Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002180.1

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Reverse (-)

45444 .. 47795

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002180.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgaagaatggtgaggatgcccttttcaccaattatcctgagatgccttatgatgcgtcgggatcttccccaaccatttctccaaatgccccgttgcagtttggtgttgaattgctatcgtggaccagtggagccaaattttcactccctcccaacacttggtcagatttcaccccagactcattcccaaacctaaccaccgcgacaaaaaccagccaccgacctcctcttcctccttctcctcctccaatcgctctcctcctccttctctgcctcattctctcccatccagcccaagccagagctgagttcgccgttctcctttctctctttgtgggcctcccctctcagcccctctcttcgaccgtcgactcgtcgaggcgtctacggcctctctctcctcgactatctatctctgatgaacaactccttgaatttctaggttttcaaacgaactgccttaaacttgatcttggtgctctcttcctcggagcaaagctgaaaactttctgggttttcatacaaacagcctcaaactcgatgtcttgggtcttacctcctaagaagttgaagcctgggaggtactggtacgataaggattcgggcctctggggaaaggagggagagaagtctgattgtatcattactccgaaactgaatgttgggggtaagcttcgggctgatgccagcaatgggaatactaatgtattcatgaatggcagagagatcacaaagattaagcttagggtgctcaagtgccctccagatactcatttctgggtgtatgaagatggtacatatgaagaggaagggcagaataacattaaaggaaacatatgggaaaaggttctctcgtaccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

287

Amino Acids

31.88

Weight (kDa)

