Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Reverse (-)

41011323 .. 41029447

Gene Structure 18125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAAGTGATACCGTCGGGGTGGAAGGAGAAAAGAGAAGGAGGAGGGGCAAGGCGGAGCTCCGGCGTGGACTGCGTCTTTGGCGGATCTGGTGAATTTGAGAAGAGAGATGAGAGACCAGGGACCCCGGATTCAGGGCACTTACCGAGGCAAGCAACTCTACACCAAGCACAGATTGGTGAAATATATGAGTGTCCGGCAAATCAGCTTCGGCTGCAACAGTTGGTTGTGAATGGGAGGGAGTTGAGGGAAGAAGAGCTGGGTGAGATTTTGGGATGTGAAGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTAGGGGTAAGCTTCAGGCTGATCCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGCTGGCCAAAGTGCAGTGCCCTCCAGATACTCATTTCTGGGTGTATGAAGATGGTACATATGAGGAGGAAGGGCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

166

Amino Acids

18.53

Weight (kDa)

5.23

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	55, 84
AclWI	GGATC	2 cut(s)	94, 341
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	134, 356, 357
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	6 cut(s)	60, 208, 259, 337, 406, 421
AluI	AGCT	6 cut(s)	60, 208, 259, 337, 406, 421
Alw21I	GWGCWC	2 cut(s)	62, 417
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	94, 341
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	95
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	104, 191, 275
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	2 cut(s)	141, 440
BalI	TGGCCA	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	62
Bbv12I	GWGCWC	2 cut(s)	62, 417
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	464
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	120, 128
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	124, 125
BmrFI	CCNGG	2 cut(s)	120, 128
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	119, 126, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 356, 357
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	119, 126, 146
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	3 cut(s)	134, 356, 357
BseMI	GCAATG	1 cut(s)	361
BseRI	GAGGAG	2 cut(s)	57, 497
BseSI	GKGCMC	2 cut(s)	141, 440
BseXI	GCAGC	1 cut(s)	201
BseYI	CCCAGC	2 cut(s)	259, 350
BsgI	GTGCAG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	62, 417
BsiSI	CCGG	3 cut(s)	63, 128, 197
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	3 cut(s)	134, 356, 357
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	425
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	4 cut(s)	62, 141, 417, 440
Bsp143I	GATC	3 cut(s)	86, 346, 390
BspACI	CCGC	2 cut(s)	55, 84
BspANI	GGCC	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	124, 125
BspPI	GGATC	2 cut(s)	94, 341
BspQI	GCTCTTC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	361
BssECI	CCNNGG	3 cut(s)	119, 126, 146
BssMI	GATC	3 cut(s)	86, 346, 390
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	15, 222
Bst6I	CTCTTC	3 cut(s)	98, 249, 276
BstC8I	GCNNGC	2 cut(s)	153, 423
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	281
BstKTI	GATC	3 cut(s)	89, 349, 393
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	86, 346, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 81, 214, 412
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	118, 126
BstSLI	GKGCMC	2 cut(s)	141, 440
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	153, 423
CciI	TCATGA	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	3 cut(s)	88, 348, 392
DpnII	GATC	3 cut(s)	86, 346, 390
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	3 cut(s)	98, 249, 276
EarI	CTCTTC	3 cut(s)	98, 249, 276
EciI	GGCGGA	2 cut(s)	70, 99
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	1 cut(s)	379
FaiI	YATR	6 cut(s)	187, 189, 377, 465, 478, 480
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	215
GsaI	CCCAGC	2 cut(s)	263, 354
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	3 cut(s)	63, 128, 197
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	3 cut(s)	63, 128, 197
HphI	GGTGA	3 cut(s)	104, 191, 275
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	2 cut(s)	376, 443
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	19, 32, 482
HpyCH4III	ACNGT	2 cut(s)	15, 222
HpyCH4V	TGCA	2 cut(s)	217, 433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 81, 214, 412
HpyF3I	CTNAG	1 cut(s)	407
Hsp92II	CATG	1 cut(s)	379
KflI	GGGWCCC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	86, 346, 390
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	57, 65
Lsp1109I	GCAGC	1 cut(s)	201
MalI	GATC	3 cut(s)	88, 348, 392
MboI	GATC	3 cut(s)	86, 346, 390
MboII	GAAGA	5 cut(s)	115, 263, 266, 293, 479
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	4 cut(s)	62, 141, 417, 440
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	2 cut(s)	95, 496
MluNI	TGGCCA	1 cut(s)	425
MnlI	CCTC	9 cut(s)	35, 38, 141, 231, 240, 277, 450, 475, 478
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	1 cut(s)	499
Msp20I	TGGCCA	1 cut(s)	425
MspI	CCGG	3 cut(s)	63, 128, 197
MspR9I	CCNGG	2 cut(s)	120, 128
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	4 cut(s)	72, 81, 214, 412
NciI	CCSGG	1 cut(s)	128
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	3 cut(s)	86, 346, 390
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	124, 125
PagI	TCATGA	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	131
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	118
PspFI	CCCAGC	2 cut(s)	259, 350
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	124, 125
PspPI	GGNCC	1 cut(s)	123
PspPPI	RGGWCCY	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	86
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	86, 346, 390
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	120, 128
SduI	GDGCHC	4 cut(s)	62, 141, 417, 440
SetI	ASST	6 cut(s)	62, 210, 261, 339, 408, 423
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	95, 496
SsiI	CCGC	2 cut(s)	55, 84
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	118, 126
TaaI	ACNGT	2 cut(s)	15, 222
TasI	AATT	2 cut(s)	95, 496
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TscAI	CASTG	1 cut(s)	440
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	17, 364, 392, 480
TspRI	CASTG	1 cut(s)	440
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.