Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008053.1

Orthogroup ID

OG0004224

Physical Location & Seq

Genomic Coordinates Reverse (-)

80931 .. 83109

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008053.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgaaaattgttcatcgagatgtcaaggcaacgaatatactgttggatgagaaacttagggccaaagtgtcggactttggagcttcaaaactggttcttgacgacaaaactcgactttcaactttaatgcagggcacaatgggatacttggacccagaatatcttcagtccaacacactaacaaaaaagggtgacgtttatagctttggagttgtcctcgtggagctactgacaagcgagaatgcagttcgttttgataaatccaaggcaaagagaaacctggccaacctcttggtttctacaattgaagaaaaagagagaaacctggccaacctctttgtttctacaattgaagaaaaaggtctgcgtgcactgggtccaattcctgatgatgaaatagtcaaggatggaaactgggagaccatcaaaaaagttgggaagcttgccgaaagatgcttaagtactctctctctctctccctcctcggtgcaatcgccggcgccagactctctctcctcgtcaccgcctgtgtttttgctcgctgtgattgccggcgttgctctctctcctcttctccgcctcggttttgctcgctgtgatttactttcggtgcagatcgccgacgccagattcgcttcctcccttggctccgttgtcttcttcgtcgtcgtgggtggctccgctaaaacccccagaactcggactcctcttggatttccaaagccaaagccaacgacgacgacgcttccgcattcatcatcatcacaattcgatataatttccactaccgatgcggaattcaatgaaggattggttggggaaagcaatgtggaagaatcggagattgatgcttctccggcgagttcacctgaggagaatgccatccttgatttgaccacagcagatgaagtcgaaagctcagcagtcgttagtcttgactctcttactcatcatcttcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

320

Amino Acids

34.42

Weight (kDa)

