Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004224

Physical Location & Seq

Genomic Coordinates Reverse (-)

16990351 .. 17002010

Gene Structure 11660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCTTTACTCGGAAGAAAAACTTATAATTGCAGAACCCTTGAGTCCTATGGCCTTGGGACAGGAAAAGGAATTCGAACTCACTTGTGATCATTCCACTAAACCCCCATCACTGAACAGGAAGGACGACAAAAGCCTCCGTGTCACTGATTTTATCCTTGCTGAAGGTAATTTGCAAGCTATGGATTTTATAAGCAAGGATTGTTACGACGAGAGCGGCTATAATGTGGAGAACAACGTTCCTGAGCTCCGTTGGAATACTCCATTCAGCATTTCCGGTTCCAAAAATAGGTTCGTCGCCGTAGGCTGCGACACTTCTGCTGCTTTACAGGGTTTTCGTGGCGAAGAAGAGTTCATGACAGGGTGCAAATCCGTGTGCCTCAAAATCAGCGTGAATCAAAACTCTTGCTCTGGTGTCGGGTGTTGCCAGATCGAAATCCCTGACGGACTGAAGATCATCGTACTCTATGCCTTCCTTGTGCAAGATGGCTACTTTAACTTCAGCGGTGAGAGGAGTTTCGAAGAGCTCAAGAACACAAATAAGATGCCGGTGATCGTTAATTGGCAGATTGGAAATGAGACATGGGAGGTAGCTGAAAAGAATGCTGTGGATTATGCATGCAAGGAAAATTCCACTCATGTCAACCAGACCAAGGGCCTATACCGTGGTTACTATTGCCAGTGCTTACCAGGCTACGAAGGGAACCCATACATCGGTTGCCGATATATTGACGAGTGTTTGGCTGAAATTAACCCATGCGGGAATGGAACGTGTCAAAATTCACCTGCAAGTTATTCTTGTAAATGTAAAAAATGGTTCAAAGATGATGGTTCTTTGAAGTGCATTGCTCATCCCACGGCAAACAACACTCCTCTGAAAATTTCATTGGCCCAAGTCTTTACTGAAGAAGGGCTTAAGAAGGCAACAAAGAATTTCGATGAAAATGAAAAAATTGGTGAAGGAGGTTATGGAACAGTCTACAAAGGCGTACTCGAAGAAAAAACAGCGGTTGCAATAAAGATTTCCAAAATGACCACCCAGGTCGAAAGTGATCAATTTATTAATGAGGTCATTGTTCTTTCTCAAATCAGTCATAGAAATGTGGTGAGCCTGCTAGCTGCTGGTTGGAGACAAAAATGCCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK hEGF

Protein Analysis

382

Amino Acids

42.48

Weight (kDa)

