Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004224

Physical Location & Seq

Genomic Coordinates Forward (+)

15451044 .. 15455175

Gene Structure 4132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCGGTTGGTACGGTTTGATTCGGGAGAATTTGCTAGCCCTAGAAGGAGAGGGCAGCAAAGCATCTTGGAAGACAAAAGGTTCAGACCTCATTCCATAGCTCTCCACTACCTTTCTCTCGCGTTGCACTCCCCACAACGACACCTCTCGGGTGTCAATGATGTCAAAGAAGTTGCTGCTGTTGCATTAAAAAGAGAGTTCATTAAACTCAAAGAAAAGCACTTCAAAGAGAATGGTGGCTTATTGTTACTGCAACAACTCGCTAGTCATGGAAGCTCGATGAGGACAACAAAAATCTTTCCTGCTGAAGAACTTGAGAAGGCAACAAACAACTATCATGAGAGTAGAGTCCTTGGAGAAGGAGGTTATGGAACAGTTTACAAAGGAATACTGCCGGATGAAACAGTGGTTGCCATAAAGAAGTCGAAAGGTGGTGCCCTGACCCAGAGTGATCAATTTGTTAACGAGGTGATTGTACTTTCTCAAATCAACCACAGAAATGTGGTCAAGCTATTGGGTTGTTGTTTAGAAACGGAAGCCCCTTTACTAGTATACGAATTCATTACCCATGGCACTCTTTATGAGCACATTCATAAAAAAAGATCATCACTTCCATTTGAATTAAGAATGAAGATAGCAACTCAAAGCGCAGAAGCACTGTCCCACTTACACTCCTCAAATTTCCACACCAATAATACATCGGGATGTGAAAACAGCAAATATTCTGATACCATTGACATAGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTGATGGAGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

282

Amino Acids

31.61

Weight (kDa)

