Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003471

Physical Location & Seq

Genomic Coordinates Reverse (-)

48485380 .. 48486008

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG324200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGGAGCTGCTCATGCTTCAGAACAAGTTGACCGGCGAAATTCCGGCAAACTACACGAAGTGCACGACGCTGACCCGGTTCAGGGTCAACAACAACTCCCTCTCCGGTGTGGTTCCGGTTGGACTTTGGGGATTGCCGAATGTGGCAATCATTGACATCACTTTGAATCAAATTGAAGCTCAGGACTCGAACACGGAGCCGAAACCGGTCGAGGACGACGCCGGAGGAGGAAAGAGAGCGGCGGTCGTGACTTTCAACACGCCGAGAGAATCGGAGACGGAAGACGACGGCGACCGGTCCTTGTCGCCGCAATCAAAGCCGGTGGGATCACCGGTTGCTTGGGCCTCGCCGCTGAAGGTAGCGAGTAAGAGAGGGATTTGCAGCAGGTGTGGAAAAGGGAACAAATTGAAGGAGAGGGAGTGGTGCTTGGTGTACGACTCAAAGTACTGTAGCAACTGTTTGCTTAAAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

159

Amino Acids

17.34

Weight (kDa)

8.53

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003471)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17740 FvH4_5g17740
malus_domestica	MD06G1232900.v1.1 MD14G1239900.v1.1
prunus_persica	Prupe.5G237500_v2.0.a1 Prupe.5G237500_v2.0.a1
pyrus_communis	pycom06g20790 pycom14g20150
rosa_chinensis	RchiOBHm_Chr5g0016271 RchiOBHm_Chr7g0177881
rosa_laevigata	RLG00000003463 RLG00000005494 RLG00000019305 RLG00000035269
rosa_multiflora	Rmu_sc0000141.1_g000001 Rmu_sc0004510.1_g000005 Rmu_sc0006214.1_g000003 Rmu_sc0006997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129380 Rroxscaffold_3G00275470
rosa_rugosa	Rorug04G0425800 Rorug06G0410700 Rorug06G0410800
rosa_samantha	Rh1CG219000 Rh4CG242300 Rh5AG324200 Rh5CG136200 Rh7AG009900 Rh7AG127600 Rh7BG010000 Rh7BG128600 Rh7BG129500 Rh7CG130400 Rh7CG131800 Rh7DG010000
rosa_wichuraiana	Rw7G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	378
AccBSI	CCGCTC	1 cut(s)	242
AciI	CCGC	4 cut(s)	242, 245, 311, 353
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	2 cut(s)	5, 377
AcyI	GRCGYC	1 cut(s)	222
AdeI	CACNNNGTG	1 cut(s)	63
AfaI	GTAC	2 cut(s)	437, 449
AfiI	CCNNNNNNNGG	2 cut(s)	84, 85
AgeI	ACCGGT	3 cut(s)	208, 297, 334
AgsI	TTSAA	4 cut(s)	169, 179, 259, 412
AluBI	AGCT	3 cut(s)	10, 182, 473
AluI	AGCT	3 cut(s)	10, 182, 473
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	272
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	1 cut(s)	345
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	10, 384
ApoI	RAATTY	1 cut(s)	42
AsiGI	ACCGGT	3 cut(s)	208, 297, 334
AspS9I	GGNCC	2 cut(s)	300, 345
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	396
BceAI	ACGGC	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	11, 243, 311, 353, 385
BlsI	GCNGC	5 cut(s)	12, 244, 312, 354, 386
BmcAI	AGTACT	1 cut(s)	449
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	300, 345
BmiI	GGNNCC	2 cut(s)	117, 201
BmrFI	CCNGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	222
BsaWI	WCCGGW	5 cut(s)	107, 118, 208, 297, 334
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 89, 113, 119, 407, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 85
Bse118I	RCCGGY	5 cut(s)	35, 208, 297, 322, 334
BseLI	CCNNNNNNNGG	2 cut(s)	84, 85
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	396
Bsh1285I	CGRYCG	3 cut(s)	213, 249, 298
BshFI	GGCC	1 cut(s)	347
BshTI	ACCGGT	3 cut(s)	208, 297, 334
BsiEI	CGRYCG	3 cut(s)	213, 249, 298
BsiHKAI	GWGCWC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	84, 85
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	329
BspACI	CCGC	4 cut(s)	242, 245, 311, 353
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	117, 201
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	242
BsrFI	RCCGGY	5 cut(s)	35, 208, 297, 322, 334
