RchiOBHm_Chr7g0219081

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
37326078 .. 37329333
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19609

Sequence Viewer

Length: 246 bp
ATGTTTTTGCTAGGTTCATTCGCAGCTACACCAAGGACTGAAAATTCAAGTTACAAGTATTTTTATCTTATAACAAATTGCTATTTTCTTTTTCTTTTTCTTTTTACTGTATCTACAAACCGTTTTTGTCTTCATATGGTTTATTTAAGAGACTTTAATCTTGTTCTTTTCTTTTGCTATTGTACATGGAGAAGTTTAGGCCATATGTCCCCTTCTCCCTACTCTTTGTACTGTTTTTATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.82

Weight (kDa)

8.67

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AcsI RAATTY 1 cut(s) 43
AfaI GTAC 2 cut(s) 184, 230
AgsI TTSAA 1 cut(s) 48
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 201
BslFI GGGAC 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 182
BspANI GGCC 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 109, 122, 233
BstAUI TGTACA 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 183, 229
CviAII CATG 1 cut(s) 186
CviJI RGCY 2 cut(s) 26, 201
CviKI_1 RGCY 2 cut(s) 26, 201
CviQI GTAC 2 cut(s) 183, 229
Eco130I CCWWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 1 cut(s) 189
FaiI YATR 6 cut(s) 71, 135, 137, 187, 204, 206
FaqI GGGAC 1 cut(s) 193
FatI CATG 1 cut(s) 185
FauNDI CATATG 2 cut(s) 135, 204
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 11
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 3 cut(s) 109, 122, 233
Hsp92II CATG 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 1 cut(s) 122
MluCI AATT 2 cut(s) 43, 76
MseI TTAA 2 cut(s) 146, 156
NdeI CATATG 2 cut(s) 135, 204
NlaIII CATG 1 cut(s) 189
PkrI GCNGC 1 cut(s) 25
PsiI TTATAA 1 cut(s) 71
RsaI GTAC 2 cut(s) 184, 230
RsaNI GTAC 2 cut(s) 183, 229
SaqAI TTAA 2 cut(s) 146, 156
SatI GCNGC 1 cut(s) 24
SetI ASST 2 cut(s) 16, 28
SgeI CNNG 6 cut(s) 23, 45, 60, 67, 173, 198
Sse9I AATT 2 cut(s) 43, 76
SspMI CTAG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 3 cut(s) 109, 122, 233
TasI AATT 2 cut(s) 43, 76
TatI WGTACW 2 cut(s) 182, 228
Tru1I TTAA 2 cut(s) 146, 156
Tru9I TTAA 2 cut(s) 146, 156
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 6, 122
XapI RAATTY 1 cut(s) 43
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.