Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Forward (+)

17051539 .. 17056135

Gene Structure 4597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007460

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATTTGTGCTCCGGGTCTTCGGGTTGGGCAGCGGAGGACTCAAAAAGCTAATCATAGAAGAGGAAAGAATAGTAATGTGACTTTGATTAGATTTGAGGTGGGTGTTAAAATGGAAGTTGACACTCTGCAAAAAATGGAAGGCCCAGAGAGGGAGAGAGAGAGCAGAGAAGAAGATGGTGGTGGTGGGCTTGGAGAAGTGGGTCTGGGGATGGTTGTGGTGGAGGGTAGGTGGTGGGATTGGATGAGAAGAATTCAGCCTCCACCACGCTGCTGTCGCCATTGTCGTAATCCACCTCCTCCCCTGACGTCAGAAATCTACCATGTATGCATCTGTACCCCCGGTGGCACCTCCACTCCACCATTGAAAGCAACAGAGGTGCAACCTACCAGCGAAGATAGAAAACCAGTAGTTGGTTCTTCCCCCAAGCAAAACTACACCGCCCTCACCGCCGGCAGCAGCGCTACAATCCTGCCTATGCTAGAGTCGCCGCCTCCGCAAACTAGAAGAGACTGCTCTAAATCACCTCCATCACCGCAGCCAAGAACCAACTTGTCACCACCAAACAAAGGGGGATCTCTAGGCTCCGACGCCGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTGGGGGTAAGCTTCGGGCTGATGCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTATGGTGCTCAAGGTTGAAGATGAATTGTCAAAGTTGGAGCAGCTCAAGTCAATTAAGCTCAAAGAGATCCTTCTGAAAAAGAAGTTGGAACTGGAGGAGGTATGCAGACAGTCTCACATGGTTACAGAAATACTGAGTGCTGCAAATTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

292

Amino Acids

32.02

Weight (kDa)