5.24

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	313 - 373	4.9e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	315 - 375	3.5e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004224)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10610
malus_domestica	MD05G1270300.v1.1 MD05G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0329511 RchiOBHm_Chr1g0336171 RchiOBHm_Chr5g0016711 RchiOBHm_Chr5g0016781 RchiOBHm_Chr5g0016821 RchiOBHm_Chr5g0017081 RchiOBHm_Chr5g0017111 RchiOBHm_Chr5g0017281 RchiOBHm_Chr5g0017311 RchiOBHm_Chr5g0054731
rosa_laevigata	RLG00000002400 RLG00000023080 RLG00000029879 RLG00000029880
rosa_multiflora	Rmu_sc0000441.1_g000086 Rmu_sc0001235.1_g000006 Rmu_sc0001423.1_g000044 Rmu_sc0003630.1_g000003 Rmu_sc0003801.1_g000025 Rmu_sc0005319.1_g000021 Rmu_sc0005418.1_g000011 Rmu_sc0008053.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012580 Rroxscaffold_1G00013300 Rroxscaffold_4G00321010 Rroxscaffold_6G00395830 Rroxscaffold_6G00395840
rosa_rugosa	Rorug03G0224700
rosa_wichuraiana	Rw3G024380 Rw3G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	26, 191
AarI	CACCTGC	1 cut(s)	793
Acc36I	ACCTGC	1 cut(s)	793
AccBSI	CCGCTC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	978
AciI	CCGC	4 cut(s)	216, 504, 759, 1007
AclI	AACGTT	1 cut(s)	237
AcsI	RAATTY	5 cut(s)	71, 628, 778, 879, 931
AcuI	CTGAAG	4 cut(s)	183, 470, 484, 924
AfaI	GTAC	2 cut(s)	462, 990
AfiI	CCNNNNNNNGG	3 cut(s)	288, 652, 713
AflII	CTTAAG	1 cut(s)	914
AflIII	ACRYGT	1 cut(s)	770
AgsI	TTSAA	2 cut(s)	820, 838
AjnI	CCWGG	2 cut(s)	688, 1038
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 869, 901
AluBI	AGCT	5 cut(s)	179, 247, 526, 593, 1118
AluI	AGCT	5 cut(s)	179, 247, 526, 593, 1118
Alw21I	GWGCWC	2 cut(s)	249, 528
Alw26I	GTCTC	2 cut(s)	572, 1123
AoxI	GGCC	3 cut(s)	51, 655, 888
ApeKI	GCWGC	3 cut(s)	306, 320, 1118
ApoI	RAATTY	5 cut(s)	71, 628, 778, 879, 931
AseI	ATTAAT	1 cut(s)	1062
AspS9I	GGNCC	2 cut(s)	655, 889
AsuHPI	GGTGA	5 cut(s)	518, 562, 774, 968, 1117
AsuII	TTCGAA	2 cut(s)	75, 519
AsuNHI	GCTAGC	1 cut(s)	1114
BanII	GRGCYC	2 cut(s)	249, 528
Bbv12I	GWGCWC	2 cut(s)	249, 528
BbvI	GCAGC	3 cut(s)	293, 307, 1105
BccI	CCATC	3 cut(s)	115, 479, 821
BceAI	ACGGC	2 cut(s)	284, 873
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciT130I	CCWGG	2 cut(s)	690, 1040
BclI	TGATCA	2 cut(s)	88, 1051
BcoDI	GTCTC	2 cut(s)	572, 1123
BfaI	CTAG	2 cut(s)	1115, 1147
BfrI	CTTAAG	1 cut(s)	914
BfuAI	ACCTGC	1 cut(s)	793
BisI	GCNGC	4 cut(s)	217, 307, 321, 1119
BlsI	GCNGC	4 cut(s)	218, 308, 322, 1120
Bme1390I	CCNGG	2 cut(s)	690, 1040
BmgT120I	GGNCC	2 cut(s)	655, 889
BmiI	GGNNCC	2 cut(s)	280, 704
BmrFI	CCNGG	2 cut(s)	690, 1040
BmsI	GCATC	1 cut(s)	534
BmtI	GCTAGC	1 cut(s)	1118
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	2 cut(s)	75, 519
BpuEI	CTTGAG	2 cut(s)	61, 512
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	6 cut(s)	54, 651, 664, 855, 1038, 1141
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 652, 713
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	843
Bse8I	GATNNNNATC	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	690, 1040
BseDI	CCNNGG	6 cut(s)	54, 651, 664, 855, 1038, 1141
BseGI	GGATG	1 cut(s)	850
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	3 cut(s)	288, 652, 713
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	2 cut(s)	526, 861
BseXI	GCAGC	3 cut(s)	293, 307, 1105
BshFI	GGCC	3 cut(s)	53, 657, 890
BsiHKAI	GWGCWC	2 cut(s)	249, 528
