Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Reverse (-)

45112173 .. 45114291

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019035

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCCATGGATCTAGCTAGTCAGTTACATCAATTCAAAGGGAACAATTCAAAACACAGAGCCATATATGTTGTAGTGGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTGGGGGTAAGCTTCGGGCTGATGCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGGTTGAAGATGAATTGTCAAAGTTGGAGCAGCTCAAGTCAATTAAGCTCAAAGAGATCCTTCTGAAAAAGAAGTTGGAACTGGAGGAGGTATGCAGACAGTCTCACATGGTTACAGAAATACTGAGTGCTGCAAATTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

120

Amino Acids

13.4

Weight (kDa)

9.12

Isoelectric Point (pI)

22.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	18, 265
AcsI	RAATTY	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	4 cut(s)	37, 51, 221, 354
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	5 cut(s)	17, 133, 202, 247, 262
AluI	AGCT	5 cut(s)	17, 133, 202, 247, 262
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	18, 265
ApeKI	GCWGC	2 cut(s)	244, 344
ApoI	RAATTY	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	256, 331
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	14, 18
BisI	GCNGC	2 cut(s)	245, 345
BlsI	GCNGC	2 cut(s)	246, 346
BmsI	GCATC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	197, 233
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	256, 331
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	10, 186, 270
Bsp19I	CCATGG	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	171
BspPI	GGATC	2 cut(s)	18, 265
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	10, 186, 270
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	203, 338
BstDSI	CCRYGG	1 cut(s)	6
BstKTI	GATC	3 cut(s)	13, 189, 273
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	10, 186, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	256, 331
BstX2I	RGATCY	2 cut(s)	10, 270
BstYI	RGATCY	2 cut(s)	10, 270
BtgI	CCRYGG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	148
CciI	TCATGA	1 cut(s)	171
CviAII	CATG	3 cut(s)	7, 172, 322
CviJI	RGCY	8 cut(s)	17, 62, 91, 133, 140, 202, 247, 262
CviKI_1	RGCY	8 cut(s)	17, 62, 91, 133, 140, 202, 247, 262
DdeI	CTNAG	2 cut(s)	203, 338
DpnI	GATC	3 cut(s)	12, 188, 272
DpnII	GATC	3 cut(s)	10, 186, 270
Eco130I	CCWWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	10, 175, 325
FaiI	YATR	7 cut(s)	8, 65, 67, 69, 173, 307, 323
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	3 cut(s)	6, 171, 321
Fnu4HI	GCNGC	2 cut(s)	245, 345
Fsp4HI	GCNGC	2 cut(s)	245, 345
FspBI	CTAG	2 cut(s)	14, 18
GluI	GCNGC	2 cut(s)	245, 345
GsuI	CTGGAG	1 cut(s)	317
Hin1II	CATG	3 cut(s)	10, 175, 325
HindIII	AAGCTT	1 cut(s)	131
Hpy188I	TCNGA	2 cut(s)	111, 279
Hpy188III	TCNNGA	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	309, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	2 cut(s)	203, 338
Hsp92II	CATG	3 cut(s)	10, 175, 325
Kzo9I	GATC	3 cut(s)	10, 186, 270
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	3 cut(s)	105, 160, 281
Lsp1109I	GCAGC	2 cut(s)	256, 331
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	14, 18
MaeIII	GTNAC	2 cut(s)	24, 325
MalI	GATC	3 cut(s)	12, 188, 272
MboI	GATC	3 cut(s)	10, 186, 270
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	2 cut(s)	10, 270
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	5 cut(s)	32, 46, 227, 255, 349
MmeI	TCCRAC	2 cut(s)	219, 270
MnlI	CCTC	3 cut(s)	73, 292, 295
MseI	TTAA	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	208
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	10, 186, 270
NlaIII	CATG	3 cut(s)	10, 175, 325
PagI	TCATGA	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	246, 346
PsuI	RGATCY	2 cut(s)	10, 270
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	245, 345
Sau3AI	GATC	3 cut(s)	10, 186, 270
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	7 cut(s)	19, 135, 204, 219, 249, 264, 306
SfaNI	GCATC	1 cut(s)	133
SmlI	CTYRAG	2 cut(s)	212, 248
SmoI	CTYRAG	2 cut(s)	212, 248
Sse9I	AATT	5 cut(s)	32, 46, 227, 255, 349
SspMI	CTAG	2 cut(s)	14, 18
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	315
TasI	AATT	5 cut(s)	32, 46, 227, 255, 349
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	2 cut(s)	244, 344
TspDTI	ATGAA	3 cut(s)	160, 188, 240
XapI	RAATTY	1 cut(s)	349
XspI	CTAG	2 cut(s)	14, 18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.