Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005418.1

Orthogroup ID

OG0004224

Physical Location & Seq

Genomic Coordinates Forward (+)

19569 .. 20729

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005418.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgaaaaaaaagtactttgaagcaaacggagggccgaaattacaactacaattaaagcaattggctagtcaaaaagaatctcttgcaacccaaatctttactgctgaacaacttaagaaggcaacaaaggattacgatgaaaatgaaaaaattggtgaaggaggttatggaatagtctacaaaggcgtactcgatgataaaagagaggttgcaataaagatgtccaaaatgactgcccaggtcaaaagtgatcaatttattaatgaggtcatcgttctttctcaaatcagtcatagaaatgtggtgaggctgctaggctgttgtttggagacagaaacgcctatgctagtttacgagtttgttggtaatggaactctttatgagcacattcatcaaaagaaaggacaaccactttcatttgcacaacgattgaagatagcagcagaaactgcgacggcactttcatacttacatcactctaccaccatgcaaattgttcatcgagatgtcaaggcaacgaatatactgttggatgagaaacttactgccaaagtgtcggacttcggagcttcaaaactggttcctgacgacaaaactcaactttcaactttagtgcaggggacaatgggatacttggaccctgaatatcttcaatccaacacactaacagaaaagagtgacgtttatagctttggagttgtcctcgtggagctattgacaagcgagaatgcagttcgtttcgataaacccgaggcagagagaaacccggtcaacgtctttgtttctataaaaggtctgcgcgcgctgggtccaattcttgatgatgaaatagtcaaggatggaaattgggagatcatcgaaaaagttgccaatcttgccaaaatatgcttaagtgtgaaaggagacgaaaggcctgccatgaaacaagtagagagggagctagatgaaatactgagaactttggcaaagcaacccgggggaaagaagctttacgccttctcttccaaagagacggacacctctcttgagtcacattcaaacgattacaatgtggagattagtaatgaaggcgatggtggttctactggcattattagcagtgcagagtatgcctccagcatgcaaaatcaagcccaaaagccgtccggttatggtcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK cEGF

Protein Analysis

386

Amino Acids

42.79

Weight (kDa)