BsiSI	CCGG	2 cut(s)	276, 548
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	3 cut(s)	288, 652, 713
BsmAI	GTCTC	2 cut(s)	572, 1123
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	53, 657, 890
Bsp119I	TTCGAA	2 cut(s)	75, 519
Bsp1286I	GDGCHC	2 cut(s)	249, 528
Bsp143I	GATC	5 cut(s)	88, 429, 453, 552, 1051
BspACI	CCGC	4 cut(s)	216, 504, 759, 1007
BspANI	GGCC	3 cut(s)	53, 657, 890
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	280, 704
BspMI	ACCTGC	1 cut(s)	793
BspOI	GCTAGC	1 cut(s)	1118
BspQI	GCTCTTC	1 cut(s)	516
BspT104I	TTCGAA	2 cut(s)	75, 519
BspTI	CTTAAG	1 cut(s)	914
BsrBI	CCGCTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	6 cut(s)	54, 651, 664, 855, 1038, 1141
BssMI	GATC	5 cut(s)	88, 429, 453, 552, 1051
BssT1I	CCWWGG	3 cut(s)	54, 651, 1141
Bst2UI	CCWGG	2 cut(s)	690, 1040
Bst4CI	ACNGT	2 cut(s)	665, 976
Bst6I	CTCTTC	2 cut(s)	342, 516
BstAFI	CTTAAG	1 cut(s)	914
BstBI	TTCGAA	2 cut(s)	75, 519
BstC8I	GCNNGC	4 cut(s)	177, 619, 1112, 1116
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	2 cut(s)	664, 855
BstF5I	GGATG	1 cut(s)	850
BstKTI	GATC	5 cut(s)	91, 432, 456, 555, 1054
BstMAI	GTCTC	2 cut(s)	572, 1123
BstMBI	GATC	5 cut(s)	88, 429, 453, 552, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	690
BstNI	CCWGG	2 cut(s)	690, 1040
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	688, 1038
BstV1I	GCAGC	3 cut(s)	293, 307, 1105
BsuRI	GGCC	3 cut(s)	53, 657, 890
BtgI	CCRYGG	2 cut(s)	664, 855
BtsCI	GGATG	1 cut(s)	850
BtsIMutI	CAGTG	3 cut(s)	110, 144, 686
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	4 cut(s)	177, 619, 1112, 1116
CciI	TCATGA	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	655, 889
Csp6I	GTAC	2 cut(s)	461, 989
CviAII	CATG	5 cut(s)	355, 582, 618, 638, 756
CviQI	GTAC	2 cut(s)	461, 989
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	5 cut(s)	90, 431, 455, 554, 1053
DpnII	GATC	5 cut(s)	88, 429, 453, 552, 1051
Eam1104I	CTCTTC	2 cut(s)	342, 516
EarI	CTCTTC	2 cut(s)	342, 516
Ecl136II	GAGCTC	2 cut(s)	247, 526
Eco130I	CCWWGG	3 cut(s)	54, 651, 1141
Eco24I	GRGCYC	2 cut(s)	249, 528
Eco53kI	GAGCTC	2 cut(s)	247, 526
Eco57I	CTGAAG	4 cut(s)	183, 470, 484, 924
EcoICRI	GAGCTC	2 cut(s)	247, 526
EcoO109I	RGGNCCY	1 cut(s)	655
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	688, 1038
EcoT14I	CCWWGG	3 cut(s)	54, 651, 1141
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	2 cut(s)	249, 528
ErhI	CCWWGG	3 cut(s)	54, 651, 1141
FaeI	CATG	5 cut(s)	358, 585, 621, 641, 759
FalI	AAGNNNNNCTT	5 cut(s)	38, 781, 813, 897, 929
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	5 cut(s)	354, 581, 617, 637, 755
FauI	CCCGC	1 cut(s)	752
FbaI	TGATCA	2 cut(s)	88, 1051
FblI	GTMKAC	1 cut(s)	978
Fnu4HI	GCNGC	4 cut(s)	217, 307, 321, 1119
FokI	GGATG	1 cut(s)	837
FriOI	GRGCYC	2 cut(s)	249, 528
Fsp4HI	GCNGC	4 cut(s)	217, 307, 321, 1119
FspBI	CTAG	2 cut(s)	1115, 1147
GluI	GCNGC	4 cut(s)	217, 307, 321, 1119
HaeIII	GGCC	3 cut(s)	53, 657, 890
HapII	CCGG	2 cut(s)	276, 548
Hin1II	CATG	5 cut(s)	358, 585, 621, 641, 759
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	2 cut(s)	43, 394
HpaII	CCGG	2 cut(s)	276, 548
HphI	GGTGA	5 cut(s)	518, 562, 774, 968, 1117
Hpy166II	GTNNAC	2 cut(s)	643, 979
Hpy188I	TCNGA	2 cut(s)	13, 876
Hpy188III	TCNNGA	3 cut(s)	242, 355, 529
Hpy8I	GTNNAC	2 cut(s)	643, 979
Hpy99I	CGWCG	2 cut(s)	212, 299
HpyAV	CCTTC	7 cut(s)	115, 158, 481, 692, 902, 913, 953
HpyCH4III	ACNGT	2 cut(s)	665, 976
HpyCH4IV	ACGT	2 cut(s)	237, 770
