Rh7AG127600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003471
Physical Location & Seq
Forward (+)
10146046 .. 10146786
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG127600.1

Sequence Viewer

Length: 741 bp
ATGGCGAGCTTGAGCCTCAGTACCAAGCTTGCTCTGGCAACCACCATTCTCTTCCTCGCAACCAGCCTGATGCTCCAAAAGCAGCCCATCGCTGGTCTCGGTCAAGAGACGCGCCTGGCCAGACGCTTCGGTTTCGGCTATGGGTCCCCCCCTTTCCCTGCATTAACCACACCGCCATCACTCTCCAGCTCGGGGATGCTCACCGACGCCTCCACCGTGGATAACTCAGGGAAGATCACGTCCGCTCAGCTCCTCGACGCCATCTCCGAGGAGGTCACCTTCACAGCGCTCGCCGAGGCCGCCATCGTCGACCACTCGAGGATCACCTCTACTCCACGTGTCCCGGTGGCATCAGTTCCGGCTCCTGGGCCTTCCCCCCGCGAGAAGAGTCTGATGACGAAAACAATGTCAGTGGTATTCTTCGTGGTCTTTGTTTTGCTTTTCTTCTACCTTATGTGCATGTTTGTTATGGGACTGATGGTCCCCGATGTATTGACTGCATGGGGGAAGAAAATGACTTCATGGAGGGATTCATACCTGACTTCAGAGAACCGTTTCTGCATAATAGCAAGGCACAATCTGGGCGCTATTTACAATGTTGGCTTGGGTCTTTTCATCATGATGTTAGCCGTGCACTACCTGTGGCCTGTGATAGCCCTTGTGGGTCTCGCCCACACATGGGCACCGGATCTGGAGGATATGGAACTCTTGGTGGCAGGAATGGGGGCGATAGTACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

26.62

Weight (kDa)