5.19

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004224)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10610
malus_domestica	MD05G1270300.v1.1 MD05G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0329511 RchiOBHm_Chr1g0336171 RchiOBHm_Chr5g0016711 RchiOBHm_Chr5g0016781 RchiOBHm_Chr5g0016821 RchiOBHm_Chr5g0017081 RchiOBHm_Chr5g0017111 RchiOBHm_Chr5g0017281 RchiOBHm_Chr5g0017311 RchiOBHm_Chr5g0054731
rosa_laevigata	RLG00000002400 RLG00000023080 RLG00000029879 RLG00000029880
rosa_multiflora	Rmu_sc0000441.1_g000086 Rmu_sc0001235.1_g000006 Rmu_sc0001423.1_g000044 Rmu_sc0003630.1_g000003 Rmu_sc0003801.1_g000025 Rmu_sc0005319.1_g000021 Rmu_sc0005418.1_g000011 Rmu_sc0008053.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012580 Rroxscaffold_1G00013300 Rroxscaffold_4G00321010 Rroxscaffold_6G00395830 Rroxscaffold_6G00395840
rosa_rugosa	Rorug03G0224700
rosa_wichuraiana	Rw3G024380 Rw3G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AciI	CCGC	5 cut(s)	524, 577, 681, 749, 794
AcoI	YGGCCR	2 cut(s)	282, 327
AcsI	RAATTY	1 cut(s)	797
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	2 cut(s)	500, 624
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	699
AflII	CTTAAG	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	87, 120, 308, 353, 802
AjnI	CCWGG	2 cut(s)	279, 324
AjuI	GAANNNNNNNTTGG	4 cut(s)	26, 58, 798, 830
AloI	GAACNNNNNNTCC	2 cut(s)	688, 720
AluBI	AGCT	5 cut(s)	83, 204, 226, 442, 918
AluI	AGCT	5 cut(s)	83, 204, 226, 442, 918
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	369
AoxI	GGCC	3 cut(s)	60, 282, 327
ApaLI	GTGCAC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	797
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	3 cut(s)	60, 151, 377
AsuHPI	GGTGA	3 cut(s)	203, 513, 858
AvaII	GGWCC	2 cut(s)	151, 377
AxyI	CCTNAGG	1 cut(s)	870
BaeGI	GKGCMC	2 cut(s)	137, 373
BalI	TGGCCA	2 cut(s)	284, 329
BanI	GGYRCC	1 cut(s)	499
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	649
Bbv12I	GWGCWC	1 cut(s)	373
BccI	CCATC	3 cut(s)	401, 431, 890
BciT130I	CCWGG	2 cut(s)	281, 326
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	503
BfrI	CTTAAG	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	137
BlpI	GCTNAGC	1 cut(s)	919
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	281, 326
Bme18I	GGWCC	2 cut(s)	151, 377
BmgT120I	GGNCC	3 cut(s)	60, 151, 377
BmiI	GGNNCC	5 cut(s)	153, 378, 501, 649, 679
BmrFI	CCNGG	2 cut(s)	281, 326
BmrI	ACTGGG	2 cut(s)	383, 424
BmsI	GCATC	3 cut(s)	443, 781, 838
BmuI	ACTGGG	2 cut(s)	383, 424
BpiI	GAAGAC	1 cut(s)	649
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
Bpu1102I	GCTNAGC	1 cut(s)	919
BsaHI	GRCGYC	2 cut(s)	500, 624
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	4 cut(s)	264, 483, 580, 643
BsaXI	ACNNNNNCTCC	4 cut(s)	497, 527, 688, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
Bse118I	RCCGGY	2 cut(s)	496, 551
Bse1I	ACTGG	3 cut(s)	96, 378, 419
Bse21I	CCTNAGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	832
BseBI	CCWGG	2 cut(s)	281, 326
BseDI	CCNNGG	4 cut(s)	264, 483, 580, 643
BseGI	GGATG	3 cut(s)	52, 412, 882
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	2 cut(s)	861, 933
BseNI	ACTGG	3 cut(s)	96, 378, 419
BseRI	GAGGAG	5 cut(s)	472, 505, 558, 696, 887
BseSI	GKGCMC	2 cut(s)	137, 373
BsgI	GTGCAG	1 cut(s)	632
BshFI	GGCC	3 cut(s)	62, 284, 329
BshNI	GGYRCC	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	3 cut(s)	497, 552, 857
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	3 cut(s)	247, 751, 883
BsnI	GGCC	3 cut(s)	62, 284, 329
Bso31I	GGTCTC	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	137, 373
Bsp143I	GATC	1 cut(s)	615
Bsp1720I	GCTNAGC	1 cut(s)	919
BspACI	CCGC	5 cut(s)	524, 577, 681, 749, 794
BspANI	GGCC	3 cut(s)	62, 284, 329
BspCNI	CTCAG	2 cut(s)	862, 932
BspLI	GGNNCC	5 cut(s)	153, 378, 501, 649, 679
BspT107I	GGYRCC	1 cut(s)	499
BspTI	CTTAAG	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	832
BsrFI	RCCGGY	2 cut(s)	496, 551
BsrI	ACTGG	3 cut(s)	96, 378, 419
BssAI	RCCGGY	2 cut(s)	496, 551
BssECI	CCNNGG	4 cut(s)	264, 483, 580, 643
BssMI	GATC	1 cut(s)	615
BssNI	GRCGYC	2 cut(s)	500, 624
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	264, 643
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	281, 326
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	576
BstACI	GRCGYC	2 cut(s)	500, 624
BstAFI	CTTAAG	1 cut(s)	457
BstC8I	GCNNGC	6 cut(s)	369, 444, 498, 540, 553, 592
BstDEI	CTNAG	3 cut(s)	56, 870, 919
BstF5I	GGATG	3 cut(s)	52, 412, 882
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	615
BstMWI	GCNNNNNNNGC	4 cut(s)	548, 557, 632, 857
BstNI	CCWGG	2 cut(s)	281, 326
BstSCI	CCNGG	2 cut(s)	279, 324
BstSLI	GKGCMC	2 cut(s)	137, 373
BstV2I	GAAGAC	1 cut(s)	649
BstXI	CCANNNNNNTGG	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	870