HpyCH4V	TGCA	9 cut(s)	32, 175, 366, 481, 617, 621, 788, 843, 1013
HpyF10VI	GCNNNNNNNGC	1 cut(s)	690
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	237, 770
Hsp92II	CATG	5 cut(s)	358, 585, 621, 641, 759
Ksp22I	TGATCA	2 cut(s)	88, 1051
Kzo9I	GATC	5 cut(s)	88, 429, 453, 552, 1051
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	3 cut(s)	293, 307, 1105
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	1115, 1147
MaeII	ACGT	2 cut(s)	237, 770
MaeIII	GTNAC	3 cut(s)	142, 203, 668
MalI	GATC	5 cut(s)	90, 431, 455, 554, 1053
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	5 cut(s)	88, 429, 453, 552, 1051
MboII	GAAGA	7 cut(s)	26, 356, 359, 463, 533, 917, 1007
MhlI	GDGCHC	2 cut(s)	249, 528
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	2 cut(s)	233, 1106
MnlI	CCTC	7 cut(s)	146, 389, 504, 580, 882, 956, 1060
Mph1103I	ATGCAT	1 cut(s)	619
MseI	TTAA	5 cut(s)	495, 558, 750, 915, 1062
MslI	CAYNNNNRTG	1 cut(s)	1098
MspA1I	CMGCKG	2 cut(s)	504, 1007
MspCI	CTTAAG	1 cut(s)	914
MspI	CCGG	2 cut(s)	276, 548
MspR9I	CCNGG	2 cut(s)	690, 1040
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	2 cut(s)	690, 1040
MwoI	GCNNNNNNNGC	1 cut(s)	690
NdeII	GATC	5 cut(s)	88, 429, 453, 552, 1051
NheI	GCTAGC	1 cut(s)	1114
NlaIII	CATG	5 cut(s)	358, 585, 621, 641, 759
NlaIV	GGNNCC	2 cut(s)	280, 704
NmuCI	GTSAC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	621
NspV	TTCGAA	2 cut(s)	75, 519
PaeI	GCATGC	1 cut(s)	621
PagI	TCATGA	1 cut(s)	354
PaqCI	CACCTGC	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	516
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	218, 308, 322, 1120
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PshBI	ATTAAT	1 cut(s)	1062
PsiI	TTATAA	2 cut(s)	26, 191
Psp124BI	GAGCTC	2 cut(s)	249, 528
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	688, 1038
PspGI	CCWGG	2 cut(s)	688, 1038
PspN4I	GGNNCC	2 cut(s)	280, 704
PspPI	GGNCC	2 cut(s)	655, 889
RsaI	GTAC	2 cut(s)	462, 990
RsaNI	GTAC	2 cut(s)	461, 989
RseI	CAYNNNNRTG	1 cut(s)	1098
SacI	GAGCTC	2 cut(s)	249, 528
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	5 cut(s)	495, 558, 750, 915, 1062
SatI	GCNGC	4 cut(s)	217, 307, 321, 1119
Sau3AI	GATC	5 cut(s)	88, 429, 453, 552, 1051
Sau96I	GGNCC	2 cut(s)	655, 889
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	690, 1040
SduI	GDGCHC	2 cut(s)	249, 528
SfaNI	GCATC	1 cut(s)	534
SfuI	TTCGAA	2 cut(s)	75, 519
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SmlI	CTYRAG	3 cut(s)	40, 527, 914
SmoI	CTYRAG	3 cut(s)	40, 527, 914
SphI	GCATGC	1 cut(s)	621
SsiI	CCGC	4 cut(s)	216, 504, 759, 1007
SspMI	CTAG	2 cut(s)	1115, 1147
SstI	GAGCTC	2 cut(s)	249, 528
StyD4I	CCNGG	2 cut(s)	688, 1038
StyI	CCWWGG	3 cut(s)	54, 651, 1141
TaaI	ACNGT	2 cut(s)	665, 976
TaiI	ACGT	2 cut(s)	240, 773
TaqI	TCGA	6 cut(s)	75, 432, 519, 936, 993, 1044
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	5 cut(s)	495, 558, 750, 915, 1062
Tru9I	TTAA	5 cut(s)	495, 558, 750, 915, 1062
TscAI	CASTG	3 cut(s)	117, 151, 686
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	306, 320, 1118
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	343, 873, 954, 960
TspGWI	ACGGA	4 cut(s)	128, 239, 361, 459
TspRI	CASTG	3 cut(s)	117, 151, 686
Vha464I	CTTAAG	1 cut(s)	914
VspI	ATTAAT	1 cut(s)	1062
XapI	RAATTY	5 cut(s)	71, 628, 778, 879, 931
XceI	RCATGY	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	978
XspI	CTAG	2 cut(s)	1115, 1147
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.