7.81

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 309
AccII CGCG 2 cut(s) 112, 381
AciI CCGC 4 cut(s) 173, 243, 300, 379
AclWI GGATC 2 cut(s) 329, 696
AcoI YGGCCR 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 528
AcvI CACGTG 1 cut(s) 338
AcyI GRCGYC 2 cut(s) 207, 258
AfaI GTAC 2 cut(s) 22, 735
AfeI AGCGCT 1 cut(s) 288
AfiI CCNNNNNNNGG 5 cut(s) 92, 192, 365, 678, 679
AflIII ACRYGT 1 cut(s) 337
AhdI GACNNNNNGTC 1 cut(s) 479
AjiI CACGTC 1 cut(s) 240
AjnI CCWGG 2 cut(s) 114, 364
AluBI AGCT 4 cut(s) 9, 28, 189, 250
AluI AGCT 4 cut(s) 9, 28, 189, 250
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 3 cut(s) 101, 101, 671
Alw44I GTGCAC 1 cut(s) 632
AlwI GGATC 2 cut(s) 329, 696
Ama87I CYCGRG 2 cut(s) 190, 316
Aor51HI AGCGCT 1 cut(s) 288
AoxI GGCC 4 cut(s) 117, 297, 368, 644
ApaLI GTGCAC 1 cut(s) 632
ApeKI GCWGC 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
Asp700I GAANNNNTTC 1 cut(s) 554
AspLEI GCGC 3 cut(s) 114, 289, 587
AspS9I GGNCC 3 cut(s) 144, 368, 481
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 3 cut(s) 193, 268, 316
AvaI CYCGRG 2 cut(s) 190, 316
AvaII GGWCC 2 cut(s) 144, 481
BaeGI GKGCMC 2 cut(s) 636, 685
BalI TGGCCA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 682
BbrPI CACGTG 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 94
BccI CCATC 5 cut(s) 95, 184, 269, 311, 472
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 2 cut(s) 116, 366
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 3 cut(s) 101, 101, 671
BfoI RGCGCY 2 cut(s) 290, 588
BisI GCNGC 2 cut(s) 83, 300
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 2 cut(s) 84, 301
Bme1390I CCNGG 3 cut(s) 116, 344, 366
Bme18I GGWCC 2 cut(s) 144, 481
BmeRI GACNNNNNGTC 1 cut(s) 479
BmeT110I CYCGRG 2 cut(s) 190, 316
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 144, 368, 481
BmiI GGNNCC 5 cut(s) 145, 146, 363, 483, 684
BmrFI CCNGG 3 cut(s) 116, 344, 366
BmsI GCATC 3 cut(s) 60, 186, 359
BpmI CTGGAG 2 cut(s) 169, 713
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 338
BsaHI GRCGYC 2 cut(s) 207, 258
BsaI GGTCTC 2 cut(s) 101, 671
BsaJI CCNNGG 4 cut(s) 216, 267, 294, 365
BsaWI WCCGGW 1 cut(s) 685
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 316, 346
Bsc4I CCNNNNNNNGG 5 cut(s) 92, 192, 365, 678, 679
BseBI CCWGG 2 cut(s) 116, 366
BseDI CCNNGG 4 cut(s) 216, 267, 294, 365
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 5 cut(s) 92, 192, 365, 678, 679
BseMII CTCAG 3 cut(s) 31, 240, 260
BseRI GAGGAG 2 cut(s) 242, 284
BseSI GKGCMC 2 cut(s) 636, 685
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 112, 381
BshFI GGCC 4 cut(s) 119, 299, 370, 646
BshNI GGYRCC 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 636
BsiHKCI CYCGRG 2 cut(s) 190, 316
BsiSI CCGG 3 cut(s) 344, 359, 686
BslFI GGGAC 4 cut(s) 130, 326, 467, 486
BslI CCNNNNNNNGG 5 cut(s) 92, 192, 365, 678, 679
BsmAI GTCTC 3 cut(s) 101, 101, 671
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 4 cut(s) 130, 326, 467, 486
BsnI GGCC 4 cut(s) 119, 299, 370, 646
Bso31I GGTCTC 2 cut(s) 101, 671
BsoBI CYCGRG 2 cut(s) 190, 316
Bsp1286I GDGCHC 2 cut(s) 636, 685
Bsp143I GATC 3 cut(s) 234, 321, 688
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 4 cut(s) 173, 243, 300, 379
BspANI GGCC 4 cut(s) 119, 299, 370, 646
BspCNI CTCAG 3 cut(s) 30, 239, 259
BspFNI CGCG 2 cut(s) 112, 381
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 5 cut(s) 145, 146, 363, 483, 684
BspPI GGATC 2 cut(s) 329, 696
BspT107I GGYRCC 1 cut(s) 682
BspTNI GGTCTC 2 cut(s) 101, 671
BsrBI CCGCTC 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 216, 267, 294, 365
BssMI GATC 3 cut(s) 234, 321, 688
BssNI GRCGYC 2 cut(s) 207, 258
Bst2UI CCWGG 2 cut(s) 116, 366
Bst4CI ACNGT 2 cut(s) 217, 554
Bst6I CTCTTC 2 cut(s) 56, 380
BstACI GRCGYC 2 cut(s) 207, 258
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 7, 30, 291
BstDEI CTNAG 3 cut(s) 17, 226, 246
BstDSI CCRYGG 1 cut(s) 216
BstEII GGTNACC 1 cut(s) 274
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 2 cut(s) 112, 381
BstH2I RGCGCY 2 cut(s) 290, 588
BstHHI GCGC 3 cut(s) 114, 289, 587
BstKTI GATC 3 cut(s) 237, 324, 691
BstMAI GTCTC 3 cut(s) 101, 101, 671
BstMBI GATC 3 cut(s) 234, 321, 688
BstMWI GCNNNNNNNGC 2 cut(s) 79, 299
BstNI CCWGG 2 cut(s) 116, 366
BstNSI RCATGY 1 cut(s) 463
BstPI GGTNACC 1 cut(s) 274
BstSCI CCNGG 3 cut(s) 114, 342, 364
BstSLI GKGCMC 2 cut(s) 636, 685
BstUI CGCG 2 cut(s) 112, 381
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 4 cut(s) 119, 299, 370, 646
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 73
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 3 cut(s) 7, 30, 291
CciI TCATGA 1 cut(s) 618
CfoI GCGC 3 cut(s) 114, 289, 587
Cfr13I GGNCC 3 cut(s) 144, 368, 481
CseI GACGC 4 cut(s) 118, 132, 215, 266
Csp6I GTAC 2 cut(s) 21, 734
