Rmu_sc0003630.1_g000003
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003630.1
OG0004224
Physical Location & Seq
Reverse (-)
10397 .. 10969
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003630.1_g000003.1.cds

Sequence Viewer

Length: 573 bp
atgaaaattgttcatcgagatgtcaaggcaacgaatatactgttggatgagaaacttacggccaaagtgtcggacttcggagcttcaaaactggttcttgacgacaaaactcgactttcaactttaatgcagggcacaatgggatacttggaccccgaatatcttcagtccaacacactaacaaaaaagggtgacgtttatagctttggagttgtcctcgtggagctattgacaagcgagaatgcagttcgttttgataaatccaaggcagagagaaacctggccaacctctttgtttctacaattgaagaaaaaggtctgcgcgcgctgggtccaattcttgataatgaaatagtcaaggatggaaactgggagatcatcaaaacagttgggaagcttgccgaaagatgcttaagtgtgaaaggatacgaaaggcctaccatgaaagaagtagcgagaatgcagttcattttgataaatccaaggcagagaaaaacctggccaacctctttgtttctacaattgaagaaaaaggtctgcgcgcactgggtccaattcttgatgatgaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

190

Amino Acids

21.68

Weight (kDa)

9.54

Isoelectric Point (pI)

17.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 324, 326, 542
AcoI YGGCCR 3 cut(s) 60, 282, 500
AcuI CTGAAG 1 cut(s) 149
AflII CTTAAG 1 cut(s) 412
AgsI TTSAA 4 cut(s) 87, 120, 308, 526
AjnI CCWGG 2 cut(s) 279, 497
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 4 cut(s) 83, 204, 226, 397
AluI AGCT 4 cut(s) 83, 204, 226, 397
AoxI GGCC 4 cut(s) 60, 282, 434, 500
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 5 cut(s) 324, 326, 328, 542, 544
AspS9I GGNCC 3 cut(s) 151, 332, 550
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 3 cut(s) 151, 332, 550
BaeGI GKGCMC 1 cut(s) 137
BalI TGGCCA 2 cut(s) 284, 502
BauI CACGAG 1 cut(s) 218
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 2 cut(s) 281, 499
BciVI GTATCC 2 cut(s) 137, 419
BfrI CTTAAG 1 cut(s) 412
BfuI GTATCC 2 cut(s) 137, 419
Bme1390I CCNGG 2 cut(s) 281, 499
Bme18I GGWCC 3 cut(s) 151, 332, 550
BmgT120I GGNCC 3 cut(s) 151, 332, 550
BmiI GGNNCC 3 cut(s) 153, 333, 551
BmrFI CCNGG 2 cut(s) 281, 499
BmrI ACTGGG 2 cut(s) 379, 556
BmsI GCATC 1 cut(s) 398
BmuI ACTGGG 2 cut(s) 379, 556
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BsaJI CCNNGG 2 cut(s) 264, 482
Bse1I ACTGG 3 cut(s) 96, 374, 551
BseBI CCWGG 2 cut(s) 281, 499
BseDI CCNNGG 2 cut(s) 264, 482
BseGI GGATG 2 cut(s) 52, 367
BseNI ACTGG 3 cut(s) 96, 374, 551
BsePI GCGCGC 3 cut(s) 322, 324, 540
BseSI GKGCMC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 3 cut(s) 324, 326, 542
BshFI GGCC 4 cut(s) 62, 284, 436, 502
BsmI GAATGC 2 cut(s) 247, 465
BsnI GGCC 4 cut(s) 62, 284, 436, 502
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 375
BspANI GGCC 4 cut(s) 62, 284, 436, 502
BspFNI CGCG 3 cut(s) 324, 326, 542
BspLI GGNNCC 3 cut(s) 153, 333, 551
BspTI CTTAAG 1 cut(s) 412
BsrI ACTGG 3 cut(s) 96, 374, 551
BssECI CCNNGG 2 cut(s) 264, 482
BssHII GCGCGC 3 cut(s) 322, 324, 540
BssMI GATC 1 cut(s) 375
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 2 cut(s) 264, 482
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 2 cut(s) 281, 499
Bst4CI ACNGT 2 cut(s) 42, 388
BstAFI CTTAAG 1 cut(s) 412
BstC8I GCNNGC 4 cut(s) 324, 326, 399, 542
BstF5I GGATG 2 cut(s) 52, 367
BstFNI CGCG 3 cut(s) 324, 326, 542
BstHHI GCGC 5 cut(s) 324, 326, 328, 542, 544
BstKTI GATC 1 cut(s) 378
BstMBI GATC 1 cut(s) 375
BstNI CCWGG 2 cut(s) 281, 499
BstSCI CCNGG 2 cut(s) 279, 497
BstSLI GKGCMC 1 cut(s) 137
BstUI CGCG 3 cut(s) 324, 326, 542
BsuI GTATCC 2 cut(s) 137, 419
BsuRI GGCC 4 cut(s) 62, 284, 436, 502
BtsCI GGATG 2 cut(s) 52, 367