5.92

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004224)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10610
malus_domestica	MD05G1270300.v1.1 MD05G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0329511 RchiOBHm_Chr1g0336171 RchiOBHm_Chr5g0016711 RchiOBHm_Chr5g0016781 RchiOBHm_Chr5g0016821 RchiOBHm_Chr5g0017081 RchiOBHm_Chr5g0017111 RchiOBHm_Chr5g0017281 RchiOBHm_Chr5g0017311 RchiOBHm_Chr5g0054731
rosa_laevigata	RLG00000002400 RLG00000023080 RLG00000029879 RLG00000029880
rosa_multiflora	Rmu_sc0000441.1_g000086 Rmu_sc0001235.1_g000006 Rmu_sc0001423.1_g000044 Rmu_sc0003630.1_g000003 Rmu_sc0003801.1_g000025 Rmu_sc0005319.1_g000021 Rmu_sc0005418.1_g000011 Rmu_sc0008053.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012580 Rroxscaffold_1G00013300 Rroxscaffold_4G00321010 Rroxscaffold_6G00395830 Rroxscaffold_6G00395840
rosa_rugosa	Rorug03G0224700
rosa_wichuraiana	Rw3G024380 Rw3G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	801, 803
AfaI	GTAC	2 cut(s)	14, 189
AflII	CTTAAG	2 cut(s)	113, 889
AgsI	TTSAA	6 cut(s)	20, 433, 573, 606, 653, 1038
AjnI	CCWGG	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	5 cut(s)	569, 690, 712, 940, 988
AluI	AGCT	5 cut(s)	569, 690, 712, 940, 988
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	3 cut(s)	323, 897, 1004
AlwNI	CAGNNNCTG	1 cut(s)	449
Ama87I	CYCGRG	2 cut(s)	749, 974
AoxI	GGCC	2 cut(s)	32, 911
ApeKI	GCWGC	2 cut(s)	310, 440
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	3 cut(s)	801, 803, 805
AspS9I	GGNCC	3 cut(s)	32, 637, 809
AsuC2I	CCSGG	3 cut(s)	767, 975, 976
AsuHPI	GGTGA	2 cut(s)	167, 316
AvaI	CYCGRG	2 cut(s)	749, 974
AvaII	GGWCC	2 cut(s)	637, 809
BauI	CACGAG	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	297, 452
BccI	CCATC	2 cut(s)	833, 1067
BceAI	ACGGC	2 cut(s)	471, 1126
BcgI	CGANNNNNNTGC	4 cut(s)	848, 882, 896, 930
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	623
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	3 cut(s)	767, 975, 976
BcoDI	GTCTC	3 cut(s)	323, 897, 1004
BfaI	CTAG	4 cut(s)	66, 314, 347, 941
BfrI	CTTAAG	2 cut(s)	113, 889
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	2 cut(s)	311, 441
BlsI	GCNGC	2 cut(s)	312, 442
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	4 cut(s)	239, 767, 975, 976
Bme18I	GGWCC	2 cut(s)	637, 809
BmeT110I	CYCGRG	2 cut(s)	749, 974
BmgT120I	GGNCC	3 cut(s)	32, 637, 809
BmiI	GGNNCC	3 cut(s)	582, 639, 810
BmrFI	CCNGG	4 cut(s)	239, 767, 975, 976
BplI	GAGNNNNNCTC	4 cut(s)	687, 719, 1097, 1129
BpmI	CTGGAG	1 cut(s)	1099
BpuEI	CTTGAG	1 cut(s)	1046
BpuMI	CCSGG	3 cut(s)	767, 975, 976
BsaJI	CCNNGG	4 cut(s)	237, 750, 974, 975
BsaWI	WCCGGW	1 cut(s)	1145
Bse1I	ACTGG	2 cut(s)	582, 1090
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	4 cut(s)	237, 750, 974, 975
BseGI	GGATG	2 cut(s)	538, 844
BseMII	CTCAG	1 cut(s)	944
BseNI	ACTGG	2 cut(s)	582, 1090
BsePI	GCGCGC	2 cut(s)	799, 801
BseXI	GCAGC	2 cut(s)	297, 452
BseYI	CCCAGC	1 cut(s)	805
BsgI	GTGCAG	2 cut(s)	635, 1122
Bsh1236I	CGCG	2 cut(s)	801, 803
BshFI	GGCC	2 cut(s)	34, 913
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	2 cut(s)	749, 974
