Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001829.1

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Forward (+)

78492 .. 80472

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001829.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgactggtgtcggtcccattcttgcactgctgagccggctacatctggcgctctactattgttcgctccatgctgggttagcgtttgcttctagcgccttctttaggtcgccaaattttgacatcaatgtggccacttgcttctgggcttctgccttttcccttctctccatctctcgctctttgtttgccttatggagatctgctagtgccaactttaatttggcagcaagatcttgtcctggtgactggtggctactgccaagcatatttccactgctgactgggtgtacggcagtagaggagtatattggggttcgacgccggggttcaccgggtatagaagagtgtgcggctgacggcagccgcagggttggtggcttgggtttggcggatttgtccgcttgctctttggcaacttcccctttacagttagtcatggtagattatgataggatgaacttttgttcaagaattcccaaaaacggcgccaatccgaagccggagctgcgttcgccgttctcctttctctctctgtgggcctccccctctcagcctctctctcctcgactcaaagctgaaaactttctgggttttcatacgaacagcctcaaactcgatgtcttggagggagagaagcctgattgtatcattactccgaaactgaatgttgggggtaagcttcgggctgatgccagcaatgggaacactaatgtattcatgaatggcagagagatcacaaagattgagcttagggtgcggggtgctcaagctggccaaagtacagtgccctccagatactcatttatgggtgttgaagatgaattgtcaaagttggagcaggtcaagtcaattaagctcaaagagatccttctgaaaaagaagttggaactggaggaggtatgtagacagtctcacatggttacagaaatactgagtgctgcagaatactcaaatgaagctatagaggcctgcccttcaaacaagatcaaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

332

Amino Acids

36.31

Weight (kDa)

