Rh5AG283800

Extra-large guanine nucleotide-binding protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003489
Physical Location & Seq
Reverse (-)
38447246 .. 38449311
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG283800.1

Sequence Viewer

Length: 402 bp
ATGTCTTGGGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTGGGGGTAAGCTTCGGGCTGATGCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGCTGGCCAAAATCCAAAGGTGCACTGGTGCTGTGGTGATAACAAGGGGCAAGTATCATCCACCAAATGCGTCAACTGATGGTGAAAAGCCATTATATCTTCATATTTCTGCAGGGGCTAATTTCATTGGATCCCAAGTACCGTTCCTTCCCTCGGTCGAAGTTTCAGTGAAGGCTTTACTTGGTATATCATCAGCAGCTCTACCTGCAGCTCCAAGTGCATTAATGCGAATTTTATTCCGTGGACATCATCCATAG

Protein Analysis

133

Amino Acids

14.24

Weight (kDa)

9.8

Isoelectric Point (pI)

25.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_12 PF23469 52 - 90 1.1e-12 KH-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AclWI GGATC 2 cut(s) 270, 283
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 84, 298
AluBI AGCT 5 cut(s) 64, 133, 148, 344, 356
AluI AGCT 5 cut(s) 64, 133, 148, 344, 356
Alw21I GWGCWC 2 cut(s) 144, 170
Alw44I GTGCAC 1 cut(s) 166
AlwI GGATC 2 cut(s) 270, 283
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 341, 353
ApoI RAATTY 1 cut(s) 375
AseI ATTAAT 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 193, 239
BaeGI GKGCMC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 152
BamHI GGATCC 1 cut(s) 275
BarI GAAGNNNNNNTAC 2 cut(s) 276, 308
Bbv12I GWGCWC 2 cut(s) 144, 170
BbvI GCAGC 2 cut(s) 353, 365
BccI CCATC 1 cut(s) 218
BfmI CTRYAG 2 cut(s) 255, 351
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 2 cut(s) 342, 354
BlsI GCNGC 2 cut(s) 343, 355
BmiI GGNNCC 1 cut(s) 277
BmsI GCATC 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 297, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 298
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 297, 385
BseGI GGATG 2 cut(s) 202, 394
BseLI CCNNNNNNNGG 2 cut(s) 84, 298
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 2 cut(s) 353, 365
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 2 cut(s) 144, 170
BslI CCNNNNNNNGG 2 cut(s) 84, 298
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 144, 170
Bsp143I GATC 2 cut(s) 117, 275
BspANI GGCC 1 cut(s) 152
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 277
BspMAI CTGCAG 2 cut(s) 259, 355
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 2 cut(s) 270, 283
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 297, 385
BssMI GATC 2 cut(s) 117, 275
Bst4CI ACNGT 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 79, 150
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 2 cut(s) 202, 394
BstKTI GATC 2 cut(s) 120, 278
BstMBI GATC 2 cut(s) 117, 275
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 139, 350, 362
BstSFI CTRYAG 2 cut(s) 255, 351
BstSLI GKGCMC 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 353, 365
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 2 cut(s) 202, 394
BtsIMutI CAGTG 2 cut(s) 168, 318
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 79, 150
CciI TCATGA 1 cut(s) 102
CseI GACGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 284
CviAII CATG 1 cut(s) 103
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 1 cut(s) 134
DpnI GATC 2 cut(s) 119, 277
DpnII GATC 2 cut(s) 117, 275
EaeI YGGCCR 1 cut(s) 150
FaeI CATG 1 cut(s) 106
FaiI YATR 5 cut(s) 104, 241, 249, 332, 400
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 342, 354
FokI GGATG 2 cut(s) 189, 381
Fsp4HI GCNGC 2 cut(s) 342, 354
GluI GCNGC 2 cut(s) 342, 354
HaeIII GGCC 1 cut(s) 152
HgaI GACGC 1 cut(s) 204
Hin1II CATG 1 cut(s) 106
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 62
HphI GGTGA 2 cut(s) 193, 239
Hpy166II GTNNAC 3 cut(s) 168, 219, 389
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 3 cut(s) 168, 219, 389
HpyAV CCTTC 2 cut(s) 302, 310
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 168, 257, 353, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 350, 362
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 2 cut(s) 117, 275
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 6 cut(s) 36, 91, 134, 156, 243, 363
Lsp1109I GCAGC 2 cut(s) 353, 365
LweI GCATC 1 cut(s) 64
MalI GATC 2 cut(s) 119, 277
MboI GATC 2 cut(s) 117, 275
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 144, 170
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 2 cut(s) 265, 375
MluNI TGGCCA 1 cut(s) 152
MnlI CCTC 2 cut(s) 4, 307
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 368
Msp20I TGGCCA 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 139, 350, 362
NdeII GATC 2 cut(s) 117, 275
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 277
PagI TCATGA 1 cut(s) 102
PkrI GCNGC 2 cut(s) 343, 355
PshBI ATTAAT 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 277
PstI CTGCAG 2 cut(s) 259, 355
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 2 cut(s) 342, 354
Sau3AI GATC 2 cut(s) 117, 275
SduI GDGCHC 2 cut(s) 144, 170
SetI ASST 7 cut(s) 66, 135, 150, 167, 346, 352, 358
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 255, 351
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 2 cut(s) 265, 375
TaaI ACNGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 303
TaqII GACCGA 1 cut(s) 289
TasI AATT 2 cut(s) 265, 375
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 2 cut(s) 175, 318
TseI GCWGC 2 cut(s) 341, 353
TspDTI ATGAA 4 cut(s) 91, 119, 236, 259
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 2 cut(s) 175, 318
VneI GTGCAC 1 cut(s) 166
VspI ATTAAT 1 cut(s) 368
XapI RAATTY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.