Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Reverse (-)

25365708 .. 25370567

Gene Structure 4860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG245800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAACGTAACAGATTAAAGCATGATGGAGGGACCCCGGATTCAGGGCACTTACCGAGGCAAGCAACTCTACACCAAGCACAGATTGGTAAAATATATGAGTGTCCGGCAAATCAGCTCTGGCTGCAGCAGTTGGTTGTGAATGGGAGGCAGTTGAAGGAAGAAGAGCTGGGTGAGATTTTGGGATGTGAAGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTGGGGGTAAGCTTCGGGCTGATGCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGGTATGCAAAATCATTAACCAAAAGCTCGCAGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

122

Amino Acids

13.61

Weight (kDa)

7.69

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	44, 267
AgsI	TTSAA	2 cut(s)	157, 365
AluBI	AGCT	5 cut(s)	118, 169, 247, 316, 355
AluI	AGCT	5 cut(s)	118, 169, 247, 316, 355
Alw21I	GWGCWC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	124, 127
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	111, 139
BccI	CCATC	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	125, 128
BlsI	GCNGC	2 cut(s)	126, 129
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	34, 35
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	36, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 267
Bse3DI	GCAATG	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	36, 56
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	2 cut(s)	44, 267
BseMI	GCAATG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	111, 139
BseYI	CCCAGC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	38, 107
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	44, 267
BsmFI	GGGAC	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	51, 327
Bsp143I	GATC	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	34, 35
BspMAI	CTGCAG	1 cut(s)	129
BspQI	GCTCTTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	36, 56
BssMI	GATC	1 cut(s)	300
Bst6I	CTCTTC	2 cut(s)	159, 186
BstC8I	GCNNGC	3 cut(s)	63, 262, 357
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 322
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	125
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	111, 139
BtsCI	GGATG	1 cut(s)	191
Cac8I	GCNNGC	3 cut(s)	63, 262, 357
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	2 cut(s)	23, 286
CviJI	RGCY	8 cut(s)	118, 124, 169, 205, 247, 254, 316, 355
CviKI_1	RGCY	8 cut(s)	118, 124, 169, 205, 247, 254, 316, 355
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	159, 186
EarI	CTCTTC	2 cut(s)	159, 186
Eco47I	GGWCC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	33
FaeI	CATG	2 cut(s)	26, 289
FaiI	YATR	5 cut(s)	24, 97, 99, 287, 334
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	22, 285
Fnu4HI	GCNGC	2 cut(s)	125, 128
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	125, 128
GluI	GCNGC	2 cut(s)	125, 128
GsaI	CCCAGC	1 cut(s)	173
HapII	CCGG	2 cut(s)	38, 107
Hin1II	CATG	2 cut(s)	26, 289
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	38, 107
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	127, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 322
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	26, 289
KflI	GGGWCCC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	300
LguI	GCTCTTC	1 cut(s)	159
LpnPI	CCDG	7 cut(s)	30, 51, 106, 120, 155, 219, 274
Lsp1109I	GCAGC	2 cut(s)	111, 139
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	3 cut(s)	173, 176, 203
MhlI	GDGCHC	2 cut(s)	51, 327
MnlI	CCTC	4 cut(s)	23, 51, 141, 187
MseI	TTAA	2 cut(s)	17, 345
MspI	CCGG	2 cut(s)	38, 107
MspR9I	CCNGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	124, 322
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	2 cut(s)	26, 289
NlaIV	GGNNCC	2 cut(s)	34, 35
PagI	TCATGA	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	126, 129
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	34, 35
PspPI	GGNCC	1 cut(s)	33
PspPPI	RGGWCCY	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	17, 345
SatI	GCNGC	2 cut(s)	125, 128
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	51, 327
SetI	ASST	7 cut(s)	10, 120, 171, 249, 318, 333, 357
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	17, 345
Tru9I	TTAA	2 cut(s)	17, 345
TseI	GCWGC	2 cut(s)	124, 127
TspDTI	ATGAA	2 cut(s)	274, 302
VpaK11BI	GGWCC	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.