GGATC 2 cut(s) 472, 496
BspT107I GGYRCC 1 cut(s) 482
BsrBI CCGCTC 1 cut(s) 50
BssECI CCNNGG 3 cut(s) 21, 84, 182
BssMI GATC 3 cut(s) 39, 464, 488
BssNI GRCGYC 4 cut(s) 12, 63, 69, 114
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 183, 242
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 4 cut(s) 12, 63, 69, 114
BstBAI YACGTR 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 31
BstDSI CCRYGG 1 cut(s) 21
BstEII GGTNACC 1 cut(s) 91
BstF5I GGATG 2 cut(s) 144, 216
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 3 cut(s) 42, 467, 491
BstMBI GATC 3 cut(s) 39, 464, 488
BstMWI GCNNNNNNNGC 2 cut(s) 56, 71
BstNI CCWGG 2 cut(s) 183, 242
BstNSI RCATGY 1 cut(s) 280
BstPI GGTNACC 1 cut(s) 91
BstSCI CCNGG 4 cut(s) 83, 159, 181, 240
BstSFI CTRYAG 1 cut(s) 359
BstSLI GKGCMC 2 cut(s) 436, 485
BstV1I GCAGC 1 cut(s) 248
BstX2I RGATCY 2 cut(s) 464, 488
BstYI RGATCY 2 cut(s) 464, 488
BsuRI GGCC 2 cut(s) 187, 446
BtgI CCRYGG 1 cut(s) 21
BtrI CACGTC 1 cut(s) 45
BtsCI GGATG 2 cut(s) 144, 216
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 4 cut(s) 20, 71, 77, 122
Csp6I GTAC 1 cut(s) 534
CviAII CATG 4 cut(s) 22, 277, 419, 478
CviJI RGCY 8 cut(s) 104, 173, 179, 187, 403, 429, 446, 456
CviKI_1 RGCY 8 cut(s) 104, 173, 179, 187, 403, 429, 446, 456
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 1 cut(s) 31
DpnI GATC 3 cut(s) 41, 466, 490
DpnII GATC 3 cut(s) 39, 464, 488
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 21
Eco72I CACGTG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 133
Eco91I GGTNACC 1 cut(s) 91
EcoO65I GGTNACC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 181, 240
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 4 cut(s) 25, 280, 422, 481
FaiI YATR 6 cut(s) 23, 278, 335, 420, 479, 501
FaqI GGGAC 1 cut(s) 143
FatI CATG 4 cut(s) 21, 276, 418, 477
FauI CCCGC 1 cut(s) 203
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 4 cut(s) 72, 75, 117, 262
FokI GGATG 2 cut(s) 151, 223
Fsp4HI GCNGC 4 cut(s) 72, 75, 117, 262
GlaI GCGC 1 cut(s) 386
GluI GCNGC 4 cut(s) 72, 75, 117, 262
GsuI CTGGAG 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 2 cut(s) 187, 446
HapII CCGG 4 cut(s) 84, 161, 176, 486
HgaI GACGC 4 cut(s) 20, 71, 77, 122
HhaI GCGC 1 cut(s) 387
Hin1I GRCGYC 4 cut(s) 12, 63, 69, 114
Hin1II CATG 4 cut(s) 25, 280, 422, 481
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HincII GTYRAC 2 cut(s) 127, 312
HindII GTYRAC 2 cut(s) 127, 312
HinfI GANTC 1 cut(s) 205
HpaII CCGG 4 cut(s) 84, 161, 176, 486
HphI GGTGA 2 cut(s) 85, 100
Hpy166II GTNNAC 3 cut(s) 127, 312, 434
Hpy188I TCNGA 2 cut(s) 210, 451
Hpy188III TCNNGA 2 cut(s) 419, 492
Hpy8I GTNNAC 3 cut(s) 127, 312, 434
Hpy99I CGWCG 5 cut(s) 14, 65, 71, 116, 128
HpyAV CCTTC 3 cut(s) 106, 198, 278
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4IV ACGT 3 cut(s) 44, 154, 536
HpyCH4V TGCA 4 cut(s) 276, 321, 361, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 71
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 3 cut(s) 44, 154, 536
Hsp92I GRCGYC 4 cut(s) 12, 63, 69, 114
Hsp92II CATG 4 cut(s) 25, 280, 422, 481
HspAI GCGC 1 cut(s) 385
Kzo9I GATC 3 cut(s) 39, 464, 488
LmnI GCTCC 2 cut(s) 178, 184
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 176
MaeII ACGT 3 cut(s) 44, 154, 536
MaeIII GTNAC 1 cut(s) 91
MalI GATC 3 cut(s) 41, 466, 490
MbiI CCGCTC 1 cut(s) 50
MboI GATC 3 cut(s) 39, 464, 488
MboII GAAGA 3 cut(s) 49, 214, 229
MflI RGATCY 2 cut(s) 464, 488
MhlI GDGCHC 2 cut(s) 436, 485
MluCI AATT 1 cut(s) 329
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 9 cut(s) 25, 82, 116, 129, 154, 319, 457, 488, 510
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 1 cut(s) 539
MslI CAYNNNNRTG 1 cut(s) 420
MspI CCGG 4 cut(s) 84, 161, 176, 486
MspR9I CCNGG 4 cut(s) 85, 161, 183, 242
MvaI CCWGG 2 cut(s) 183, 242
MwoI GCNNNNNNNGC 2 cut(s) 56, 71
NciI CCSGG 2 cut(s) 85, 161
NcoI CCATGG 1 cut(s) 21
NdeII GATC 3 cut(s) 39, 464, 488
NlaIII CATG 4 cut(s) 25, 280, 422, 481
NlaIV GGNNCC 2 cut(s) 180, 484
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 133
PagI TCATGA 1 cut(s) 418
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 120
PdmI GAANNNNTTC 1 cut(s) 354
PkrI GCNGC 4 cut(s) 73, 76, 118, 263
PleI GAGTC 1 cut(s) 213
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
PpsI GAGTC 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 155
Psp6I CCWGG 2 cut(s) 181, 240
PspCI CACGTG 1 cut(s) 155
PspEI GGTNACC 1 cut(s) 91
PspGI CCWGG 2 cut(s) 181, 240
PspN4I GGNNCC 2 cut(s) 180, 484
PspPI GGNCC 1 cut(s) 185
PspXI VCTCGAGB 1 cut(s) 133
PstI CTGCAG 1 cut(s) 363
PsuI RGATCY 2 cut(s) 464, 488
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 420
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 539
SatI GCNGC 4 cut(s) 72, 75, 117, 262
Sau3AI GATC 3 cut(s) 39, 464, 488
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 4 cut(s) 85, 161, 183, 242
SduI GDGCHC 2 cut(s) 436, 485
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 359
Sfr274I CTCGAG 1 cut(s) 133
SlaI CTCGAG 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 1 cut(s) 329
SsiI CCGC 5 cut(s) 48, 72, 75, 117, 196
StyD4I CCNGG 4 cut(s) 83, 159, 181, 240
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 354
TaiI ACGT 3 cut(s) 47, 157, 539
TaqI TCGA 2 cut(s) 126, 134
TasI AATT 1 cut(s) 329
TauI GCSGC 3 cut(s) 74, 77, 119
Tru1I TTAA 1 cut(s) 539
Tru9I TTAA 1 cut(s) 539
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 322, 404
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 234
VneI GTGCAC 1 cut(s) 432
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.