Rh6CG173500

Yip1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003489
Physical Location & Seq
Reverse (-)
24409621 .. 24418002
8382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG173500.1

Sequence Viewer

Length: 657 bp
ATGAAGCATAATTACCCAAGAGGGGTGTTGTGGAAGTGCTTTTTCTCCGTCTTCGGCTTGGTCCCAAAAGAGCCTTCAGTTCTTACAAATTGTGTTTTTGCTGTACTTGCTGCTGGTGCTGTCATTTTGACTTTGAATGTACTCCTACTGGGTGGACACATAATTTTCTTTCAAAGCCTAAGTCTTCTTGGTTATTTCTTATTCCCTCTGGATGTTGGAGCTTTAATCTGTATGGTGAAGGACAATGTGATATTGAAGGTTGTTGTAGTACGCATTACACTGGCTTGGAGTTCTTGGTCTGCATATCCTTTCATGAATTCAGCAGTCAACCCCAGGAGAAAAGCTCTAGCACTTTACCCAGTTTTCTTGCTATTTGTTCCTACATTATTGCTTGCTACTAAATCGATCTCTGGACCTATGGAATTCATCCTTAGAGTCATGAATATCAGCTCTACTTCACTACATGGAATAGACCATTCTGGTTGCATGGGATTATTGAAAGATATAATTCCATGGTTTCCATGGATGGTAATGCATAACTTCAAATGTTACCATTCAAAGCTACTAAGATTAGGCTTTTACGTAGCCTATGTATTCACACTCAAACAATGCAGGTTCATTCGCAGCTACACCAAGGACTGGAAATTCAAATTACAA

Protein Analysis

219

Amino Acids

24.95

Weight (kDa)

