Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002007.1

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Reverse (-)

7775 .. 8241

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002007.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgtcttggaagggagagaagcctgattgtatcattactccgaaactgaatgttgggggtaagctttgggctgatgccagcaatgggaacactaatgtattcatgaatggcagagagatcacaaagattgagcttagggtgctcaagctgaccaaagtacagtgccctccagatactcatttctgggtgtatgaaaactggaggaggtatgcagacagtctcacatggttacagaaatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

80

Amino Acids

9.4

Weight (kDa)

9.26

Isoelectric Point (pI)

16.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	64, 133, 148
AluI	AGCT	3 cut(s)	64, 133, 148
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	224
BmsI	GCATC	1 cut(s)	64
BpmI	CTGGAG	2 cut(s)	153, 220
Bpu10I	CCTNAGC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	144, 167
Bsp143I	GATC	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	162, 218
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	2 cut(s)	103, 225
CviJI	RGCY	5 cut(s)	22, 64, 71, 133, 148
CviKI_1	RGCY	5 cut(s)	22, 64, 71, 133, 148
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
FaeI	CATG	2 cut(s)	106, 228
FaiI	YATR	4 cut(s)	104, 192, 210, 226
FatI	CATG	2 cut(s)	102, 224
GsuI	CTGGAG	2 cut(s)	153, 220
Hin1II	CATG	2 cut(s)	106, 228
HindIII	AAGCTT	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	103, 170
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	2 cut(s)	162, 218
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	106, 228
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	5 cut(s)	36, 91, 169, 183, 184
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	144, 167
MnlI	CCTC	3 cut(s)	177, 195, 198
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	2 cut(s)	106, 228
PagI	TCATGA	1 cut(s)	102
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	144, 167
SetI	ASST	4 cut(s)	66, 135, 150, 209
SfaNI	GCATC	1 cut(s)	64
SgeI	CNNG	9 cut(s)	18, 35, 90, 115, 157, 182, 196, 211, 237
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	162, 218
TatI	WGTACW	1 cut(s)	157
TscAI	CASTG	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	91, 119, 207
TspRI	CASTG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.