8.77

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	832
AccB1I	GGYRCC	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	907
AciI	CCGC	5 cut(s)	353, 367, 392, 402, 760
AclWI	GGATC	1 cut(s)	862
AcoI	YGGCCR	2 cut(s)	132, 775
AcsI	RAATTY	2 cut(s)	115, 474
AcyI	GRCGYC	2 cut(s)	322, 489
AfaI	GTAC	2 cut(s)	292, 784
AfiI	CCNNNNNNNGG	3 cut(s)	105, 485, 702
AgsI	TTSAA	3 cut(s)	471, 818, 981
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	869, 901
AluBI	AGCT	7 cut(s)	508, 578, 682, 751, 773, 859, 962
AluI	AGCT	7 cut(s)	508, 578, 682, 751, 773, 859, 962
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	1 cut(s)	918
AlwI	GGATC	1 cut(s)	862
AoxI	GGCC	4 cut(s)	132, 540, 775, 969
ApeKI	GCWGC	4 cut(s)	227, 363, 508, 941
ApoI	RAATTY	2 cut(s)	115, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	606, 638
Asp700I	GAANNNNTTC	1 cut(s)	585
AspLEI	GCGC	3 cut(s)	52, 98, 491
AspS9I	GGNCC	2 cut(s)	14, 540
AsuC2I	CCSGG	2 cut(s)	326, 336
AsuHPI	GGTGA	2 cut(s)	257, 324
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	792
BalI	TGGCCA	2 cut(s)	134, 777
BanI	GGYRCC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	4 cut(s)	239, 375, 495, 928
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	4 cut(s)	309, 376, 502, 502
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	326, 336
BcoDI	GTCTC	1 cut(s)	918
BfaI	CTAG	2 cut(s)	93, 207
BfmI	CTRYAG	2 cut(s)	942, 963
BfoI	RGCGCY	3 cut(s)	53, 99, 492
BfuAI	ACCTGC	1 cut(s)	832
BglII	AGATCT	2 cut(s)	200, 233
BisI	GCNGC	6 cut(s)	228, 354, 364, 367, 509, 942
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	6 cut(s)	229, 355, 365, 368, 510, 943
Bme1390I	CCNGG	3 cut(s)	243, 326, 336
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	14, 540
BmiI	GGNNCC	2 cut(s)	16, 490
BmrFI	CCNGG	3 cut(s)	243, 326, 336
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	682
BmuI	ACTGGG	1 cut(s)	294
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	2 cut(s)	778, 914
Bpu10I	CCTNAGC	1 cut(s)	752
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	753
BpuMI	CCSGG	2 cut(s)	326, 336
BsaHI	GRCGYC	2 cut(s)	322, 489
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 485, 702
Bse118I	RCCGGY	1 cut(s)	36
Bse1I	ACTGG	4 cut(s)	10, 254, 289, 897
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	3 cut(s)	105, 485, 702
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	3 cut(s)	23, 566, 926
BseNI	ACTGG	4 cut(s)	10, 254, 289, 897
BseRI	GAGGAG	3 cut(s)	317, 555, 911
BseSI	GKGCMC	1 cut(s)	792
BseXI	GCAGC	4 cut(s)	239, 375, 495, 928
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	4 cut(s)	134, 542, 777, 971
BshNI	GGYRCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	4 cut(s)	37, 325, 335, 503
BslI	CCNNNNNNNGG	3 cut(s)	105, 485, 702
BsmAI	GTCTC	1 cut(s)	918
BsnI	GGCC	4 cut(s)	134, 542, 777, 971
Bsp1286I	GDGCHC	2 cut(s)	769, 792
Bsp143I	GATC	5 cut(s)	200, 233, 735, 867, 987
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	5 cut(s)	353, 367, 392, 402, 760
BspANI	GGCC	4 cut(s)	134, 542, 777, 971
BspCNI	CTCAG	3 cut(s)	24, 565, 927
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	2 cut(s)	16, 490
BspMAI	CTGCAG	1 cut(s)	946
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	1 cut(s)	862
BspT107I	GGYRCC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	36
BsrI	ACTGG	4 cut(s)	10, 254, 289, 897
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	5 cut(s)	200, 233, 735, 867, 987
BssNI	GRCGYC	2 cut(s)	322, 489
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	432, 787, 912
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	2 cut(s)	322, 489
BstC8I	GCNNGC	5 cut(s)	38, 406, 697, 775, 973
BstDEI	CTNAG	4 cut(s)	32, 552, 752, 935
BstENI	CCTNNNNNAGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	462
BstH2I	RGCGCY	3 cut(s)	53, 99, 492
BstHHI	GCGC	3 cut(s)	52, 98, 491
BstKTI	GATC	5 cut(s)	203, 236, 738, 870, 990
BstMAI	GTCTC	1 cut(s)	918
BstMBI	GATC	5 cut(s)	200, 233, 735, 867, 987
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 80, 95, 508, 514, 757, 968
BstNI	CCWGG	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	241, 324, 334
BstSFI	CTRYAG	2 cut(s)	942, 963
BstSLI	GKGCMC	1 cut(s)	792
BstV1I	GCAGC	4 cut(s)	239, 375, 495, 928
BstX2I	RGATCY	3 cut(s)	200, 233, 867
BstYI	RGATCY	3 cut(s)	200, 233, 867
BsuRI	GGCC	4 cut(s)	134, 542, 777, 971
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	2 cut(s)	26, 275
BtsIMutI	CAGTG	3 cut(s)	26, 275, 792
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	5 cut(s)	38, 406, 697, 775, 973
CciI	TCATGA	1 cut(s)	720
CfoI	GCGC	3 cut(s)	52, 98, 491
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	14, 540
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	291, 783
CviAII	CATG	4 cut(s)	71, 439, 721, 919
CviQI	GTAC	2 cut(s)	291, 783
DdeI	CTNAG	4 cut(s)	32, 552, 752, 935
DinI	GGCGCC	1 cut(s)	490
DpnI	GATC	5 cut(s)	202, 235, 737, 869, 989
DpnII	GATC	5 cut(s)	200, 233, 735, 867, 987
