Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Forward (+)

5136113 .. 5138868

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG060700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATAGATTTTGCTTCGTATAGGTTGGGTACTGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTGGGGGTAAGCTTCGGGCTGATGCCAGTAATGGGAACACTAATGTATGCCATATGCCTGTGTCTGAATACGTCACTCCTGAGGCTTTTGATAAGTATCGAGAGATAGGCGAGGAAATGGGGTTCCAGTATGTGGCATCTGGTCCCATGGTCAGGTCGTCATACAAAGCAGGCAAAGCAGTGGTGGGCTTCTTCGAGGCAGTTGGAGTCCCAAAGAGCGTGGATGACACTGCTGAGGTTGAGCGGGTCGATGCGGTAGCCACAGAGGTGGAGGAGGTGGAGGGCTTGGCCGACATTGCGGTGGCAGGTGTAGAAGAAGAAGAAGACTGTGAGGACCTGATCTGCCGTGGGAGAAGAAAACGAAGGATCGGTGCGATCAGGTTTGTCGGCGGAGCCAGAGACGAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

161

Amino Acids

17.54

Weight (kDa)

4.72

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccBSI	CCGCTC	2 cut(s)	319, 481
AciI	CCGC	5 cut(s)	319, 329, 374, 465, 481
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	363
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	3 cut(s)	108, 208, 228
AleI	CACNNNNGTG	1 cut(s)	341
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	218, 409
AvaII	GGWCC	2 cut(s)	218, 409
AxyI	CCTNAGG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	371
Bme18I	GGWCC	2 cut(s)	218, 409
BmgT120I	GGNCC	2 cut(s)	218, 409
BmiI	GGNNCC	3 cut(s)	200, 220, 469
BmsI	GCATC	3 cut(s)	88, 221, 316
BpiI	GAAGAC	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	222, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 208, 228
Bse1I	ACTGG	2 cut(s)	102, 202
Bse21I	CCTNAGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	222, 421
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	108, 208, 228
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	24, 147, 300
BseNI	ACTGG	2 cut(s)	102, 202
BseRI	GAGGAG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	204, 269
BslI	CCNNNNNNNGG	3 cut(s)	108, 208, 228
BsmAI	GTCTC	1 cut(s)	468
BsmBI	CGTCTC	1 cut(s)	468
BsmFI	GGGAC	2 cut(s)	204, 269
BsnI	GGCC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	414, 441, 450
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	5 cut(s)	319, 329, 374, 465, 481
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	3 cut(s)	25, 148, 301
BspLI	GGNNCC	3 cut(s)	200, 220, 469
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	449
BsrBI	CCGCTC	2 cut(s)	319, 481
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	102, 202
BssECI	CCNNGG	2 cut(s)	222, 421
BssMI	GATC	3 cut(s)	414, 441, 450
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	33, 156, 309
BstDSI	CCRYGG	2 cut(s)	222, 421
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	3 cut(s)	417, 444, 453
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	414, 441, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 371
BstV2I	GAAGAC	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	365
BtgI	CCRYGG	2 cut(s)	222, 421
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	2 cut(s)	261, 303
BtsIMutI	CAGTG	2 cut(s)	261, 303
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	218, 409
Csp6I	GTAC	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	9 cut(s)	46, 88, 95, 161, 264, 335, 360, 365, 470
CviKI_1	RGCY	9 cut(s)	46, 88, 95, 161, 264, 335, 360, 365, 470
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	33, 156, 309
DpnI	GATC	3 cut(s)	416, 443, 452
DpnII	GATC	3 cut(s)	414, 441, 450
EaeI	YGGCCR	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	218, 409
Eco81I	CCTNAGG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	468
FaeI	CATG	1 cut(s)	226
FaiI	YATR	7 cut(s)	21, 124, 129, 131, 207, 224, 238
FaqI	GGGAC	2 cut(s)	204, 269
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	1 cut(s)	129
FokI	GGATG	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	365
Hin1II	CATG	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	66, 142
Hpy188III	TCNNGA	2 cut(s)	155, 176
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 371
HpyF3I	CTNAG	3 cut(s)	33, 156, 309
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	414, 441, 450
LmnI	GCTCC	1 cut(s)	467
LweI	GCATC	3 cut(s)	88, 221, 316
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	3 cut(s)	416, 443, 452
MbiI	CCGCTC	2 cut(s)	319, 481
MboI	GATC	3 cut(s)	414, 441, 450
MboII	GAAGA	6 cut(s)	259, 401, 404, 407, 410, 441
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	259
MslI	CAYNNNNRTG	2 cut(s)	341, 374
MwoI	GCNNNNNNNGC	2 cut(s)	251, 371
NcoI	CCATGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	3 cut(s)	414, 441, 450
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	3 cut(s)	200, 220, 469
NmuCI	GTSAC	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	341
PaqCI	CACCTGC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	208
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
PspN4I	GGNNCC	3 cut(s)	200, 220, 469
PspPI	GGNCC	2 cut(s)	218, 409
PspPPI	RGGWCCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	341, 374
Sau3AI	GATC	3 cut(s)	414, 441, 450
Sau96I	GGNCC	2 cut(s)	218, 409
SchI	GAGTC	1 cut(s)	291
SfaNI	GCATC	3 cut(s)	88, 221, 316
SinI	GGWCC	2 cut(s)	218, 409
SmiMI	CAYNNNNRTG	2 cut(s)	341, 374
SsiI	CCGC	5 cut(s)	319, 329, 374, 465, 481
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	175, 270, 324
TscAI	CASTG	2 cut(s)	261, 310
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspRI	CASTG	2 cut(s)	261, 310
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	218, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.