Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Reverse (-)

38545657 .. 38549870

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG229600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGTGCAACAGGCGACGGAGTTCCTGGATTGGTGGCGGCGGTGGATGCGGTCGGTGTCCGGGGACCCAGGATTCAGGGCACTTACCGAGGCAAGCAACTCTACATCAAGCACAGGTCGACTTCACGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAATTGAATGTTGGGGGTAAGCTTCCGGCTGATGCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGCTGGCCAAAGTGCAGTGCCCTCCAGATACTCATTTTTGGGTGTATGAAGATGGTACATATGAGGAGGAAGGGCAGAATAACATTAAAGGAAACATATGGGGAAAGGCATCCACCCGTTTCATTTGTTCATTATTCTCATTGCCTGTACCATCTCGTAATCAAAATGGGGCAATAGAAGATCCTATGACACAACCTTCAAGTAGGTCCATCCCTGAATACTTGGATAGGCAAGAGTTCAAAAACTTTTGTTATTTGGTCTGGAGGGATCTGGAACTAGCACCATCTTCAAGCAGGCCAAGTTCTTATATGGGAACGAGTTCACTCCCAAGGAGGTGCAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

202

Amino Acids

22.89

Weight (kDa)

8.28

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	3 cut(s)	37, 40, 49
AclWI	GGATC	2 cut(s)	437, 537
AcoI	YGGCCR	1 cut(s)	267
AfaI	GTAC	2 cut(s)	319, 411
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	4 cut(s)	166, 462, 502, 552
AjnI	CCWGG	2 cut(s)	24, 67
AluBI	AGCT	3 cut(s)	181, 250, 265
AluI	AGCT	3 cut(s)	181, 250, 265
Alw21I	GWGCWC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	437, 537
AoxI	GGCC	2 cut(s)	267, 557
Asp700I	GAANNNNTTC	1 cut(s)	580
AspS9I	GGNCC	2 cut(s)	64, 468
AsuC2I	CCSGG	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	64, 468
BaeGI	GKGCMC	2 cut(s)	82, 284
BalI	TGGCCA	1 cut(s)	269
BauI	CACGAG	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	261
BccI	CCATC	4 cut(s)	308, 421, 479, 553
BciT130I	CCWGG	2 cut(s)	26, 69
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	539
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	3 cut(s)	26, 61, 69
Bme18I	GGWCC	2 cut(s)	64, 468
BmgT120I	GGNCC	2 cut(s)	64, 468
BmiI	GGNNCC	2 cut(s)	65, 66
BmrFI	CCNGG	3 cut(s)	26, 61, 69
BmsI	GCATC	3 cut(s)	36, 181, 380
BpmI	CTGGAG	2 cut(s)	270, 544
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	4 cut(s)	60, 67, 87, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse3DI	GCAATG	2 cut(s)	205, 401
BseBI	CCWGG	2 cut(s)	26, 69
BseDI	CCNNGG	4 cut(s)	60, 67, 87, 590
BseGI	GGATG	3 cut(s)	51, 371, 471
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	2 cut(s)	205, 401
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	2 cut(s)	82, 284
BsgI	GTGCAG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	269, 559
BsiEI	CGRYCG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	60, 185
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	269, 559
Bsp1286I	GDGCHC	3 cut(s)	82, 261, 284
Bsp143I	GATC	3 cut(s)	234, 442, 529
BspACI	CCGC	3 cut(s)	37, 40, 49
BspANI	GGCC	2 cut(s)	269, 559
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	65, 66
BspPI	GGATC	2 cut(s)	437, 537
BsrDI	GCAATG	2 cut(s)	205, 401
BssECI	CCNNGG	4 cut(s)	60, 67, 87, 590
BssMI	GATC	3 cut(s)	234, 442, 529
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	590
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	26, 69
BstC8I	GCNNGC	4 cut(s)	94, 196, 267, 557
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	3 cut(s)	51, 371, 471
BstKTI	GATC	3 cut(s)	237, 445, 532
BstMBI	GATC	3 cut(s)	234, 442, 529
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 256
BstNI	CCWGG	2 cut(s)	26, 69
BstSCI	CCNGG	3 cut(s)	24, 59, 67
BstSLI	GKGCMC	2 cut(s)	82, 284
BstX2I	RGATCY	2 cut(s)	442, 529
BstYI	RGATCY	2 cut(s)	442, 529
