Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004224

Physical Location & Seq

Genomic Coordinates Reverse (-)

11502616 .. 11503363

Gene Structure 748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29708

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCAGGTGATAAAGAGAAGACAATACACTAAACTCGAAGAAAAGTACTTCAAAGAGAATGGTGGCTTATTGTTACTACAACAACTTGCTAGTCATGGAGGCACTGTGGAGACAACAAAAATCTTTTCCACAGAAGAACTTGAGAAGGCAACAAACAATTACCACGAGAGTAGAATCCTTGGAGAAGGAGGCTATGGAACAGTTTACAAAGGAATACTACCAGATGACAAAGTGGTGGCCATAAAGAAGTCAAAAGGTGGTGCCCCAACCCAAAGTGATCAGTTTGTTAACGAGGTGATTGTTCTTTCTCAAATAAACCACAGAAATGTGGTGAAGCTACTAGGTTGTTGTTTAGAGACAGAAGTGCCATTACTAGTATATGAGTTCATCACCCATGGAACTCTTTATGAGCATATTCATAAAAAAAGATCATCATTGTCATTTGAATTACGAATGAAGATAGCAGTTGAAACGGCAGAAGCACTGGCATACTTACACTCCTCAACTTCAAATCCAATCATACATCGAGATGTGAAAGCAGAAAATATACTCTTAGATGATGCTTATACAGCAAAAATATCAGACTTTGGAGCTTCAAGATTGATTCCATCAGGTCAAACTGAAATACAAACTTTAGTGCTAGGACATTCGGTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

219

Amino Acids

24.41

Weight (kDa)

6.76

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 209	5e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	57 - 204	1.4e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004224)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10610
malus_domestica	MD05G1270300.v1.1 MD05G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0329511 RchiOBHm_Chr1g0336171 RchiOBHm_Chr5g0016711 RchiOBHm_Chr5g0016781 RchiOBHm_Chr5g0016821 RchiOBHm_Chr5g0017081 RchiOBHm_Chr5g0017111 RchiOBHm_Chr5g0017281 RchiOBHm_Chr5g0017311 RchiOBHm_Chr5g0054731
rosa_laevigata	RLG00000002400 RLG00000023080 RLG00000029879 RLG00000029880
rosa_multiflora	Rmu_sc0000441.1_g000086 Rmu_sc0001235.1_g000006 Rmu_sc0001423.1_g000044 Rmu_sc0003630.1_g000003 Rmu_sc0003801.1_g000025 Rmu_sc0005319.1_g000021 Rmu_sc0005418.1_g000011 Rmu_sc0008053.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012580 Rroxscaffold_1G00013300 Rroxscaffold_4G00321010 Rroxscaffold_6G00395830 Rroxscaffold_6G00395840
rosa_rugosa	Rorug03G0224700
rosa_wichuraiana	Rw3G024380 Rw3G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	237
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	5 cut(s)	52, 446, 470, 510, 597
AhlI	ACTAGT	1 cut(s)	373
AluBI	AGCT	2 cut(s)	337, 593
AluI	AGCT	2 cut(s)	337, 593
Alw26I	GTCTC	2 cut(s)	104, 350
AoxI	GGCC	1 cut(s)	237
AsuHPI	GGTGA	4 cut(s)	19, 307, 343, 382
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	260
BarI	GAAGNNNNNNTAC	2 cut(s)	354, 386
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	25
BccI	CCATC	1 cut(s)	616
BceAI	ACGGC	1 cut(s)	489
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	104, 350
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	5 cut(s)	90, 341, 374, 641, 658
BmcAI	AGTACT	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	262
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	178, 394
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 482, 512
Bse1I	ACTGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	178, 394
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	490
BseSI	GKGCMC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	104, 350
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	277, 428
Bsp19I	CCATGG	1 cut(s)	394
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	178, 394
BssMI	GATC	2 cut(s)	277, 428
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	2 cut(s)	178, 394
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	106, 202
BstDEI	CTNAG	1 cut(s)	553
BstDSI	CCRYGG	1 cut(s)	394
BstEII	GGTNACC	1 cut(s)	652
BstKTI	GATC	2 cut(s)	280, 431
BstMAI	GTCTC	2 cut(s)	104, 350
BstMBI	GATC	2 cut(s)	277, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstPI	GGTNACC	1 cut(s)	652
BstSLI	GKGCMC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	102, 482
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	95, 395
CviJI	RGCY	5 cut(s)	66, 192, 239, 337, 593
CviKI_1	RGCY	5 cut(s)	66, 192, 239, 337, 593
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	553
DpnI	GATC	2 cut(s)	279, 430
DpnII	GATC	2 cut(s)	277, 428
EaeI	YGGCCR	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	178, 394
Eco91I	GGTNACC	1 cut(s)	652
EcoO65I	GGTNACC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	178, 394
ErhI	CCWWGG	2 cut(s)	178, 394
FaeI	CATG	2 cut(s)	98, 398
FatI	CATG	2 cut(s)	94, 394
FbaI	TGATCA	1 cut(s)	277
FspBI	CTAG	5 cut(s)	90, 341, 374, 641, 658
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	98, 398
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	174, 604
HpaI	GTTAAC	1 cut(s)	289
HphI	GGTGA	4 cut(s)	19, 307, 343, 382
Hpy166II	GTNNAC	2 cut(s)	205, 289
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	2 cut(s)	527, 597
Hpy8I	GTNNAC	2 cut(s)	205, 289
HpyAV	CCTTC	2 cut(s)	139, 179
HpyCH4III	ACNGT	2 cut(s)	106, 202
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	98, 398
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	277, 428
LmnI	GCTCC	1 cut(s)	590
LpnPI	CCDG	3 cut(s)	234, 470, 597
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	5 cut(s)	90, 341, 374, 641, 658
MaeIII	GTNAC	2 cut(s)	72, 652
MalI	GATC	2 cut(s)	279, 430
MboI	GATC	2 cut(s)	277, 428
MboII	GAAGA	4 cut(s)	30, 50, 146, 469
MhlI	GDGCHC	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	2 cut(s)	157, 446
MluNI	TGGCCA	1 cut(s)	239
MnlI	CCTC	4 cut(s)	92, 182, 286, 511
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	2 cut(s)	324, 528
Msp20I	TGGCCA	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	277, 428
NlaIII	CATG	2 cut(s)	98, 398
NlaIV	GGNNCC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	174, 604
PspEI	GGTNACC	1 cut(s)	652
PspN4I	GGNNCC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	324, 528
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	277, 428
ScaI	AGTACT	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	8 cut(s)	9, 259, 297, 339, 346, 595, 616, 659
SfaNI	GCATC	1 cut(s)	550
SmiMI	CAYNNNNRTG	2 cut(s)	324, 528
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	373
Sse9I	AATT	2 cut(s)	157, 446
SspMI	CTAG	5 cut(s)	90, 341, 374, 641, 658
StyI	CCWWGG	2 cut(s)	178, 394
TaaI	ACNGT	2 cut(s)	106, 202
TaqI	TCGA	2 cut(s)	36, 526
TasI	AATT	2 cut(s)	157, 446
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	174, 604
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	109, 489
TspDTI	ATGAA	3 cut(s)	376, 407, 470
TspRI	CASTG	2 cut(s)	109, 489
XspI	CTAG	5 cut(s)	90, 341, 374, 641, 658
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.