BsiSI	CCGG	3 cut(s)	767, 975, 1146
BslFI	GGGAC	1 cut(s)	634
BsmAI	GTCTC	3 cut(s)	323, 897, 1004
BsmBI	CGTCTC	2 cut(s)	897, 1004
BsmFI	GGGAC	1 cut(s)	634
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	2 cut(s)	34, 913
BsoBI	CYCGRG	2 cut(s)	749, 974
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	250, 852
BspANI	GGCC	2 cut(s)	34, 913
BspCNI	CTCAG	1 cut(s)	945
BspFNI	CGCG	2 cut(s)	801, 803
BspLI	GGNNCC	3 cut(s)	582, 639, 810
BspTI	CTTAAG	2 cut(s)	113, 889
BsrI	ACTGG	2 cut(s)	582, 1090
BssECI	CCNNGG	4 cut(s)	237, 750, 974, 975
BssHII	GCGCGC	2 cut(s)	799, 801
BssMI	GATC	2 cut(s)	250, 852
BssSI	CACGAG	1 cut(s)	704
Bst2BI	CACGAG	1 cut(s)	704
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	1 cut(s)	1006
BstAFI	CTTAAG	2 cut(s)	113, 889
BstAPI	GCANNNNNTGC	2 cut(s)	449, 1109
BstC8I	GCNNGC	4 cut(s)	801, 803, 915, 1121
BstDEI	CTNAG	1 cut(s)	953
BstF5I	GGATG	2 cut(s)	538, 844
BstFNI	CGCG	2 cut(s)	801, 803
BstHHI	GCGC	3 cut(s)	801, 803, 805
BstKTI	GATC	2 cut(s)	253, 855
BstMAI	GTCTC	3 cut(s)	323, 897, 1004
BstMBI	GATC	2 cut(s)	250, 852
BstMWI	GCNNNNNNNGC	4 cut(s)	449, 875, 1095, 1109
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	1123
BstSCI	CCNGG	4 cut(s)	237, 765, 973, 974
BstUI	CGCG	2 cut(s)	801, 803
BstV1I	GCAGC	2 cut(s)	297, 452
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	34, 913
BtgZI	GCGATG	1 cut(s)	1086
BtsCI	GGATG	2 cut(s)	538, 844
BtsI	GCAGTG	1 cut(s)	1105
BtsIMutI	CAGTG	1 cut(s)	1105
Cac8I	GCNNGC	4 cut(s)	801, 803, 915, 1121
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	3 cut(s)	801, 803, 805
Cfr13I	GGNCC	3 cut(s)	32, 637, 809
Cfr9I	CCCGGG	1 cut(s)	974
Csp6I	GTAC	2 cut(s)	13, 188
CviAII	CATG	3 cut(s)	487, 919, 1120
CviQI	GTAC	2 cut(s)	13, 188
DdeI	CTNAG	1 cut(s)	953
DpnI	GATC	2 cut(s)	252, 854
DpnII	GATC	2 cut(s)	250, 852
Eam1104I	CTCTTC	1 cut(s)	1006
EarI	CTCTTC	1 cut(s)	1006
Eco147I	AGGCCT	1 cut(s)	913
Eco47I	GGWCC	2 cut(s)	637, 809
Eco88I	CYCGRG	2 cut(s)	749, 974
EcoRII	CCWGG	1 cut(s)	237
Esp3I	CGTCTC	2 cut(s)	897, 1004
FaeI	CATG	3 cut(s)	490, 922, 1123
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	3 cut(s)	486, 918, 1119
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	311, 441
FokI	GGATG	2 cut(s)	545, 851
Fsp4HI	GCNGC	2 cut(s)	311, 441
FspBI	CTAG	4 cut(s)	66, 314, 347, 941
GlaI	GCGC	3 cut(s)	800, 802, 804
GluI	GCNGC	2 cut(s)	311, 441
GsaI	CCCAGC	1 cut(s)	809
GsuI	CTGGAG	1 cut(s)	1099
HaeIII	GGCC	2 cut(s)	34, 913
HapII	CCGG	3 cut(s)	767, 975, 1146
HhaI	GCGC	3 cut(s)	801, 803, 805
Hin1II	CATG	3 cut(s)	490, 922, 1123
Hin6I	GCGC	3 cut(s)	799, 801, 803
HinP1I	GCGC	3 cut(s)	799, 801, 803
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	2 cut(s)	77, 1028
HpaII	CCGG	3 cut(s)	767, 975, 1146
HphI	GGTGA	2 cut(s)	167, 316
Hpy166II	GTNNAC	3 cut(s)	178, 352, 772
Hpy188I	TCNGA	2 cut(s)	559, 566
Hpy188III	TCNNGA	4 cut(s)	503, 584, 818, 1025
Hpy8I	GTNNAC	3 cut(s)	178, 352, 772
Hpy99I	CGWCG	1 cut(s)	457
HpyAV	CCTTC	4 cut(s)	112, 152, 1006, 1061
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4IV	ACGT	2 cut(s)	681, 774
HpyCH4V	TGCA	8 cut(s)	86, 212, 422, 490, 616, 731, 1103, 1123