EaeI	YGGCCR	2 cut(s)	132, 775
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	407
Eco147I	AGGCCT	1 cut(s)	971
Eco47I	GGWCC	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	490
EheI	GGCGCC	1 cut(s)	490
FaeI	CATG	4 cut(s)	74, 442, 724, 922
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FatI	CATG	4 cut(s)	70, 438, 720, 918
FauI	CCCGC	1 cut(s)	753
FblI	GTMKAC	1 cut(s)	907
Fnu4HI	GCNGC	6 cut(s)	228, 354, 364, 367, 509, 942
FokI	GGATG	1 cut(s)	469
Fsp4HI	GCNGC	6 cut(s)	228, 354, 364, 367, 509, 942
FspBI	CTAG	2 cut(s)	93, 207
GlaI	GCGC	3 cut(s)	51, 97, 490
GluI	GCNGC	6 cut(s)	228, 354, 364, 367, 509, 942
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	778, 914
HaeII	RGCGCY	3 cut(s)	53, 99, 492
HaeIII	GGCC	4 cut(s)	134, 542, 777, 971
HapII	CCGG	4 cut(s)	37, 325, 335, 503
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	3 cut(s)	52, 98, 491
Hin1I	GRCGYC	2 cut(s)	322, 489
Hin1II	CATG	4 cut(s)	74, 442, 724, 922
Hin6I	GCGC	3 cut(s)	50, 96, 489
HinP1I	GCGC	3 cut(s)	50, 96, 489
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	1 cut(s)	570
HpaII	CCGG	4 cut(s)	37, 325, 335, 503
HphI	GGTGA	2 cut(s)	257, 324
Hpy166II	GTNNAC	3 cut(s)	291, 332, 908
Hpy188I	TCNGA	3 cut(s)	498, 660, 876
Hpy188III	TCNNGA	3 cut(s)	471, 721, 795
Hpy8I	GTNNAC	3 cut(s)	291, 332, 908
Hpy99I	CGWCG	1 cut(s)	324
HpyAV	CCTTC	4 cut(s)	109, 173, 881, 987
HpyCH4III	ACNGT	3 cut(s)	432, 787, 912
HpyCH4V	TGCA	2 cut(s)	26, 944
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 80, 95, 508, 514, 757, 968
HpyF3I	CTNAG	4 cut(s)	32, 552, 752, 935
Hsp92I	GRCGYC	2 cut(s)	322, 489
Hsp92II	CATG	4 cut(s)	74, 442, 724, 922
HspAI	GCGC	3 cut(s)	50, 96, 489
KasI	GGCGCC	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	36
KroNI	GCCGGC	1 cut(s)	38
Kzo9I	GATC	5 cut(s)	200, 233, 735, 867, 987
LmnI	GCTCC	3 cut(s)	72, 505, 838
Lsp1109I	GCAGC	4 cut(s)	239, 375, 495, 928
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	2 cut(s)	93, 207
MaeIII	GTNAC	2 cut(s)	245, 922
MalI	GATC	5 cut(s)	202, 235, 737, 869, 989
MboI	GATC	5 cut(s)	200, 233, 735, 867, 987
MboII	GAAGA	2 cut(s)	356, 830
MflI	RGATCY	3 cut(s)	200, 233, 867
MhlI	GDGCHC	2 cut(s)	769, 792
MlsI	TGGCCA	2 cut(s)	134, 777
MluCI	AATT	5 cut(s)	115, 220, 474, 824, 852
MluNI	TGGCCA	2 cut(s)	134, 777
Mly113I	GGCGCC	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	564
MmeI	TCCRAC	2 cut(s)	816, 867
Mox20I	TGGCCA	2 cut(s)	134, 777
MroNI	GCCGGC	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	585
MscI	TGGCCA	2 cut(s)	134, 777
MseI	TTAA	2 cut(s)	219, 855
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	2 cut(s)	134, 777
MspI	CCGG	4 cut(s)	37, 325, 335, 503
MspR9I	CCNGG	3 cut(s)	243, 326, 336
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	7 cut(s)	37, 80, 95, 508, 514, 757, 968
NaeI	GCCGGC	1 cut(s)	38
NarI	GGCGCC	1 cut(s)	489
NciI	CCSGG	2 cut(s)	326, 336
NdeII	GATC	5 cut(s)	200, 233, 735, 867, 987
NgoMIV	GCCGGC	1 cut(s)	36
NlaIII	CATG	4 cut(s)	74, 442, 724, 922
NlaIV	GGNNCC	2 cut(s)	16, 490
NmuCI	GTSAC	1 cut(s)	245
PagI	TCATGA	1 cut(s)	720
PceI	AGGCCT	1 cut(s)	971
PdiI	GCCGGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	585
PkrI	GCNGC	6 cut(s)	229, 355, 365, 368, 510, 943
PleI	GAGTC	1 cut(s)	564
PluTI	GGCGCC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	564
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	16, 490
PspPI	GGNCC	2 cut(s)	14, 540
PstI	CTGCAG	1 cut(s)	946
PsuI	RGATCY	3 cut(s)	200, 233, 867
RsaI	GTAC	2 cut(s)	292, 784
RsaNI	GTAC	2 cut(s)	291, 783
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	219, 855
SatI	GCNGC	6 cut(s)	228, 354, 364, 367, 509, 942
Sau3AI	GATC	5 cut(s)	200, 233, 735, 867, 987
Sau96I	GGNCC	2 cut(s)	14, 540
SchI	GAGTC	1 cut(s)	564
ScrFI	CCNGG	3 cut(s)	243, 326, 336
SduI	GDGCHC	2 cut(s)	769, 792
SfaNI	GCATC	1 cut(s)	682
SfcI	CTRYAG	2 cut(s)	942, 963
SfoI	GGCGCC	1 cut(s)	490
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	768
SmoI	CTYRAG	1 cut(s)	768
Sse9I	AATT	5 cut(s)	115, 220, 474, 824, 852
SseBI	AGGCCT	1 cut(s)	971
SsiI	CCGC	5 cut(s)	353, 367, 392, 402, 760
SspDI	GGCGCC	1 cut(s)	488
SspMI	CTAG	2 cut(s)	93, 207
StuI	AGGCCT	1 cut(s)	971
StyD4I	CCNGG	3 cut(s)	241, 324, 334
TaaI	ACNGT	3 cut(s)	432, 787, 912
TaqI	TCGA	3 cut(s)	319, 568, 618
TasI	AATT	5 cut(s)	115, 220, 474, 824, 852
TatI	WGTACW	1 cut(s)	782
TauI	GCSGC	2 cut(s)	356, 369
Tru1I	TTAA	2 cut(s)	219, 855
Tru9I	TTAA	2 cut(s)	219, 855
TscAI	CASTG	3 cut(s)	33, 282, 792
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	4 cut(s)	227, 363, 508, 941
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	6 cut(s)	473, 587, 709, 737, 837, 972
TspRI	CASTG	3 cut(s)	33, 282, 792
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	103
XapI	RAATTY	2 cut(s)	115, 474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	907
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	2 cut(s)	93, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.