Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Forward (+)

35189142 .. 35192526

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTGGAGATGCGTGCATCTCATATAGGCGAGACAACTAGAATAGGACAGAAGCTTGACTTGCCTAGTCCATTCCAAAGCTTTATAGAGGGATGTTTTGTCAATGGTGCATTCAGATTCAAGGGCATGCAAACAACAATCTTACCCTTTATAGCTCAAAATTTGTTTGGCACCAAGGAAGCTAATATATTGTGCAGGCTAGTGGTCATTCGCAATTATGACTTGAGATCCTTTGATGGTGAATCAAATGCACTAGCGCTAGTTCCTATGAATGCTGAACAATCTTTGCTCTCTATGATTGATGCATCAAAGTCCTTGAAGTGTGATAGTCATGCCACACCTTTCTCCTCTCCAAAAAAATTAAAGCTCTTGTTCGAGGGAGCGGTGCATGATACTGCCCTAATGAAGAAGGAGAGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTGGGGGTAAGCTTCGGGCTGATGCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGCTGGCCAAAGTACAGTGCCCTCCAGATACTCATTTCTGGGTGAGGGTTCGCGAAGCTCTGATTGAGCTAGATCTTTTAGCAGAGGTGTATCCTTGTCCAAAAGGTTCGATAAGACACAGAGAATTGGTTAACAGATTTGGTGGAAAAGAGCAATTCCCTTTTCTCATTGATCCAAATACCGGTATTTCAATGTATGAAAGCGGTAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

253

Amino Acids

28.31

Weight (kDa)