HpyF10VI	GCNNNNNNNGC	4 cut(s)	449, 875, 1095, 1109
HpyF3I	CTNAG	1 cut(s)	953
HpySE526I	ACGT	2 cut(s)	681, 774
Hsp92II	CATG	3 cut(s)	490, 922, 1123
HspAI	GCGC	3 cut(s)	799, 801, 803
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	250, 852
LmnI	GCTCC	3 cut(s)	566, 709, 937
Lsp1109I	GCAGC	2 cut(s)	297, 452
MaeI	CTAG	4 cut(s)	66, 314, 347, 941
MaeII	ACGT	2 cut(s)	681, 774
MaeIII	GTNAC	2 cut(s)	677, 1029
MalI	GATC	2 cut(s)	252, 854
MboI	GATC	2 cut(s)	250, 852
MboII	GAAGA	3 cut(s)	445, 641, 993
MfeI	CAATTG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	8 cut(s)	38, 50, 59, 150, 254, 492, 813, 844
MlyI	GAGTC	1 cut(s)	1037
MmeI	TCCRAC	3 cut(s)	510, 537, 681
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	4 cut(s)	53, 114, 261, 890
MslI	CAYNNNNRTG	2 cut(s)	297, 504
MspCI	CTTAAG	2 cut(s)	113, 889
MspI	CCGG	3 cut(s)	767, 975, 1146
MspR9I	CCNGG	4 cut(s)	239, 767, 975, 976
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	2 cut(s)	801, 803
MwoI	GCNNNNNNNGC	4 cut(s)	449, 875, 1095, 1109
NciI	CCSGG	3 cut(s)	767, 975, 976
NdeII	GATC	2 cut(s)	250, 852
NlaIII	CATG	3 cut(s)	490, 922, 1123
NlaIV	GGNNCC	3 cut(s)	582, 639, 810
NmuCI	GTSAC	2 cut(s)	677, 1029
NspI	RCATGY	1 cut(s)	1123
PaeI	GCATGC	1 cut(s)	1123
PauI	GCGCGC	2 cut(s)	799, 801
PceI	AGGCCT	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PctI	GAATGC	1 cut(s)	733
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	312, 442
PleI	GAGTC	1 cut(s)	1036
PpsI	GAGTC	1 cut(s)	1036
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	3 cut(s)	582, 639, 810
PspPI	GGNCC	3 cut(s)	32, 637, 809
PstNI	CAGNNNCTG	1 cut(s)	449
PteI	GCGCGC	2 cut(s)	799, 801
RsaI	GTAC	2 cut(s)	14, 189
RsaNI	GTAC	2 cut(s)	13, 188
RseI	CAYNNNNRTG	2 cut(s)	297, 504
SaqAI	TTAA	4 cut(s)	53, 114, 261, 890
SatI	GCNGC	2 cut(s)	311, 441
Sau3AI	GATC	2 cut(s)	250, 852
Sau96I	GGNCC	3 cut(s)	32, 637, 809
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	1 cut(s)	1037
ScrFI	CCNGG	4 cut(s)	239, 767, 975, 976
SduI	GDGCHC	1 cut(s)	387
SinI	GGWCC	2 cut(s)	637, 809
SmaI	CCCGGG	1 cut(s)	976
SmiMI	CAYNNNNRTG	2 cut(s)	297, 504
SmlI	CTYRAG	3 cut(s)	113, 889, 1025
SmoI	CTYRAG	3 cut(s)	113, 889, 1025
SphI	GCATGC	1 cut(s)	1123
Sse9I	AATT	8 cut(s)	38, 50, 59, 150, 254, 492, 813, 844
SseBI	AGGCCT	1 cut(s)	913
SspMI	CTAG	4 cut(s)	66, 314, 347, 941
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	4 cut(s)	237, 765, 973, 974
TaaI	ACNGT	1 cut(s)	528
TaiI	ACGT	2 cut(s)	684, 777
TaqI	TCGA	5 cut(s)	192, 502, 741, 858, 1156
TasI	AATT	8 cut(s)	38, 50, 59, 150, 254, 492, 813, 844
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	4 cut(s)	53, 114, 261, 890
Tru9I	TTAA	4 cut(s)	53, 114, 261, 890
TscAI	CASTG	1 cut(s)	1105
TseFI	GTSAC	2 cut(s)	677, 1029
TseI	GCWGC	2 cut(s)	310, 440
Tsp45I	GTSAC	2 cut(s)	677, 1029
TspGWI	ACGGA	2 cut(s)	42, 1028
TspMI	CCCGGG	1 cut(s)	974
TspRI	CASTG	1 cut(s)	1105
Vha464I	CTTAAG	2 cut(s)	113, 889
VpaK11BI	GGWCC	2 cut(s)	637, 809
VspI	ATTAAT	1 cut(s)	261
XceI	RCATGY	1 cut(s)	1123
XmaI	CCCGGG	1 cut(s)	974
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	4 cut(s)	66, 314, 347, 941
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.