Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004224

Physical Location & Seq

Genomic Coordinates Forward (+)

31300180 .. 31300743

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G024380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAAAAAAAGTACTATGGAGCAAACGGGGGGCCAAAATTACAACTGCAATTGAAGCAATTGGCTAGTAAAAAAGAATCTCTTACAGCCCTAATCTTTTCTGCAGAAGAACTTAAGAAGGCAACAAAGGATTACGATGAAAATGAAAAAATTGGTGAAGGAGGTTATGGAACAGTCTACAAAGGCGTACTCGAAGATAAAAGAGTGGTTGCAATAAAGATGTCCAAAATGACTCCCCAGGTCGGAAGTGATCAATTTATTAATGAGGTCATTGTTCTTTCTCAAATCCGTCATAGAAATGTGGTGAGGCTGCTAGGCTGTTGTTTGGAGACAAAAACTCCTTTGCTAGTTTACGAGTATGTTGGTAATGGAACTCTGTATGATCACATTCATAAAAAGAATAGAGAACCACTTTCGTTTGCACAACGATTGAAGATAGCAACAGAAACTGCGGGGGCACTTTCACACTTACATCGTTCCGCCATCCATCGAATTATTCATCGAGATGTCAAGGCAACGAATATAGTCATATACTGTTGGATGAGAAACTTACGGCCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK cEGF

Protein Analysis

187

Amino Acids

21.27

Weight (kDa)

9.73

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	45 - 177	1.2e-26	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	48 - 177	3.1e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004224)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10610
malus_domestica	MD05G1270300.v1.1 MD05G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0329511 RchiOBHm_Chr1g0336171 RchiOBHm_Chr5g0016711 RchiOBHm_Chr5g0016781 RchiOBHm_Chr5g0016821 RchiOBHm_Chr5g0017081 RchiOBHm_Chr5g0017111 RchiOBHm_Chr5g0017281 RchiOBHm_Chr5g0017311 RchiOBHm_Chr5g0054731
rosa_laevigata	RLG00000002400 RLG00000023080 RLG00000029879 RLG00000029880
rosa_multiflora	Rmu_sc0000441.1_g000086 Rmu_sc0001235.1_g000006 Rmu_sc0001423.1_g000044 Rmu_sc0003630.1_g000003 Rmu_sc0003801.1_g000025 Rmu_sc0005319.1_g000021 Rmu_sc0005418.1_g000011 Rmu_sc0008053.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012580 Rroxscaffold_1G00013300 Rroxscaffold_4G00321010 Rroxscaffold_6G00395830 Rroxscaffold_6G00395840
rosa_rugosa	Rorug03G0224700
rosa_wichuraiana	Rw3G024380 Rw3G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	2 cut(s)	452, 480
AcoI	YGGCCR	1 cut(s)	554
AfaI	GTAC	2 cut(s)	14, 189
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	55, 433
AjnI	CCWGG	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	32, 554
ApeKI	GCWGC	1 cut(s)	310
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	167, 316
BaeGI	GKGCMC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	2 cut(s)	491, 495
BciT130I	CCWGG	1 cut(s)	239
BclI	TGATCA	2 cut(s)	250, 382
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	3 cut(s)	66, 314, 347
BfmI	CTRYAG	1 cut(s)	102
BfrI	CTTAAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	483, 546
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	297
BshFI	GGCC	2 cut(s)	34, 556
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	34, 556
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	250, 382
BspACI	CCGC	2 cut(s)	452, 480
BspANI	GGCC	2 cut(s)	34, 556
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	106
BspTI	CTTAAG	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	250, 382
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	175, 536
BstAFI	CTTAAG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	483, 546
BstKTI	GATC	2 cut(s)	253, 385
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	250, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	34, 556
BtsCI	GGATG	2 cut(s)	483, 546
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	13, 188
CviJI	RGCY	6 cut(s)	34, 65, 89, 310, 318, 556
CviKI_1	RGCY	6 cut(s)	34, 65, 89, 310, 318, 556
CviQI	GTAC	2 cut(s)	13, 188
DpnI	GATC	2 cut(s)	252, 384
DpnII	GATC	2 cut(s)	250, 382
EaeI	YGGCCR	1 cut(s)	554
EciI	GGCGGA	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	237
FaiI	YATR	9 cut(s)	18, 168, 294, 360, 381, 393, 524, 530, 532
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	2 cut(s)	250, 382
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	470, 553
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	3 cut(s)	66, 314, 347
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	34, 556
HinfI	GANTC	2 cut(s)	77, 232
HphI	GGTGA	2 cut(s)	167, 316
Hpy166II	GTNNAC	2 cut(s)	178, 352
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	2 cut(s)	178, 352
HpyAV	CCTTC	2 cut(s)	112, 152
HpyCH4III	ACNGT	2 cut(s)	175, 536
HpyCH4V	TGCA	4 cut(s)	49, 104, 212, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	250, 382
Kzo9I	GATC	2 cut(s)	250, 382
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	2 cut(s)	224, 251
Lsp1109I	GCAGC	1 cut(s)	297
MaeI	CTAG	3 cut(s)	66, 314, 347
MalI	GATC	2 cut(s)	252, 384
MboI	GATC	2 cut(s)	250, 382
MboII	GAAGA	3 cut(s)	119, 206, 445
MfeI	CAATTG	2 cut(s)	50, 59
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	6 cut(s)	38, 50, 59, 150, 254, 492
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	2 cut(s)	223, 518
MnlI	CCTC	3 cut(s)	155, 259, 300
MseI	TTAA	2 cut(s)	114, 261
MslI	CAYNNNNRTG	2 cut(s)	297, 504
MspCI	CTTAAG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	2 cut(s)	50, 59
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	250, 382
NlaIV	GGNNCC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	14, 189
RsaNI	GTAC	2 cut(s)	13, 188
RseI	CAYNNNNRTG	2 cut(s)	297, 504
SaqAI	TTAA	2 cut(s)	114, 261
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	250, 382
Sau96I	GGNCC	1 cut(s)	32
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	3 cut(s)	166, 243, 270
SfcI	CTRYAG	1 cut(s)	102
SmiMI	CAYNNNNRTG	2 cut(s)	297, 504
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	6 cut(s)	38, 50, 59, 150, 254, 492
SsiI	CCGC	2 cut(s)	452, 480
SspMI	CTAG	3 cut(s)	66, 314, 347
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	175, 536
TaqI	TCGA	3 cut(s)	192, 490, 502
TasI	AATT	6 cut(s)	38, 50, 59, 150, 254, 492
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	114, 261
Tru9I	TTAA	2 cut(s)	114, 261
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	17, 153, 159, 380, 488
TspGWI	ACGGA	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	3 cut(s)	66, 314, 347
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.