8.34

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	112 - 228	4.2e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	115 - 228	6.7e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004224)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10610
malus_domestica	MD05G1270300.v1.1 MD05G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0329511 RchiOBHm_Chr1g0336171 RchiOBHm_Chr5g0016711 RchiOBHm_Chr5g0016781 RchiOBHm_Chr5g0016821 RchiOBHm_Chr5g0017081 RchiOBHm_Chr5g0017111 RchiOBHm_Chr5g0017281 RchiOBHm_Chr5g0017311 RchiOBHm_Chr5g0054731
rosa_laevigata	RLG00000002400 RLG00000023080 RLG00000029879 RLG00000029880
rosa_multiflora	Rmu_sc0000441.1_g000086 Rmu_sc0001235.1_g000006 Rmu_sc0001423.1_g000044 Rmu_sc0003630.1_g000003 Rmu_sc0003801.1_g000025 Rmu_sc0005319.1_g000021 Rmu_sc0005418.1_g000011 Rmu_sc0008053.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012580 Rroxscaffold_1G00013300 Rroxscaffold_4G00321010 Rroxscaffold_6G00395830 Rroxscaffold_6G00395840
rosa_rugosa	Rorug03G0224700
rosa_wichuraiana	Rw3G024380 Rw3G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	1 cut(s)	122
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	3 cut(s)	29, 557, 679
AcuI	CTGAAG	2 cut(s)	327, 736
AfaI	GTAC	2 cut(s)	12, 477
AgsI	TTSAA	2 cut(s)	226, 620
AhlI	ACTAGT	1 cut(s)	547
AluBI	AGCT	4 cut(s)	101, 276, 511, 783
AluI	AGCT	4 cut(s)	101, 276, 511, 783
Alw21I	GWGCWC	1 cut(s)	588
AlwNI	CAGNNNCTG	1 cut(s)	833
Ama87I	CYCGRG	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	55, 176
ApoI	RAATTY	3 cut(s)	29, 557, 679
AspLEI	GCGC	1 cut(s)	650
AsuHPI	GGTGA	1 cut(s)	481
AsuNHI	GCTAGC	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	434
BarI	GAAGNNNNNNTAC	2 cut(s)	528, 560
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	67, 163
BccI	CCATC	1 cut(s)	830
BclI	TGATCA	1 cut(s)	451
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	4 cut(s)	36, 42, 264, 548
BisI	GCNGC	2 cut(s)	56, 177
BlsI	GCNGC	2 cut(s)	57, 178
BmeT110I	CYCGRG	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	436
BmsI	GCATC	1 cut(s)	72
BmtI	GCTAGC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	794
BsaJI	CCNNGG	2 cut(s)	352, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
BseCI	ATCGAT	1 cut(s)	794
BseDI	CCNNGG	2 cut(s)	352, 568
BseGI	GGATG	2 cut(s)	403, 710
BseRI	GAGGAG	1 cut(s)	664
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	67, 163
Bsh1236I	CGCG	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	434
BshVI	ATCGAT	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	439, 588
Bsp143I	GATC	2 cut(s)	451, 602
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	1 cut(s)	4
BspDI	ATCGAT	1 cut(s)	794
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	436
BspOI	GCTAGC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	352, 568
BssMI	GATC	2 cut(s)	451, 602
BssNAI	GTATAC	1 cut(s)	553
BssT1I	CCWWGG	2 cut(s)	352, 568
Bst1107I	GTATAC	1 cut(s)	553
Bst4CI	ACNGT	4 cut(s)	15, 376, 406, 660
BstC8I	GCNNGC	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	2 cut(s)	403, 710
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	2 cut(s)	454, 605
BstMBI	GATC	2 cut(s)	451, 602
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	67, 163
BstV2I	GAAGAC	1 cut(s)	78
BstZ17I	GTATAC	1 cut(s)	553
Bsu15I	ATCGAT	1 cut(s)	794
BsuTUI	ATCGAT	1 cut(s)	794
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	2 cut(s)	403, 710
BtsIMutI	CAGTG	2 cut(s)	411, 656
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	833
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	650
ClaI	ATCGAT	1 cut(s)	794
Csp6I	GTAC	2 cut(s)	11, 476
CspCI	CAANNNNNGTGG	2 cut(s)	757, 792
CviAII	CATG	3 cut(s)	269, 338, 569
CviJI	RGCY	8 cut(s)	39, 101, 240, 276, 511, 539, 783, 819
CviKI_1	RGCY	8 cut(s)	39, 101, 240, 276, 511, 539, 783, 819
CviQI	GTAC	2 cut(s)	11, 476
DpnI	GATC	2 cut(s)	453, 604
DpnII	GATC	2 cut(s)	451, 602
Eco130I	CCWWGG	2 cut(s)	352, 568
Eco57I	CTGAAG	2 cut(s)	327, 736
Eco88I	CYCGRG	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	557
EcoT14I	CCWWGG	2 cut(s)	352, 568
ErhI	CCWWGG	2 cut(s)	352, 568
FaeI	CATG	3 cut(s)	272, 341, 572
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	3 cut(s)	268, 337, 568
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	56, 177
FokI	GGATG	2 cut(s)	410, 717
Fsp4HI	GCNGC	2 cut(s)	56, 177
FspBI	CTAG	4 cut(s)	36, 42, 264, 548
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	2 cut(s)	56, 177
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	3 cut(s)	272, 341, 572
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HincII	GTYRAC	2 cut(s)	463, 745
HindII	GTYRAC	2 cut(s)	463, 745
HinfI	GANTC	3 cut(s)	20, 348, 791
HpaI	GTTAAC	2 cut(s)	463, 745
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	4 cut(s)	379, 463, 553, 745
Hpy188I	TCNGA	3 cut(s)	86, 727, 765
Hpy188III	TCNNGA	4 cut(s)	24, 338, 702, 823
Hpy8I	GTNNAC	4 cut(s)	379, 463, 553, 745
HpyAV	CCTTC	3 cut(s)	39, 313, 353
HpyCH4III	ACNGT	4 cut(s)	15, 376, 406, 660
HpyCH4V	TGCA	3 cut(s)	127, 185, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	272, 341, 572
HspAI	GCGC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	451
KspAI	GTTAAC	2 cut(s)	463, 745
Kzo9I	GATC	2 cut(s)	451, 602
LpnPI	CCDG	5 cut(s)	315, 408, 452, 458, 813
Lsp1109I	GCAGC	2 cut(s)	67, 163
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	4 cut(s)	36, 42, 264, 548
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	453, 604
MboI	GATC	2 cut(s)	451, 602
MboII	GAAGA	3 cut(s)	83, 320, 643
MhlI	GDGCHC	2 cut(s)	439, 588
MluCI	AATT	5 cut(s)	29, 455, 557, 620, 679
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	44, 99, 155, 276, 356, 460, 685, 830
MseI	TTAA	7 cut(s)	188, 204, 462, 623, 744, 759, 801
MslI	CAYNNNNRTG	2 cut(s)	498, 703
MspI	CCGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	451, 602
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	272, 341, 572
NlaIV	GGNNCC	1 cut(s)	436
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	20, 791
PkrI	GCNGC	2 cut(s)	57, 178
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	833
RsaI	GTAC	2 cut(s)	12, 477
RsaNI	GTAC	2 cut(s)	11, 476
RseI	CAYNNNNRTG	2 cut(s)	498, 703
SaqAI	TTAA	7 cut(s)	188, 204, 462, 623, 744, 759, 801
SatI	GCNGC	2 cut(s)	56, 177
Sau3AI	GATC	2 cut(s)	451, 602
SchI	GAGTC	1 cut(s)	357
SduI	GDGCHC	2 cut(s)	439, 588
SfaNI	GCATC	1 cut(s)	72
SmiMI	CAYNNNNRTG	2 cut(s)	498, 703
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	5 cut(s)	29, 455, 557, 620, 679
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	722
SspMI	CTAG	4 cut(s)	36, 42, 264, 548
StyI	CCWWGG	2 cut(s)	352, 568
TaaI	ACNGT	4 cut(s)	15, 376, 406, 660
TaqI	TCGA	3 cut(s)	278, 425, 794
TasI	AATT	5 cut(s)	29, 455, 557, 620, 679
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	20, 791
Tru1I	TTAA	7 cut(s)	188, 204, 462, 623, 744, 759, 801
Tru9I	TTAA	7 cut(s)	188, 204, 462, 623, 744, 759, 801
TscAI	CASTG	2 cut(s)	411, 663
TseI	GCWGC	2 cut(s)	55, 176
TspDTI	ATGAA	5 cut(s)	190, 414, 550, 581, 644
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	411, 663
XapI	RAATTY	3 cut(s)	29, 557, 679
XmiI	GTMKAC	1 cut(s)	552
XspI	CTAG	4 cut(s)	36, 42, 264, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.