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	62, 284, 329
BtsCI	GGATG	3 cut(s)	52, 412, 882
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	6 cut(s)	369, 444, 498, 540, 553, 592
CfoI	GCGC	1 cut(s)	502
Cfr10I	RCCGGY	2 cut(s)	496, 551
Cfr13I	GGNCC	3 cut(s)	60, 151, 377
CseI	GACGC	2 cut(s)	632, 751
Csp6I	GTAC	1 cut(s)	462
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	3 cut(s)	56, 870, 919
DinI	GGCGCC	1 cut(s)	501
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
EaeI	YGGCCR	2 cut(s)	282, 327
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
EciI	GGCGGA	1 cut(s)	566
Eco130I	CCWWGG	2 cut(s)	264, 643
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	151, 377
Eco57I	CTGAAG	1 cut(s)	149
Eco81I	CCTNAGG	1 cut(s)	870
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	2 cut(s)	279, 324
EcoT14I	CCWWGG	2 cut(s)	264, 643
EgeI	GGCGCC	1 cut(s)	501
EheI	GGCGCC	1 cut(s)	501
ErhI	CCWWGG	2 cut(s)	264, 643
FaiI	YATR	3 cut(s)	38, 201, 776
FokI	GGATG	3 cut(s)	59, 419, 869
GlaI	GCGC	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	62, 284, 329
HapII	CCGG	3 cut(s)	497, 552, 857
HgaI	GACGC	2 cut(s)	632, 751
HhaI	GCGC	1 cut(s)	502
Hin1I	GRCGYC	2 cut(s)	500, 624
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	5 cut(s)	506, 630, 703, 836, 938
HpaII	CCGG	3 cut(s)	497, 552, 857
HphI	GGTGA	3 cut(s)	203, 513, 858
Hpy166II	GTNNAC	2 cut(s)	371, 866
Hpy188I	TCNGA	3 cut(s)	73, 702, 841
Hpy188III	TCNNGA	4 cut(s)	17, 98, 386, 935
Hpy8I	GTNNAC	2 cut(s)	371, 866
Hpy99I	CGWCG	6 cut(s)	626, 668, 671, 739, 742, 745
HpyAV	CCTTC	1 cut(s)	800
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	130, 245, 371, 490, 613
HpyF10VI	GCNNNNNNNGC	4 cut(s)	548, 557, 632, 857
HpyF3I	CTNAG	3 cut(s)	56, 870, 919
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	500, 624
HspAI	GCGC	1 cut(s)	500
KasI	GGCGCC	1 cut(s)	499
KroI	GCCGGC	2 cut(s)	496, 551
KroNI	GCCGGC	2 cut(s)	498, 553
Kzo9I	GATC	1 cut(s)	615
LmnI	GCTCC	4 cut(s)	80, 223, 653, 683
LweI	GCATC	3 cut(s)	443, 781, 838
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	191, 519
MalI	GATC	1 cut(s)	617
MboI	GATC	1 cut(s)	615
MboII	GAAGA	8 cut(s)	155, 320, 365, 563, 649, 652, 845, 947
MfeI	CAATTG	2 cut(s)	303, 348
MhlI	GDGCHC	2 cut(s)	137, 373
MlsI	TGGCCA	2 cut(s)	284, 329
MluCI	AATT	7 cut(s)	6, 303, 348, 381, 767, 777, 797
MluNI	TGGCCA	2 cut(s)	284, 329
Mly113I	GGCGCC	1 cut(s)	500
MlyI	GAGTC	3 cut(s)	500, 697, 932
MmeI	TCCRAC	3 cut(s)	24, 51, 195
Mox20I	TGGCCA	2 cut(s)	284, 329
MreI	CGCCGGCG	1 cut(s)	496
MroNI	GCCGGC	2 cut(s)	496, 551
MroXI	GAANNNNTTC	1 cut(s)	162
MscI	TGGCCA	2 cut(s)	284, 329
MseI	TTAA	2 cut(s)	125, 458
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	2 cut(s)	284, 329
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	3 cut(s)	497, 552, 857
MspR9I	CCNGG	2 cut(s)	281, 326
MunI	CAATTG	2 cut(s)	303, 348
Mva1269I	GAATGC	3 cut(s)	247, 751, 883
MvaI	CCWGG	2 cut(s)	281, 326
MwoI	GCNNNNNNNGC	4 cut(s)	548, 557, 632, 857
NaeI	GCCGGC	2 cut(s)	498, 553
NarI	GGCGCC	1 cut(s)	500
NdeII	GATC	1 cut(s)	615
NgoMIV	GCCGGC	2 cut(s)	496, 551
NlaIV	GGNNCC	5 cut(s)	153, 378, 501, 649, 679
NmuCI	GTSAC	2 cut(s)	191, 519
PctI	GAATGC	3 cut(s)	247, 751, 883
PdiI	GCCGGC	2 cut(s)	498, 553
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	630, 836
PleI	GAGTC	3 cut(s)	500, 697, 932
PluTI	GGCGCC	1 cut(s)	503
PpsI	GAGTC	3 cut(s)	500, 697, 932
Psp6I	CCWGG	2 cut(s)	279, 324
PspGI	CCWGG	2 cut(s)	279, 324
PspN4I	GGNNCC	5 cut(s)	153, 378, 501, 649, 679
PspPI	GGNCC	3 cut(s)	60, 151, 377
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	125, 458
Sau3AI	GATC	1 cut(s)	615
Sau96I	GGNCC	3 cut(s)	60, 151, 377
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	3 cut(s)	500, 697, 932
ScrFI	CCNGG	2 cut(s)	281, 326
SduI	GDGCHC	2 cut(s)	137, 373
SfaNI	GCATC	3 cut(s)	443, 781, 838
SfoI	GGCGCC	1 cut(s)	501
SgrAI	CRCCGGYG	1 cut(s)	496
SinI	GGWCC	2 cut(s)	151, 377
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	7 cut(s)	6, 303, 348, 381, 767, 777, 797
SsiI	CCGC	5 cut(s)	524, 577, 681, 749, 794
SspDI	GGCGCC	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	279, 324
StyI	CCWWGG	2 cut(s)	264, 643
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	16, 112, 771, 912
TasI	AATT	7 cut(s)	6, 303, 348, 381, 767, 777, 797
TatI	WGTACW	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	630, 836
Tru1I	TTAA	2 cut(s)	125, 458
Tru9I	TTAA	2 cut(s)	125, 458
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	191, 519
Tsp45I	GTSAC	2 cut(s)	191, 519
TspDTI	ATGAA	5 cut(s)	17, 408, 744, 819, 921
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	1 cut(s)	378
Vha464I	CTTAAG	1 cut(s)	457
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	151, 377
XapI	RAATTY	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.