Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004224

Physical Location & Seq

Genomic Coordinates Forward (+)

12006483 .. 12006884

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAAATTCTTCATCGAGATGTCAAGGCAACGAATATACTGTTGGATGAGAAACTTACGGCCAAAGTGTCGGACTTTGGAGCTTCAAAACTGGTTCTTGACGACAAAACTCGACTTTTAACTTTAATGCAGGGCACAATGGGATACTTGGACCCCAAATATCTTCAGTCCAACACACTAACAAAAAAGGGTGACGTTTATAGCTTTGGAGTTGTCCTCGTGGAGATACTGACAAGCGAGAATGCAGTTCGTTTTGATAAATCCAAGGCAGAGAGAAACCTGGCCAACCTCTTTGTTTCTACAATTTGTTTGGCTCCAAAACCAGTTGGCTTGCAAACTGTCTCTTTTGGGCGAGTGATTGCGCAGGCATGCCAGCACCGCGGGGTGCAGTCGTTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

133

Amino Acids

14.61

Weight (kDa)

9.48

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 96	9.2e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 80	1.7e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004224)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10610
malus_domestica	MD05G1270300.v1.1 MD05G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0329511 RchiOBHm_Chr1g0336171 RchiOBHm_Chr5g0016711 RchiOBHm_Chr5g0016781 RchiOBHm_Chr5g0016821 RchiOBHm_Chr5g0017081 RchiOBHm_Chr5g0017111 RchiOBHm_Chr5g0017281 RchiOBHm_Chr5g0017311 RchiOBHm_Chr5g0054731
rosa_laevigata	RLG00000002400 RLG00000023080 RLG00000029879 RLG00000029880
rosa_multiflora	Rmu_sc0000441.1_g000086 Rmu_sc0001235.1_g000006 Rmu_sc0001423.1_g000044 Rmu_sc0003630.1_g000003 Rmu_sc0003801.1_g000025 Rmu_sc0005319.1_g000021 Rmu_sc0005418.1_g000011 Rmu_sc0008053.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012580 Rroxscaffold_1G00013300 Rroxscaffold_4G00321010 Rroxscaffold_6G00395830 Rroxscaffold_6G00395840
rosa_rugosa	Rorug03G0224700
rosa_wichuraiana	Rw3G024380 Rw3G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	363
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	379, 381
AcoI	YGGCCR	2 cut(s)	60, 282
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	83, 204
AluI	AGCT	2 cut(s)	83, 204
Alw26I	GTCTC	1 cut(s)	346
AoxI	GGCC	2 cut(s)	60, 282
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	284
BauI	CACGAG	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	153, 315
BmrFI	CCNGG	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
BsaJI	CCNNGG	2 cut(s)	264, 379
Bse1I	ACTGG	2 cut(s)	96, 323
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	264, 379
BseGI	GGATG	1 cut(s)	52
BseNI	ACTGG	2 cut(s)	96, 323
BseSI	GKGCMC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	62, 284
BsmAI	GTCTC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	62, 284
Bsp1286I	GDGCHC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	379, 381
BspANI	GGCC	2 cut(s)	62, 284
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	153, 315
BsrI	ACTGG	2 cut(s)	96, 323
BssECI	CCNNGG	2 cut(s)	264, 379
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	42, 340
BstC8I	GCNNGC	4 cut(s)	332, 366, 370, 374
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	137
BstUI	CGCG	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	62, 284
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	4 cut(s)	332, 366, 370, 374
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	151
Cfr42I	CCGCGG	1 cut(s)	382
CviAII	CATG	1 cut(s)	369
CviJI	RGCY	6 cut(s)	62, 83, 204, 284, 314, 330
CviKI_1	RGCY	6 cut(s)	62, 83, 204, 284, 314, 330
EaeI	YGGCCR	2 cut(s)	60, 282
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	372
FaiI	YATR	3 cut(s)	38, 201, 370
FatI	CATG	1 cut(s)	368
FauI	CCCGC	1 cut(s)	374
FokI	GGATG	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	363
GlaI	GCGC	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	62, 284
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	1 cut(s)	372
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	17, 98
HpyCH4III	ACNGT	2 cut(s)	42, 340
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	4 cut(s)	130, 245, 334, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	372
HspAI	GCGC	1 cut(s)	362
KspI	CCGCGG	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	80, 319
LpnPI	CCDG	7 cut(s)	77, 116, 266, 293, 336, 350, 386
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	191
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	137
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	2 cut(s)	6, 303
MluNI	TGGCCA	1 cut(s)	284
MmeI	TCCRAC	3 cut(s)	24, 51, 195
MnlI	CCTC	2 cut(s)	227, 299
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	2 cut(s)	119, 125
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	378
NlaIII	CATG	1 cut(s)	372
NlaIV	GGNNCC	2 cut(s)	153, 315
NmuCI	GTSAC	1 cut(s)	191
NsbI	TGCGCA	1 cut(s)	363
NspI	RCATGY	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	372
PctI	GAATGC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	153, 315
PspPI	GGNCC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	18
SacII	CCGCGG	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	119, 125
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	5 cut(s)	85, 198, 206, 282, 291
Sfr303I	CCGCGG	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	2 cut(s)	6, 303
SsiI	CCGC	2 cut(s)	379, 381
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	42, 340
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	16, 112
TasI	AATT	2 cut(s)	6, 303
Tru1I	TTAA	2 cut(s)	119, 125
Tru9I	TTAA	2 cut(s)	119, 125
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.