Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004224

Physical Location & Seq

Genomic Coordinates Reverse (-)

16989541 .. 16990332

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAACTCTATGATCACATTCATAAAAAGAAAGGAGAACCACTTTCATTTGCACAGCGATTGAAGATAGCAACAGAAACTGCAAAGGCACTTTCACACTCACATAGTTCAGCCATCCATCGAATTATTCATCGAGATGTCAAGGCAACGAATATACTGCTGGATGAGAAACTTACGGCCAAAGTGACGGACTTCGGAGCTTCAAAACTGGTTCCTGACGATAAAACTATAGTTTCAACTTTAGTGCAGGGGACAATGGGATACTTGGACCCTGAATATCTTCGGTCCAACACACTAACAGAAAAGACTGACGTTTATAGCTTTGGAGTTGTCCTCGTGGAGCTACTGACAGGTGAAAATGCAGTTCGTTTCGATAAACCGGAGGAGGAGAGAAACCTGGCCAACGTCTTTGTTTCTACAATAAATAAAGGTCCGCTGCATCCAATTCTTGATGGTGAAATAGTCAAGGATGGAAATTGGGAGATCATCGAAAGAGTTGCCAAGCTCGCAGAAGAATGCTTGAGTGTGAAAGGAGATGAAAGACCTCCCATGGAAGTGGTAGAGAGGGAGCTAGATGAAATACTGAAAACTCTGGAGAAGCAACCAGGGGAAAAGAAGCTTTGTGCCTCCTCTTCCAAAGAGACAGGCCACTCTCTCGAGTCACTTTCAAACACTCGCATTGTGGAGGTTAGTGGTGAAGACGATGGAGGCTCTACCGGGATTATTAGCAGTGCAGAGTATGACGCCAGTATGCAGAATCAAGCCCAAAAGCCCTTCCATGATGGTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK cEGF

Protein Analysis

263

Amino Acids

29.12

Weight (kDa)