9.13

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	413
AciI	CCGC	6 cut(s)	34, 441, 450, 491, 497, 536
AclWI	GGATC	2 cut(s)	583, 781
AcsI	RAATTY	2 cut(s)	252, 865
AcyI	GRCGYC	2 cut(s)	308, 591
AfaI	GTAC	1 cut(s)	337
AfeI	AGCGCT	1 cut(s)	463
AfiI	CCNNNNNNNGG	4 cut(s)	151, 413, 569, 669
AgsI	TTSAA	3 cut(s)	367, 737, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AluBI	AGCT	5 cut(s)	50, 649, 718, 763, 778
AluI	AGCT	5 cut(s)	50, 649, 718, 763, 778
Alw21I	GWGCWC	2 cut(s)	13, 729
Alw26I	GTCTC	2 cut(s)	504, 837
AlwI	GGATC	2 cut(s)	583, 781
Aor51HI	AGCGCT	1 cut(s)	463
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	7 cut(s)	31, 270, 456, 459, 538, 760, 860
ApoI	RAATTY	2 cut(s)	252, 865
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	2 cut(s)	15, 342
AsuHPI	GGTGA	4 cut(s)	439, 516, 525, 549
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	13, 729
BbvI	GCAGC	7 cut(s)	43, 257, 468, 471, 550, 772, 847
BccI	CCATC	3 cut(s)	170, 205, 538
BcnI	CCSGG	2 cut(s)	15, 342
BcoDI	GTCTC	2 cut(s)	504, 837
BfaI	CTAG	3 cut(s)	482, 504, 581
BfoI	RGCGCY	1 cut(s)	465
BisI	GCNGC	8 cut(s)	32, 271, 457, 460, 491, 539, 761, 861
BlsI	GCNGC	8 cut(s)	33, 272, 458, 461, 492, 540, 762, 862
Bme1390I	CCNGG	2 cut(s)	15, 342
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	349, 586
BmrFI	CCNGG	2 cut(s)	15, 342
BmsI	GCATC	2 cut(s)	339, 649
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	833
BpuEI	CTTGAG	2 cut(s)	713, 749
BpuMI	CCSGG	2 cut(s)	15, 342
BsaHI	GRCGYC	2 cut(s)	308, 591
BsaJI	CCNNGG	2 cut(s)	340, 594
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 340, 370
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 413, 569, 669
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	407, 816
Bse3DI	GCAATG	1 cut(s)	673
BseDI	CCNNGG	2 cut(s)	340, 594
BseGI	GGATG	2 cut(s)	216, 249
BseLI	CCNNNNNNNGG	4 cut(s)	151, 413, 569, 669
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	1 cut(s)	845
BseNI	ACTGG	2 cut(s)	407, 816
BseRI	GAGGAG	2 cut(s)	288, 830
BseXI	GCAGC	7 cut(s)	43, 257, 468, 471, 550, 772, 847
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	13, 729
BsiSI	CCGG	3 cut(s)	14, 342, 453
BslI	CCNNNNNNNGG	4 cut(s)	151, 413, 569, 669
BsmAI	GTCTC	2 cut(s)	504, 837
BsnI	GGCC	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	13, 729
Bsp143I	GATC	3 cut(s)	575, 702, 786
BspACI	CCGC	6 cut(s)	34, 441, 450, 491, 497, 536
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	846
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	349, 586
BspPI	GGATC	2 cut(s)	583, 781
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	407, 816
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	340, 594
BssMI	GATC	3 cut(s)	575, 702, 786
BssNI	GRCGYC	2 cut(s)	308, 591
Bst4CI	ACNGT	1 cut(s)	831
Bst6I	CTCTTC	2 cut(s)	55, 502
BstACI	GRCGYC	2 cut(s)	308, 591
BstC8I	GCNNGC	2 cut(s)	454, 664
BstDEI	CTNAG	1 cut(s)	854
BstF5I	GGATG	2 cut(s)	216, 249
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	3 cut(s)	578, 705, 789
BstMAI	GTCTC	2 cut(s)	504, 837
BstMBI	GATC	3 cut(s)	575, 702, 786
BstMWI	GCNNNNNNNGC	5 cut(s)	276, 449, 487, 496, 724
BstSCI	CCNGG	2 cut(s)	13, 340
BstV1I	GCAGC	7 cut(s)	43, 257, 468, 471, 550, 772, 847
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	575, 786
BstYI	RGATCY	2 cut(s)	575, 786
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	216, 249
Cac8I	GCNNGC	2 cut(s)	454, 664
CciI	TCATGA	1 cut(s)	687
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	3 cut(s)	323, 688, 838
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	854
DpnI	GATC	3 cut(s)	577, 704, 788
DpnII	GATC	3 cut(s)	575, 702, 786
Eam1104I	CTCTTC	2 cut(s)	55, 502
EarI	CTCTTC	2 cut(s)	55, 502
Eco47III	AGCGCT	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	332
