Rh2AG587000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
81898940 .. 81899284
345 bp
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UTR
Exon/CDS
Intron
Rh2AG587000.1

Sequence Viewer

Length: 345 bp
ATGTTAAGTCATTGCCCTCTACTTTTAACTACTTTTTGTGATTTGAAGTTGCAATTTAAGTGGATATCTGTGAAACTAGTTCTAAACTCATTGGCACATGTTTTTGCTAGGTTCATTCGCAGCTACACCAAGGACTGGAAATTCAAGTTACAAGTATTTTTATCTTATAACAAACTGCTACTTTTTTCTCCTTTTCTTTTTATTGTATCTACAAACAGAGCAACTTGTCTTCATATGGTTTATTTAGGAGACTTTAATCTTGTTCTTTTCTTTTGCTATTGTATATGGAGAAGTTTAGGCCATATGTCCCCTTCTCCCTACTCTTTGTATTGTTTTTATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.6

Weight (kDa)

9.39

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 135
AcsI RAATTY 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 2 cut(s) 46, 145
AhlI ACTAGT 1 cut(s) 76
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 243
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 243
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 2 cut(s) 77, 108
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 300
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 1 cut(s) 300
BspANI GGCC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
CviAII CATG 1 cut(s) 98
CviJI RGCY 2 cut(s) 123, 300
CviKI_1 RGCY 2 cut(s) 123, 300
Eco130I CCWWGG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 66
EcoRV GATATC 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 101
FaiI YATR 8 cut(s) 99, 168, 234, 236, 284, 286, 303, 305
FaqI GGGAC 1 cut(s) 292
FatI CATG 1 cut(s) 97
FauNDI CATATG 2 cut(s) 234, 303
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 2 cut(s) 77, 108
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 300
Hin1II CATG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 52
Hsp92II CATG 1 cut(s) 101
LpnPI CCDG 1 cut(s) 121
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 2 cut(s) 77, 108
MaeIII GTNAC 1 cut(s) 147
MboII GAAGA 1 cut(s) 221
MluCI AATT 2 cut(s) 53, 140
MnlI CCTC 1 cut(s) 27
MseI TTAA 4 cut(s) 5, 26, 57, 255
NdeI CATATG 2 cut(s) 234, 303
NlaIII CATG 1 cut(s) 101
NspI RCATGY 1 cut(s) 101
PciI ACATGT 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 1 cut(s) 122
PscI ACATGT 1 cut(s) 97
PsiI TTATAA 1 cut(s) 168
SaqAI TTAA 4 cut(s) 5, 26, 57, 255
SatI GCNGC 1 cut(s) 121
SetI ASST 2 cut(s) 113, 125
SgeI CNNG 9 cut(s) 89, 110, 120, 142, 148, 157, 164, 237, 272
SpeI ACTAGT 1 cut(s) 76
Sse9I AATT 2 cut(s) 53, 140
SspMI CTAG 2 cut(s) 77, 108
StyI CCWWGG 1 cut(s) 129
TasI AATT 2 cut(s) 53, 140
Tru1I TTAA 4 cut(s) 5, 26, 57, 255
Tru9I TTAA 4 cut(s) 5, 26, 57, 255
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 103, 221
Van91I CCANNNNNTGG 1 cut(s) 135
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 101
XspI CTAG 2 cut(s) 77, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.