BssAI	RCCGGY	5 cut(s)	35, 208, 297, 322, 334
BssMI	GATC	1 cut(s)	329
BssNI	GRCGYC	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	452, 461
BstACI	GRCGYC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	332
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	329
BstMCI	CGRYCG	3 cut(s)	213, 249, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 319
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	347
BveI	ACCTGC	1 cut(s)	378
Cfr10I	RCCGGY	5 cut(s)	35, 208, 297, 322, 334
Cfr13I	GGNCC	2 cut(s)	300, 345
CseI	GACGC	2 cut(s)	79, 230
Csp6I	GTAC	2 cut(s)	436, 448
CspAI	ACCGGT	3 cut(s)	208, 297, 334
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	6 cut(s)	10, 182, 202, 322, 347, 473
CviKI_1	RGCY	6 cut(s)	10, 182, 202, 322, 347, 473
CviQI	GTAC	2 cut(s)	436, 448
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
DraIII	CACNNNGTG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	300
Eco57I	CTGAAG	2 cut(s)	5, 377
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	19
FaiI	YATR	2 cut(s)	17, 476
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	5 cut(s)	11, 243, 311, 353, 385
Fsp4HI	GCNGC	5 cut(s)	11, 243, 311, 353, 385
GluI	GCNGC	5 cut(s)	11, 243, 311, 353, 385
HaeIII	GGCC	1 cut(s)	347
HgaI	GACGC	2 cut(s)	79, 230
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	19
HincII	GTYRAC	2 cut(s)	33, 91
HindII	GTYRAC	2 cut(s)	33, 91
HinfI	GANTC	4 cut(s)	169, 188, 272, 440
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	4 cut(s)	33, 66, 91, 436
Hpy188I	TCNGA	2 cut(s)	24, 277
Hpy188III	TCNNGA	2 cut(s)	185, 250
Hpy8I	GTNNAC	4 cut(s)	33, 66, 91, 436
Hpy99I	CGWCG	3 cut(s)	73, 224, 293
HpyAV	CCTTC	2 cut(s)	352, 406
HpyCH4III	ACNGT	2 cut(s)	452, 461
HpyCH4V	TGCA	2 cut(s)	66, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 319
HpyF3I	CTNAG	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	7, 199
Lsp1109I	GCAGC	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	331
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	1 cut(s)	329
MboII	GAAGA	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	3 cut(s)	42, 174, 407
MlyI	GAGTC	2 cut(s)	182, 434
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	113, 208, 221, 224, 358, 368, 411
MseI	TTAA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	355
MspR9I	CCNGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	16, 319
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	117, 201
NmeAIII	GCCGAG	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	169, 272
PinAI	ACCGGT	3 cut(s)	208, 297, 334
PkrI	GCNGC	5 cut(s)	12, 244, 312, 354, 386
PleI	GAGTC	2 cut(s)	182, 434
PpsI	GAGTC	2 cut(s)	182, 434
PspN4I	GGNNCC	2 cut(s)	117, 201
PspPI	GGNCC	2 cut(s)	300, 345
RsaI	GTAC	2 cut(s)	437, 449
RsaNI	GTAC	2 cut(s)	436, 448
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	5 cut(s)	11, 243, 311, 353, 385
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	2 cut(s)	300, 345
ScaI	AGTACT	1 cut(s)	449
SchI	GAGTC	2 cut(s)	182, 434
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	5 cut(s)	12, 184, 363, 392, 475
SfcI	CTRYAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	300
Sse9I	AATT	3 cut(s)	42, 174, 407
SsiI	CCGC	4 cut(s)	242, 245, 311, 353
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	452, 461
TaqI	TCGA	2 cut(s)	191, 213
TasI	AATT	3 cut(s)	42, 174, 407
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	3 cut(s)	245, 313, 355
TfiI	GAWTC	2 cut(s)	169, 272
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	10, 384
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	212, 296
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.