5.28

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 190	6.1e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 185	4.6e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004224)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10610
malus_domestica	MD05G1270300.v1.1 MD05G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0329511 RchiOBHm_Chr1g0336171 RchiOBHm_Chr5g0016711 RchiOBHm_Chr5g0016781 RchiOBHm_Chr5g0016821 RchiOBHm_Chr5g0017081 RchiOBHm_Chr5g0017111 RchiOBHm_Chr5g0017281 RchiOBHm_Chr5g0017311 RchiOBHm_Chr5g0054731
rosa_laevigata	RLG00000002400 RLG00000023080 RLG00000029879 RLG00000029880
rosa_multiflora	Rmu_sc0000441.1_g000086 Rmu_sc0001235.1_g000006 Rmu_sc0001423.1_g000044 Rmu_sc0003630.1_g000003 Rmu_sc0003801.1_g000025 Rmu_sc0005319.1_g000021 Rmu_sc0005418.1_g000011 Rmu_sc0008053.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012580 Rroxscaffold_1G00013300 Rroxscaffold_4G00321010 Rroxscaffold_6G00395830 Rroxscaffold_6G00395840
rosa_rugosa	Rorug03G0224700
rosa_wichuraiana	Rw3G024380 Rw3G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	434
AcoI	YGGCCR	2 cut(s)	177, 399
AcyI	GRCGYC	1 cut(s)	744
AgsI	TTSAA	4 cut(s)	64, 204, 237, 669
AjnI	CCWGG	2 cut(s)	396, 604
AluBI	AGCT	6 cut(s)	200, 321, 343, 505, 571, 619
AluI	AGCT	6 cut(s)	200, 321, 343, 505, 571, 619
Alw26I	GTCTC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	3 cut(s)	177, 399, 646
ApeKI	GCWGC	1 cut(s)	436
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	268, 285, 431
AsuC2I	CCSGG	1 cut(s)	718
AsuHPI	GGTGA	3 cut(s)	365, 467, 707
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	3 cut(s)	268, 285, 431
BalI	TGGCCA	1 cut(s)	401
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	6 cut(s)	122, 126, 446, 464, 698, 776
BceAI	ACGGC	1 cut(s)	192
BcgI	CGANNNNNNTGC	4 cut(s)	139, 173, 479, 513
BciT130I	CCWGG	2 cut(s)	398, 606
BciVI	GTATCC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme1390I	CCNGG	3 cut(s)	398, 606, 718
Bme18I	GGWCC	3 cut(s)	268, 285, 431
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	3 cut(s)	268, 285, 431
BmiI	GGNNCC	2 cut(s)	213, 270
BmrFI	CCNGG	3 cut(s)	398, 606, 718
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	705
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BpmI	CTGGAG	1 cut(s)	614
BpuEI	CTTGAG	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	549, 605
BsaWI	WCCGGW	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	213, 747
BseBI	CCWGG	2 cut(s)	398, 606
BseDI	CCNNGG	2 cut(s)	549, 605
BseGI	GGATG	4 cut(s)	114, 169, 439, 475
BseNI	ACTGG	2 cut(s)	213, 747
BseRI	GAGGAG	3 cut(s)	398, 401, 619
BseXI	GCAGC	1 cut(s)	423
BsgI	GTGCAG	2 cut(s)	266, 753
BshFI	GGCC	3 cut(s)	179, 401, 648
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	380, 717
BslFI	GGGAC	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	179, 401, 648
BsoBI	CYCGRG	1 cut(s)	656
Bsp143I	GATC	2 cut(s)	13, 483
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	3 cut(s)	179, 401, 648
BspLI	GGNNCC	2 cut(s)	213, 270
BsrI	ACTGG	2 cut(s)	213, 747
BssECI	CCNNGG	2 cut(s)	549, 605
BssMI	GATC	2 cut(s)	13, 483
BssNI	GRCGYC	1 cut(s)	744
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	398, 606
Bst6I	CTCTTC	1 cut(s)	637
BstACI	GRCGYC	1 cut(s)	744
BstC8I	GCNNGC	1 cut(s)	507
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	4 cut(s)	114, 169, 439, 475
BstKTI	GATC	2 cut(s)	16, 486
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	2 cut(s)	13, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	2 cut(s)	398, 606
BstSCI	CCNGG	3 cut(s)	396, 604, 716
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	705
BstXI	CCANNNNNNTGG	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	179, 401, 648
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	4 cut(s)	114, 169, 439, 475
BtsI	GCAGTG	1 cut(s)	736
BtsIMutI	CAGTG	1 cut(s)	736
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	268, 285, 431
CseI	GACGC	1 cut(s)	752
CviAII	CATG	2 cut(s)	550, 779
DpnI	GATC	2 cut(s)	15, 485
DpnII	GATC	2 cut(s)	13, 483
EaeI	YGGCCR	2 cut(s)	177, 399
Eam1104I	CTCTTC	1 cut(s)	637
EarI	CTCTTC	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	549
Eco47I	GGWCC	3 cut(s)	268, 285, 431
Eco88I	CYCGRG	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	396, 604
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	2 cut(s)	553, 782
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	549, 778
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	4 cut(s)	101, 176, 426, 482
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	1 cut(s)	437
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	3 cut(s)	179, 401, 648
HapII	CCGG	2 cut(s)	380, 717
HgaI	GACGC	1 cut(s)	752
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	2 cut(s)	553, 782
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	2 cut(s)	659, 757
HpaII	CCGG	2 cut(s)	380, 717
HphI	GGTGA	3 cut(s)	365, 467, 707
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	5 cut(s)	134, 215, 449, 593, 656
HpyAV	CCTTC	1 cut(s)	784
HpyCH4IV	ACGT	2 cut(s)	312, 405
HpyCH4V	TGCA	7 cut(s)	53, 83, 247, 362, 439, 734, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpySE526I	ACGT	2 cut(s)	312, 405
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	2 cut(s)	553, 782
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	13, 483
LmnI	GCTCC	3 cut(s)	197, 340, 568
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	2 cut(s)	312, 405
MaeIII	GTNAC	2 cut(s)	184, 660
MalI	GATC	2 cut(s)	15, 485
MboI	GATC	2 cut(s)	13, 483
MboII	GAAGA	5 cut(s)	76, 272, 524, 624, 710
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	123, 444, 475
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	668
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	9 cut(s)	344, 376, 379, 555, 558, 637, 640, 679, 701
Mox20I	TGGCCA	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	401
MslI	CAYNNNNRTG	2 cut(s)	135, 554
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	2 cut(s)	380, 717
MspR9I	CCNGG	3 cut(s)	398, 606, 718
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	2 cut(s)	398, 606
MwoI	GCNNNNNNNGC	1 cut(s)	506
NciI	CCSGG	1 cut(s)	718
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	2 cut(s)	13, 483
NlaIII	CATG	2 cut(s)	553, 782
NlaIV	GGNNCC	2 cut(s)	213, 270
NmuCI	GTSAC	2 cut(s)	184, 660
PaeR7I	CTCGAG	1 cut(s)	656
PctI	GAATGC	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	757
PkrI	GCNGC	1 cut(s)	438
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	396, 604
PspGI	CCWGG	2 cut(s)	396, 604
PspN4I	GGNNCC	2 cut(s)	213, 270
PspPI	GGNCC	3 cut(s)	268, 285, 431
PstNI	CAGNNNCTG	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	135, 554
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	13, 483
Sau96I	GGNCC	3 cut(s)	268, 285, 431
SchI	GAGTC	1 cut(s)	668
ScrFI	CCNGG	3 cut(s)	398, 606, 718
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	656
SinI	GGWCC	3 cut(s)	268, 285, 431
SlaI	CTCGAG	1 cut(s)	656
SmiMI	CAYNNNNRTG	2 cut(s)	135, 554
SmlI	CTYRAG	2 cut(s)	520, 656
SmoI	CTYRAG	2 cut(s)	520, 656
Sse9I	AATT	3 cut(s)	123, 444, 475
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	396, 604, 716
StyI	CCWWGG	1 cut(s)	549
TaiI	ACGT	2 cut(s)	315, 408
TaqI	TCGA	5 cut(s)	121, 133, 372, 489, 657
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	123, 444, 475
TfiI	GAWTC	1 cut(s)	757
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	2 cut(s)	184, 660
TseI	GCWGC	1 cut(s)	436
Tsp45I	GTSAC	2 cut(s)	184, 660
TspDTI	ATGAA	5 cut(s)	11, 36, 119, 552, 591
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	736
VpaK11BI	GGWCC	3 cut(s)	268, 285, 431
XhoI	CTCGAG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.