Rorug06G0069600

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
9264408 .. 9268668
4261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0069600.1

Sequence Viewer

Length: 258 bp
ATGGGAACTGGTATTGGTACCCTTTTGGCAAACTGTGATGATCTCAAAATATTTCAAGACTCTGGTATTGCTTCAGTTGCCAAGCAACTAGATCAAGACTTTAGCTTGTTATCTGTCTATTTAGTGAACCAGAATTACTTCAAAGTTAGAGAGAAGGGGTTAGAATGGCATTGTGAGAAGTATAACAGACCATTGTGGACAATCACTGCGTTAGAATGGCATTATGTGGTAAGTCACTTTGTCATTATAGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.75

Weight (kDa)

5.8

Isoelectric Point (pI)

17.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 19
AgsI TTSAA 2 cut(s) 56, 142
AluBI AGCT 2 cut(s) 105, 251
AluI AGCT 2 cut(s) 105, 251
Asp700I GAANNNNTTC 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 17
BfaI CTAG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 40, 91
BspLI GGNNCC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 13
BssMI GATC 2 cut(s) 40, 91
Bst4CI ACNGT 1 cut(s) 35
BstKTI GATC 2 cut(s) 43, 94
BstMBI GATC 2 cut(s) 40, 91
BstMWI GCNNNNNNNGC 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Csp6I GTAC 1 cut(s) 18
CviJI RGCY 2 cut(s) 105, 251
CviKI_1 RGCY 2 cut(s) 105, 251
CviQI GTAC 1 cut(s) 18
DpnI GATC 2 cut(s) 42, 93
DpnII GATC 2 cut(s) 40, 91
Eco57I CTGAAG 1 cut(s) 57
FaiI YATR 3 cut(s) 183, 225, 248
FspBI CTAG 1 cut(s) 89
HinfI GANTC 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 127, 198
Hpy188III TCNNGA 2 cut(s) 56, 95
Hpy8I GTNNAC 2 cut(s) 127, 198
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
KpnI GGTACC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 40, 91
LpnPI CCDG 2 cut(s) 48, 143
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 42, 93
MboI GATC 2 cut(s) 40, 91
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 2 cut(s) 40, 91
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 19
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 256
Sau3AI GATC 2 cut(s) 40, 91
SchI GAGTC 1 cut(s) 53
SetI ASST 2 cut(s) 107, 253
SgeI CNNG 8 cut(s) 21, 68, 75, 94, 101, 107, 118, 142
Sse9I AATT 1 cut(s) 133
SspI AATATT 1 cut(s) 51
SspMI CTAG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 35
TasI AATT 1 cut(s) 133
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspRI CASTG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.