BsuRI	GGCC	2 cut(s)	269, 559
BtsCI	GGATG	3 cut(s)	51, 371, 471
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	4 cut(s)	94, 196, 267, 557
CciI	TCATGA	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	64, 468
Csp6I	GTAC	2 cut(s)	318, 410
CviAII	CATG	2 cut(s)	220, 606
CviJI	RGCY	7 cut(s)	139, 181, 188, 250, 265, 269, 559
CviKI_1	RGCY	7 cut(s)	139, 181, 188, 250, 265, 269, 559
CviQI	GTAC	2 cut(s)	318, 410
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	236, 444, 531
DpnII	GATC	3 cut(s)	234, 442, 529
EaeI	YGGCCR	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	590
Eco47I	GGWCC	2 cut(s)	64, 468
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	24, 67
EcoT14I	CCWWGG	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	590
FaeI	CATG	2 cut(s)	223, 609
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	2 cut(s)	219, 605
FauNDI	CATATG	2 cut(s)	322, 359
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	3 cut(s)	58, 358, 458
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	539
GluI	GCNGC	1 cut(s)	38
GsuI	CTGGAG	2 cut(s)	270, 544
HaeIII	GGCC	2 cut(s)	269, 559
HapII	CCGG	2 cut(s)	60, 185
Hin1II	CATG	2 cut(s)	223, 609
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	2 cut(s)	60, 185
Hpy166II	GTNNAC	2 cut(s)	119, 584
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	5 cut(s)	125, 220, 287, 523, 533
Hpy8I	GTNNAC	2 cut(s)	119, 584
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	326, 468
HpyCH4V	TGCA	3 cut(s)	7, 277, 600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 256
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	223, 609
KflI	GGGWCCC	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	234, 442, 529
LweI	GCATC	3 cut(s)	36, 181, 380
MaeI	CTAG	1 cut(s)	539
MalI	GATC	3 cut(s)	236, 444, 531
MboI	GATC	3 cut(s)	234, 442, 529
MboII	GAAGA	3 cut(s)	323, 452, 540
MflI	RGATCY	2 cut(s)	442, 529
MhlI	GDGCHC	3 cut(s)	82, 261, 284
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	269
MnlI	CCTC	7 cut(s)	82, 121, 294, 319, 322, 519, 588
Mox20I	TGGCCA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	2 cut(s)	60, 185
MspR9I	CCNGG	3 cut(s)	26, 61, 69
MvaI	CCWGG	2 cut(s)	26, 69
MwoI	GCNNNNNNNGC	2 cut(s)	46, 256
NciI	CCSGG	1 cut(s)	61
NdeI	CATATG	2 cut(s)	322, 359
NdeII	GATC	3 cut(s)	234, 442, 529
NlaIII	CATG	2 cut(s)	223, 609
NlaIV	GGNNCC	2 cut(s)	65, 66
PagI	TCATGA	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	72
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	2 cut(s)	24, 67
PspGI	CCWGG	2 cut(s)	24, 67
PspN4I	GGNNCC	2 cut(s)	65, 66
PspPI	GGNCC	2 cut(s)	64, 468
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	442, 529
RsaI	GTAC	2 cut(s)	319, 411
RsaNI	GTAC	2 cut(s)	318, 410
SalI	GTCGAC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	3 cut(s)	234, 442, 529
Sau96I	GGNCC	2 cut(s)	64, 468
ScrFI	CCNGG	3 cut(s)	26, 61, 69
SduI	GDGCHC	3 cut(s)	82, 261, 284
SetI	ASST	7 cut(s)	118, 183, 252, 267, 460, 470, 599
SfaNI	GCATC	3 cut(s)	36, 181, 380
SinI	GGWCC	2 cut(s)	64, 468
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	37, 40, 49
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	3 cut(s)	24, 59, 67
StyI	CCWWGG	1 cut(s)	590
TaqI	TCGA	1 cut(s)	118
TasI	AATT	1 cut(s)	161
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	208, 236, 324, 373, 381
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	64, 468
XmiI	GTMKAC	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	580
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.