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 4 cut(s) 324, 326, 399, 542
CfoI GCGC 5 cut(s) 324, 326, 328, 542, 544
Cfr13I GGNCC 3 cut(s) 151, 332, 550
CviAII CATG 1 cut(s) 442
CviJI RGCY 8 cut(s) 62, 83, 204, 226, 284, 397, 436, 502
CviKI_1 RGCY 8 cut(s) 62, 83, 204, 226, 284, 397, 436, 502
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
EaeI YGGCCR 3 cut(s) 60, 282, 500
Eco130I CCWWGG 2 cut(s) 264, 482
Eco147I AGGCCT 1 cut(s) 436
Eco47I GGWCC 3 cut(s) 151, 332, 550
Eco57I CTGAAG 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 279, 497
EcoT14I CCWWGG 2 cut(s) 264, 482
ErhI CCWWGG 2 cut(s) 264, 482
FaeI CATG 1 cut(s) 445
FaiI YATR 3 cut(s) 38, 201, 443
FatI CATG 1 cut(s) 441
FokI GGATG 2 cut(s) 59, 374
GlaI GCGC 5 cut(s) 323, 325, 327, 541, 543
GsaI CCCAGC 1 cut(s) 332
HaeIII GGCC 4 cut(s) 62, 284, 436, 502
HhaI GCGC 5 cut(s) 324, 326, 328, 542, 544
Hin1II CATG 1 cut(s) 445
Hin6I GCGC 5 cut(s) 322, 324, 326, 540, 542
HinP1I GCGC 5 cut(s) 322, 324, 326, 540, 542
HindIII AAGCTT 1 cut(s) 395
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 73, 80
Hpy188III TCNNGA 4 cut(s) 17, 98, 341, 559
HpyCH4III ACNGT 2 cut(s) 42, 388
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 130, 245, 463
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 445
HspAI GCGC 5 cut(s) 322, 324, 326, 540, 542
Kzo9I GATC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 80, 223
LpnPI CCDG 9 cut(s) 77, 116, 266, 293, 314, 355, 484, 511, 532
LweI GCATC 1 cut(s) 398
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 3 cut(s) 155, 320, 538
MfeI CAATTG 2 cut(s) 303, 521
MhlI GDGCHC 1 cut(s) 137
MlsI TGGCCA 2 cut(s) 284, 502
MluCI AATT 5 cut(s) 6, 303, 336, 521, 554
MluNI TGGCCA 2 cut(s) 284, 502
MmeI TCCRAC 3 cut(s) 24, 51, 195
MnlI CCTC 3 cut(s) 227, 299, 517
Mox20I TGGCCA 2 cut(s) 284, 502
MroXI GAANNNNTTC 1 cut(s) 162
MscI TGGCCA 2 cut(s) 284, 502
MseI TTAA 2 cut(s) 125, 413
MslI CAYNNNNRTG 1 cut(s) 18
Msp20I TGGCCA 2 cut(s) 284, 502
MspCI CTTAAG 1 cut(s) 412
MspR9I CCNGG 2 cut(s) 281, 499
MunI CAATTG 2 cut(s) 303, 521
Mva1269I GAATGC 2 cut(s) 247, 465
MvaI CCWGG 2 cut(s) 281, 499
MvnI CGCG 3 cut(s) 324, 326, 542
NdeII GATC 1 cut(s) 375
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 3 cut(s) 153, 333, 551
NmuCI GTSAC 1 cut(s) 191
PauI GCGCGC 3 cut(s) 322, 324, 540
PceI AGGCCT 1 cut(s) 436
PctI GAATGC 2 cut(s) 247, 465
PdmI GAANNNNTTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 279, 497
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 2 cut(s) 279, 497
PspN4I GGNNCC 3 cut(s) 153, 333, 551
PspPI GGNCC 3 cut(s) 151, 332, 550
PteI GCGCGC 3 cut(s) 322, 324, 540
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 125, 413
Sau3AI GATC 1 cut(s) 375
Sau96I GGNCC 3 cut(s) 151, 332, 550
ScrFI CCNGG 2 cut(s) 281, 499
SduI GDGCHC 1 cut(s) 137
SfaNI GCATC 1 cut(s) 398
SinI GGWCC 3 cut(s) 151, 332, 550
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 5 cut(s) 6, 303, 336, 521, 554
SseBI AGGCCT 1 cut(s) 436
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 279, 497
StyI CCWWGG 2 cut(s) 264, 482
TaaI ACNGT 2 cut(s) 42, 388
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 16, 112
TasI AATT 5 cut(s) 6, 303, 336, 521, 554
Tru1I TTAA 2 cut(s) 125, 413
Tru9I TTAA 2 cut(s) 125, 413
TscAI CASTG 1 cut(s) 551
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 4 cut(s) 17, 363, 457, 458
TspRI CASTG 1 cut(s) 551
Vha464I CTTAAG 1 cut(s) 412
VpaK11BI GGWCC 3 cut(s) 151, 332, 550
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.