9.0

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	383
AccII	CGCG	1 cut(s)	600
AciI	CCGC	2 cut(s)	383, 750
AclWI	GGATC	2 cut(s)	222, 713
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	1 cut(s)	561
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	486, 728
AgeI	ACCGGT	1 cut(s)	728
AgsI	TTSAA	3 cut(s)	121, 319, 738
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	222, 713
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	1 cut(s)	552
ApoI	RAATTY	1 cut(s)	160
AsiGI	ACCGGT	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	251, 601
BaeGI	GKGCMC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	546
BccI	CCATC	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	6 cut(s)	39, 66, 200, 254, 260, 617
BfoI	RGCGCY	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	648
BglII	AGATCT	1 cut(s)	619
BmiI	GGNNCC	1 cut(s)	172
BmsI	GCATC	4 cut(s)	26, 292, 314, 466
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	244, 530
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 728
Bse118I	RCCGGY	1 cut(s)	728
Bse3DI	GCAATG	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	486, 728
BseMI	GCAATG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	569
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	486, 728
BsmAI	GTCTC	1 cut(s)	26
BsmI	GAATGC	2 cut(s)	110, 277
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	546, 569
Bsp143I	GATC	4 cut(s)	227, 519, 619, 718
Bsp68I	TCGCGA	1 cut(s)	600
BspACI	CCGC	2 cut(s)	383, 750
BspANI	GGCC	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	222, 713
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	728
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	4 cut(s)	227, 519, 619, 718
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	564
BstC8I	GCNNGC	5 cut(s)	15, 128, 197, 481, 552
BstDEI	CTNAG	1 cut(s)	536
BstF5I	GGATG	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	600
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	230, 522, 622, 721
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	4 cut(s)	227, 519, 619, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 541
BstNSI	RCATGY	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	569
BstUI	CGCG	1 cut(s)	600
BstX2I	RGATCY	2 cut(s)	227, 619
BstYI	RGATCY	2 cut(s)	227, 619
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	569
BtuMI	TCGCGA	1 cut(s)	600
Cac8I	GCNNGC	5 cut(s)	15, 128, 197, 481, 552
CciI	TCATGA	1 cut(s)	504
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	560
CspAI	ACCGGT	1 cut(s)	728
CviAII	CATG	4 cut(s)	127, 332, 389, 505
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	4 cut(s)	229, 521, 621, 720
DpnII	GATC	4 cut(s)	227, 519, 619, 718
EaeI	YGGCCR	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	174
Eco47III	AGCGCT	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	130, 335, 392, 508
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	4 cut(s)	126, 331, 388, 504
FokI	GGATG	1 cut(s)	105
FspBI	CTAG	6 cut(s)	39, 66, 200, 254, 260, 617
GlaI	GCGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	729
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	4 cut(s)	130, 335, 392, 508
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	3 cut(s)	53, 79, 464
HinfI	GANTC	2 cut(s)	117, 242
HpaI	GTTAAC	1 cut(s)	679
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	2 cut(s)	251, 601
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	3 cut(s)	116, 444, 609
Hpy188III	TCNNGA	3 cut(s)	505, 572, 599
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4V	TGCA	7 cut(s)	17, 110, 130, 195, 251, 305, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 541
HpyF3I	CTNAG	1 cut(s)	536
Hsp92II	CATG	4 cut(s)	130, 335, 392, 508
HspAI	GCGC	1 cut(s)	257
KspAI	GTTAAC	1 cut(s)	679
Kzo9I	GATC	4 cut(s)	227, 519, 619, 718
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	7 cut(s)	181, 438, 493, 536, 571, 585, 742
LweI	GCATC	4 cut(s)	26, 292, 314, 466
MaeI	CTAG	6 cut(s)	39, 66, 200, 254, 260, 617
MalI	GATC	4 cut(s)	229, 521, 621, 720
MbiI	CCGCTC	1 cut(s)	383
MboI	GATC	4 cut(s)	227, 519, 619, 718
MboII	GAAGA	1 cut(s)	418
MflI	RGATCY	2 cut(s)	227, 619
MhlI	GDGCHC	2 cut(s)	546, 569
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	5 cut(s)	160, 214, 359, 671, 701
MluNI	TGGCCA	1 cut(s)	554
MnlI	CCTC	6 cut(s)	82, 358, 370, 579, 585, 625
Mox20I	TGGCCA	1 cut(s)	554
Mph1103I	ATGCAT	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	2 cut(s)	362, 678
Msp20I	TGGCCA	1 cut(s)	554
MspI	CCGG	1 cut(s)	729
Mva1269I	GAATGC	2 cut(s)	110, 277
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	61, 541
NdeII	GATC	4 cut(s)	227, 519, 619, 718
NlaIII	CATG	4 cut(s)	130, 335, 392, 508
NlaIV	GGNNCC	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	600
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	130
PaeI	GCATGC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	504
PctI	GAATGC	2 cut(s)	110, 277
PfeI	GAWTC	2 cut(s)	117, 242
PinAI	ACCGGT	1 cut(s)	728
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	227, 619
RruI	TCGCGA	1 cut(s)	600
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
SaqAI	TTAA	2 cut(s)	362, 678
Sau3AI	GATC	4 cut(s)	227, 519, 619, 718
SduI	GDGCHC	2 cut(s)	546, 569
SfaNI	GCATC	4 cut(s)	26, 292, 314, 466
SmlI	CTYRAG	2 cut(s)	223, 545
SmoI	CTYRAG	2 cut(s)	223, 545
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	5 cut(s)	160, 214, 359, 671, 701
SsiI	CCGC	2 cut(s)	383, 750
SspMI	CTAG	6 cut(s)	39, 66, 200, 254, 260, 617
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	375, 656
TasI	AATT	5 cut(s)	160, 214, 359, 671, 701
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	2 cut(s)	117, 242
Tru1I	TTAA	2 cut(s)	362, 678
Tru9I	TTAA	2 cut(s)	362, 678
TscAI	CASTG	1 cut(s)	569
TspDTI	ATGAA	5 cut(s)	284, 419, 493, 521, 759
TspRI	CASTG	1 cut(s)	569
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	6 cut(s)	39, 66, 200, 254, 260, 617
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.