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 5 cut(s) 460, 501, 522, 619, 678
CviQI GTAC 2 cut(s) 21, 734
DdeI CTNAG 3 cut(s) 17, 226, 246
DpnI GATC 3 cut(s) 236, 323, 690
DpnII GATC 3 cut(s) 234, 321, 688
DriI GACNNNNNGTC 1 cut(s) 479
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 56, 380
Eam1105I GACNNNNNGTC 1 cut(s) 479
EarI CTCTTC 2 cut(s) 56, 380
Eco31I GGTCTC 2 cut(s) 101, 671
Eco47I GGWCC 2 cut(s) 144, 481
Eco47III AGCGCT 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 338
Eco88I CYCGRG 2 cut(s) 190, 316
Eco91I GGTNACC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 114, 364
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 5 cut(s) 463, 504, 525, 622, 681
FaqI GGGAC 4 cut(s) 130, 326, 467, 486
FatI CATG 5 cut(s) 459, 500, 521, 618, 677
FauI CCCGC 1 cut(s) 386
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 83, 300
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 83, 300
GlaI GCGC 3 cut(s) 113, 288, 586
GluI GCNGC 2 cut(s) 83, 300
GsuI CTGGAG 2 cut(s) 169, 713
HaeII RGCGCY 2 cut(s) 290, 588
HaeIII GGCC 4 cut(s) 119, 299, 370, 646
HapII CCGG 3 cut(s) 344, 359, 686
HgaI GACGC 4 cut(s) 118, 132, 215, 266
HhaI GCGC 3 cut(s) 114, 289, 587
Hin1I GRCGYC 2 cut(s) 207, 258
Hin1II CATG 5 cut(s) 463, 504, 525, 622, 681
Hin6I GCGC 3 cut(s) 112, 287, 585
HinP1I GCGC 3 cut(s) 112, 287, 585
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 388, 530
HpaII CCGG 3 cut(s) 344, 359, 686
HphI GGTGA 3 cut(s) 193, 268, 316
Hpy166II GTNNAC 2 cut(s) 310, 634
Hpy188I TCNGA 3 cut(s) 268, 393, 547
Hpy188III TCNNGA 3 cut(s) 104, 619, 692
Hpy8I GTNNAC 2 cut(s) 310, 634
Hpy99I CGWCG 3 cut(s) 209, 260, 311
HpyAV CCTTC 2 cut(s) 289, 381
HpyCH4III ACNGT 2 cut(s) 217, 554
HpyCH4IV ACGT 3 cut(s) 239, 337, 736
HpyCH4V TGCA 5 cut(s) 161, 459, 500, 561, 634
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 299
HpyF3I CTNAG 3 cut(s) 17, 226, 246
HpySE526I ACGT 3 cut(s) 239, 337, 736
Hsp92I GRCGYC 2 cut(s) 207, 258
Hsp92II CATG 5 cut(s) 463, 504, 525, 622, 681
HspAI GCGC 3 cut(s) 112, 287, 585
KflI GGGWCCC 1 cut(s) 144
Kzo9I GATC 3 cut(s) 234, 321, 688
LmnI GCTCC 3 cut(s) 78, 255, 367
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 60, 186, 359
MaeII ACGT 3 cut(s) 239, 337, 736
MaeIII GTNAC 1 cut(s) 274
MalI GATC 3 cut(s) 236, 323, 690
MbiI CCGCTC 1 cut(s) 245
MboI GATC 3 cut(s) 234, 321, 688
MboII GAAGA 6 cut(s) 43, 244, 397, 412, 436, 520
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 2 cut(s) 636, 685
MlsI TGGCCA 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 1 cut(s) 397
Mox20I TGGCCA 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 554
MscI TGGCCA 1 cut(s) 119
MseI TTAA 2 cut(s) 164, 739
MslI CAYNNNNRTG 1 cut(s) 620
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 3 cut(s) 344, 359, 686
MspR9I CCNGG 3 cut(s) 116, 344, 366
MvaI CCWGG 2 cut(s) 116, 366
MvnI CGCG 2 cut(s) 112, 381
MwoI GCNNNNNNNGC 2 cut(s) 79, 299
NciI CCSGG 1 cut(s) 344
NdeII GATC 3 cut(s) 234, 321, 688
NlaIII CATG 5 cut(s) 463, 504, 525, 622, 681
NlaIV GGNNCC 5 cut(s) 145, 146, 363, 483, 684
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 316
PagI TCATGA 1 cut(s) 618
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 264
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 1 cut(s) 530
PkrI GCNGC 2 cut(s) 84, 301
PleI GAGTC 1 cut(s) 396
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
PpsI GAGTC 1 cut(s) 396
Ppu21I YACGTR 1 cut(s) 338
PpuMI RGGWCCY 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 114, 364
PspCI CACGTG 1 cut(s) 338
PspEI GGTNACC 1 cut(s) 274
PspGI CCWGG 2 cut(s) 114, 364
PspN4I GGNNCC 5 cut(s) 145, 146, 363, 483, 684
PspPI GGNCC 3 cut(s) 144, 368, 481
PspPPI RGGWCCY 1 cut(s) 144
PspXI VCTCGAGB 1 cut(s) 316
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 2 cut(s) 22, 735
RsaNI GTAC 2 cut(s) 21, 734
RseI CAYNNNNRTG 1 cut(s) 620
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 2 cut(s) 164, 739
SatI GCNGC 2 cut(s) 83, 300
Sau3AI GATC 3 cut(s) 234, 321, 688
Sau96I GGNCC 3 cut(s) 144, 368, 481
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 3 cut(s) 116, 344, 366
SduI GDGCHC 2 cut(s) 636, 685
SfaNI GCATC 3 cut(s) 60, 186, 359
Sfr274I CTCGAG 1 cut(s) 316
SinI GGWCC 2 cut(s) 144, 481
SlaI CTCGAG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 10, 316
SmoI CTYRAG 2 cut(s) 10, 316
SsiI CCGC 4 cut(s) 173, 243, 300, 379
StyD4I CCNGG 3 cut(s) 114, 342, 364
TaaI ACNGT 2 cut(s) 217, 554
TaiI ACGT 3 cut(s) 242, 340, 739
TaqI TCGA 3 cut(s) 255, 309, 317
TaqII GACCGA 1 cut(s) 89
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 2 cut(s) 164, 739
Tru9I TTAA 2 cut(s) 164, 739
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 510, 522, 604
TspRI CASTG 1 cut(s) 417
VneI GTGCAC 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 144, 481
XceI RCATGY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.