8.26

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	2 cut(s)	369, 385
AccII	CGCG	1 cut(s)	203
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	137, 434
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	4 cut(s)	584, 590, 796, 857
AfiI	CCNNNNNNNGG	2 cut(s)	159, 693
AgsI	TTSAA	4 cut(s)	110, 434, 449, 571
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	4 cut(s)	305, 499, 673, 742
AluI	AGCT	4 cut(s)	305, 499, 673, 742
Alw21I	GWGCWC	2 cut(s)	481, 753
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	3 cut(s)	337, 389, 604
ApoI	RAATTY	2 cut(s)	137, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
Asp700I	GAANNNNTTC	2 cut(s)	506, 846
AspS9I	GGNCC	3 cut(s)	123, 337, 604
AsuHPI	GGTGA	3 cut(s)	19, 23, 163
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	761
Bbv12I	GWGCWC	2 cut(s)	481, 753
BccI	CCATC	2 cut(s)	294, 785
BceAI	ACGGC	2 cut(s)	299, 404
BciT130I	CCWGG	1 cut(s)	576
BfaI	CTAG	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	123, 337, 604
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	4 cut(s)	7, 33, 43, 673
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	737
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	487, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 693
Bse1I	ACTGG	3 cut(s)	126, 590, 859
Bse3DI	GCAATG	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	487, 575
BseGI	GGATG	2 cut(s)	22, 286
BseLI	CCNNNNNNNGG	2 cut(s)	159, 693
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	3 cut(s)	30, 297, 362
BseNI	ACTGG	3 cut(s)	126, 590, 859
BseRI	GAGGAG	6 cut(s)	216, 231, 234, 248, 251, 390
BseSI	GKGCMC	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	339, 391, 606
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	481, 753
BslI	CCNNNNNNNGG	2 cut(s)	159, 693
BsnI	GGCC	3 cut(s)	339, 391, 606
Bsp1286I	GDGCHC	3 cut(s)	481, 753, 761
Bsp143I	GATC	3 cut(s)	62, 469, 726
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	339, 391, 606
BspCNI	CTCAG	3 cut(s)	31, 298, 361
BspFNI	CGCG	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	697
BsrI	ACTGG	3 cut(s)	126, 590, 859
BssECI	CCNNGG	2 cut(s)	487, 575
BssMI	GATC	3 cut(s)	62, 469, 726
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	4 cut(s)	234, 364, 488, 798
BstACI	GRCGYC	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	688
BstDEI	CTNAG	5 cut(s)	39, 306, 348, 561, 743
BstF5I	GGATG	2 cut(s)	22, 286
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	3 cut(s)	65, 472, 729
BstMBI	GATC	3 cut(s)	62, 469, 726
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 388, 748
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSLI	GKGCMC	1 cut(s)	761
BstUI	CGCG	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	339, 391, 606
BtsCI	GGATG	2 cut(s)	22, 286
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	688
CciI	TCATGA	1 cut(s)	711
Cfr13I	GGNCC	3 cut(s)	123, 337, 604
CseI	GACGC	2 cut(s)	45, 371
Csp6I	GTAC	4 cut(s)	583, 589, 795, 856
CviAII	CATG	1 cut(s)	712
CviQI	GTAC	4 cut(s)	583, 589, 795, 856
DdeI	CTNAG	5 cut(s)	39, 306, 348, 561, 743
DpnI	GATC	3 cut(s)	64, 471, 728
DpnII	GATC	3 cut(s)	62, 469, 726
Eam1104I	CTCTTC	4 cut(s)	234, 364, 488, 798
EarI	CTCTTC	4 cut(s)	234, 364, 488, 798
Eco47I	GGWCC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	574
FaeI	CATG	1 cut(s)	715
FaiI	YATR	8 cut(s)	51, 521, 713, 786, 799, 801, 836, 838
FatI	CATG	1 cut(s)	711
FauNDI	CATATG	2 cut(s)	799, 836
FblI	GTMKAC	2 cut(s)	369, 385
FokI	GGATG	2 cut(s)	29, 273
FspBI	CTAG	1 cut(s)	440
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	339, 391, 606
HgaI	GACGC	2 cut(s)	45, 371
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	715
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	2 cut(s)	671, 740
HinfI	GANTC	3 cut(s)	179, 371, 599
HphI	GGTGA	3 cut(s)	19, 23, 163
Hpy166II	GTNNAC	3 cut(s)	123, 370, 386
Hpy188I	TCNGA	5 cut(s)	166, 418, 491, 634, 651
Hpy188III	TCNNGA	4 cut(s)	38, 60, 712, 764
Hpy8I	GTNNAC	3 cut(s)	123, 370, 386
Hpy99I	CGWCG	3 cut(s)	61, 371, 379
HpyAV	CCTTC	3 cut(s)	246, 275, 803
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 388, 748
HpyF3I	CTNAG	5 cut(s)	39, 306, 348, 561, 743
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	62, 469, 726
LmnI	GCTCC	2 cut(s)	131, 491
LweI	GCATC	4 cut(s)	7, 33, 43, 673
MaeI	CTAG	1 cut(s)	440
MalI	GATC	3 cut(s)	64, 471, 728
MboI	GATC	3 cut(s)	62, 469, 726
MboII	GAAGA	7 cut(s)	16, 57, 221, 351, 475, 800, 815
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	3 cut(s)	481, 753, 761
MluCI	AATT	4 cut(s)	31, 110, 137, 434
MlyI	GAGTC	2 cut(s)	173, 365
MroXI	GAANNNNTTC	2 cut(s)	506, 846
MseI	TTAA	3 cut(s)	462, 738, 825
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	311, 388, 748
NdeI	CATATG	2 cut(s)	799, 836
NdeII	GATC	3 cut(s)	62, 469, 726
NlaIII	CATG	1 cut(s)	715
NlaIV	GGNNCC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	711
PdmI	GAANNNNTTC	2 cut(s)	506, 846
PfeI	GAWTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	159
PleI	GAGTC	2 cut(s)	173, 365
PpsI	GAGTC	2 cut(s)	173, 365
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	3 cut(s)	123, 337, 604
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	4 cut(s)	584, 590, 796, 857
RsaNI	GTAC	4 cut(s)	583, 589, 795, 856
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	462, 738, 825
Sau3AI	GATC	3 cut(s)	62, 469, 726
Sau96I	GGNCC	3 cut(s)	123, 337, 604
SchI	GAGTC	2 cut(s)	173, 365
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	3 cut(s)	481, 753, 761
SfaNI	GCATC	4 cut(s)	7, 33, 43, 673
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	4 cut(s)	31, 110, 137, 434
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	5 cut(s)	362, 369, 377, 403, 539
TasI	AATT	4 cut(s)	31, 110, 137, 434
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	3 cut(s)	462, 738, 825
Tru9I	TTAA	3 cut(s)	462, 738, 825
TscAI	CASTG	1 cut(s)	133
TspDTI	ATGAA	7 cut(s)	17, 435, 508, 700, 728, 801, 816
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	2 cut(s)	137, 434
XmiI	GTMKAC	2 cut(s)	369, 385
XmnI	GAANNNNTTC	2 cut(s)	506, 846
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.