FaeI	CATG	3 cut(s)	326, 691, 841
FaiI	YATR	8 cut(s)	57, 324, 328, 479, 689, 722, 823, 839
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FatI	CATG	3 cut(s)	322, 687, 837
Fnu4HI	GCNGC	8 cut(s)	32, 271, 457, 460, 491, 539, 761, 861
FokI	GGATG	2 cut(s)	223, 256
Fsp4HI	GCNGC	8 cut(s)	32, 271, 457, 460, 491, 539, 761, 861
FspBI	CTAG	3 cut(s)	482, 504, 581
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	8 cut(s)	32, 271, 457, 460, 491, 539, 761, 861
GsuI	CTGGAG	1 cut(s)	833
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	3 cut(s)	14, 342, 453
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	464
Hin1I	GRCGYC	2 cut(s)	308, 591
Hin1II	CATG	3 cut(s)	326, 691, 841
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	2 cut(s)	40, 485
HpaII	CCGG	3 cut(s)	14, 342, 453
HphI	GGTGA	4 cut(s)	439, 516, 525, 549
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	313, 589, 627, 795
Hpy188III	TCNNGA	1 cut(s)	688
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	134, 800
HpyCH4III	ACNGT	1 cut(s)	831
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	5 cut(s)	130, 330, 382, 825, 863
HpyF10VI	GCNNNNNNNGC	5 cut(s)	276, 449, 487, 496, 724
HpyF3I	CTNAG	1 cut(s)	854
HpySE526I	ACGT	1 cut(s)	308
Hsp92I	GRCGYC	2 cut(s)	308, 591
Hsp92II	CATG	3 cut(s)	326, 691, 841
HspAI	GCGC	1 cut(s)	462
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	575, 702, 786
LmnI	GCTCC	3 cut(s)	16, 590, 757
Lsp1109I	GCAGC	7 cut(s)	43, 257, 468, 471, 550, 772, 847
LweI	GCATC	2 cut(s)	339, 649
MaeI	CTAG	3 cut(s)	482, 504, 581
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	3 cut(s)	79, 555, 841
MalI	GATC	3 cut(s)	577, 704, 788
MboI	GATC	3 cut(s)	575, 702, 786
MboII	GAAGA	9 cut(s)	11, 72, 182, 185, 261, 407, 411, 519, 749
MflI	RGATCY	2 cut(s)	575, 786
MhlI	GDGCHC	2 cut(s)	13, 729
MluCI	AATT	4 cut(s)	252, 743, 771, 865
MlyI	GAGTC	2 cut(s)	34, 494
MmeI	TCCRAC	3 cut(s)	612, 735, 786
Mph1103I	ATGCAT	1 cut(s)	332
MroNI	GCCGGC	1 cut(s)	452
MseI	TTAA	2 cut(s)	108, 774
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	3 cut(s)	14, 342, 453
MspR9I	CCNGG	2 cut(s)	15, 342
MwoI	GCNNNNNNNGC	5 cut(s)	276, 449, 487, 496, 724
NaeI	GCCGGC	1 cut(s)	454
NciI	CCSGG	2 cut(s)	15, 342
NdeII	GATC	3 cut(s)	575, 702, 786
NgoMIV	GCCGGC	1 cut(s)	452
NlaIII	CATG	3 cut(s)	326, 691, 841
NlaIV	GGNNCC	2 cut(s)	349, 586
NmeAIII	GCCGAG	1 cut(s)	619
NmuCI	GTSAC	2 cut(s)	79, 555
NsiI	ATGCAT	1 cut(s)	332
PagI	TCATGA	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PdiI	GCCGGC	1 cut(s)	454
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	8 cut(s)	33, 272, 458, 461, 492, 540, 762, 862
PleI	GAGTC	2 cut(s)	34, 493
PpsI	GAGTC	2 cut(s)	34, 493
PspN4I	GGNNCC	2 cut(s)	349, 586
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	575, 786
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	108, 774
SatI	GCNGC	8 cut(s)	32, 271, 457, 460, 491, 539, 761, 861
Sau3AI	GATC	3 cut(s)	575, 702, 786
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	34, 494
ScrFI	CCNGG	2 cut(s)	15, 342
SduI	GDGCHC	2 cut(s)	13, 729
SfaNI	GCATC	2 cut(s)	339, 649
SmlI	CTYRAG	2 cut(s)	728, 764
SmoI	CTYRAG	2 cut(s)	728, 764
Sse9I	AATT	4 cut(s)	252, 743, 771, 865
SsiI	CCGC	6 cut(s)	34, 441, 450, 491, 497, 536
SspMI	CTAG	3 cut(s)	482, 504, 581
StyD4I	CCNGG	2 cut(s)	13, 340
TaaI	ACNGT	1 cut(s)	831
TaiI	ACGT	1 cut(s)	311
TasI	AATT	4 cut(s)	252, 743, 771, 865
TauI	GCSGC	1 cut(s)	493
Tru1I	TTAA	2 cut(s)	108, 774
Tru9I	TTAA	2 cut(s)	108, 774
TseFI	GTSAC	2 cut(s)	79, 555
TseI	GCWGC	7 cut(s)	31, 270, 456, 459, 538, 760, 860
Tsp45I	GTSAC	2 cut(s)	79, 555
TspDTI	ATGAA	3 cut(s)	676, 704, 756
Van91I	CCANNNNNTGG	1 cut(s)	413
XapI	RAATTY	2 cut(s)	252, 865
XspI	CTAG	3 cut(s)	482, 504, 581
ZraI	GACGTC	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.