9.82

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 33 - 130 6.6e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 603
AccB7I CCANNNNNTGG 1 cut(s) 639
AcsI RAATTY 3 cut(s) 316, 422, 644
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 3 cut(s) 105, 141, 270
AfiI CCNNNNNNNGG 2 cut(s) 22, 639
AgsI TTSAA 7 cut(s) 136, 173, 256, 499, 544, 558, 649
AjnI CCWGG 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 5 cut(s) 221, 344, 450, 562, 627
AluI AGCT 5 cut(s) 221, 344, 450, 562, 627
ApeKI GCWGC 2 cut(s) 110, 624
ApoI RAATTY 3 cut(s) 316, 422, 644
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspS9I GGNCC 2 cut(s) 61, 413
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 2 cut(s) 61, 413
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 43, 176
BbvI GCAGC 2 cut(s) 97, 636
BccI CCATC 1 cut(s) 520
BciT130I CCWGG 1 cut(s) 334
BfaI CTAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 603
BisI GCNGC 2 cut(s) 111, 625
BlsI GCNGC 2 cut(s) 112, 626
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 2 cut(s) 61, 413
BmgT120I GGNCC 2 cut(s) 61, 413
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 2 cut(s) 158, 353
BmuI ACTGGG 2 cut(s) 158, 353
BpiI GAAGAC 2 cut(s) 43, 176
BplI GAGNNNNNCTC 2 cut(s) 328, 360
Bsa29I ATCGAT 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 583
BsaJI CCNNGG 4 cut(s) 332, 512, 521, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 639
Bse1I ACTGG 4 cut(s) 153, 285, 359, 644
BseBI CCWGG 1 cut(s) 334
BseCI ATCGAT 1 cut(s) 404
BseDI CCNNGG 4 cut(s) 332, 512, 521, 633
BseGI GGATG 3 cut(s) 217, 426, 531
BseLI CCNNNNNNNGG 2 cut(s) 22, 639
BseNI ACTGG 4 cut(s) 153, 285, 359, 644
BseXI GCAGC 2 cut(s) 97, 636
BshVI ATCGAT 1 cut(s) 404
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 22, 639
BsmFI GGGAC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 405
Bsp19I CCATGG 2 cut(s) 512, 521
BspDI ATCGAT 1 cut(s) 404
BspHI TCATGA 2 cut(s) 312, 438
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 603
BsrI ACTGG 4 cut(s) 153, 285, 359, 644
BssECI CCNNGG 4 cut(s) 332, 512, 521, 633
BssMI GATC 1 cut(s) 405
BssT1I CCWWGG 3 cut(s) 512, 521, 633
Bst2UI CCWGG 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 179, 431, 566
BstDSI CCRYGG 2 cut(s) 512, 521
BstF5I GGATG 3 cut(s) 217, 426, 531
BstKTI GATC 1 cut(s) 408
BstMBI GATC 1 cut(s) 405
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 332
BstSNI TACGTA 1 cut(s) 583
BstV1I GCAGC 2 cut(s) 97, 636
BstV2I GAAGAC 2 cut(s) 43, 176
Bsu15I ATCGAT 1 cut(s) 404
BsuTUI ATCGAT 1 cut(s) 404
BtgI CCRYGG 2 cut(s) 512, 521
BtsCI GGATG 3 cut(s) 217, 426, 531
BtsIMutI CAGTG 1 cut(s) 278
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 2 cut(s) 312, 438
Cfr13I GGNCC 2 cut(s) 61, 413
ClaI ATCGAT 1 cut(s) 404
Csp6I GTAC 3 cut(s) 104, 140, 269
CviAII CATG 6 cut(s) 313, 439, 464, 487, 513, 522
CviQI GTAC 3 cut(s) 104, 140, 269
DdeI CTNAG 3 cut(s) 179, 431, 566
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
Eco105I TACGTA 1 cut(s) 583
Eco130I CCWWGG 3 cut(s) 512, 521, 633
Eco47I GGWCC 2 cut(s) 61, 413
Eco57I CTGAAG 1 cut(s) 60
EcoRI GAATTC 2 cut(s) 316, 422
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 3 cut(s) 512, 521, 633
EcoT22I ATGCAT 1 cut(s) 537
ErhI CCWWGG 3 cut(s) 512, 521, 633
FaeI CATG 6 cut(s) 316, 442, 467, 490, 516, 525
FaqI GGGAC 1 cut(s) 47
FatI CATG 6 cut(s) 312, 438, 463, 486, 512, 521
Fnu4HI GCNGC 2 cut(s) 111, 625
FokI GGATG 3 cut(s) 224, 413, 538
Fsp4HI GCNGC 2 cut(s) 111, 625
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 111, 625
Hin1II CATG 6 cut(s) 316, 442, 467, 490, 516, 525
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 435
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 155, 328
Hpy188III TCNNGA 4 cut(s) 209, 313, 411, 439
Hpy8I GTNNAC 2 cut(s) 155, 328
HpyAV CCTTC 3 cut(s) 84, 232, 250
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 4 cut(s) 302, 486, 535, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
HpyF3I CTNAG 3 cut(s) 179, 431, 566
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 6 cut(s) 316, 442, 467, 490, 516, 525
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 218
Lsp1109I GCAGC 2 cut(s) 97, 636
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 548
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 2 cut(s) 43, 176
MluCI AATT 8 cut(s) 10, 88, 162, 316, 422, 507, 644, 650
MlyI GAGTC 1 cut(s) 444
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 2 cut(s) 14, 216
Mph1103I ATGCAT 1 cut(s) 537
MseI TTAA 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NcoI CCATGG 2 cut(s) 512, 521
NdeII GATC 1 cut(s) 405
NlaIII CATG 6 cut(s) 316, 442, 467, 490, 516, 525
NlaIV GGNNCC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 537
PagI TCATGA 2 cut(s) 312, 438
PflMI CCANNNNNTGG 1 cut(s) 639
PkrI GCNGC 2 cut(s) 112, 626
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
Ppu21I YACGTR 1 cut(s) 583
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 61, 413
RsaI GTAC 3 cut(s) 105, 141, 270
RsaNI GTAC 3 cut(s) 104, 140, 269
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 2 cut(s) 111, 625
Sau3AI GATC 1 cut(s) 405
Sau96I GGNCC 2 cut(s) 61, 413
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 334
SetI ASST 9 cut(s) 223, 261, 346, 418, 452, 564, 585, 617, 629
SinI GGWCC 2 cut(s) 61, 413
SnaBI TACGTA 1 cut(s) 583
Sse9I AATT 8 cut(s) 10, 88, 162, 316, 422, 507, 644, 650
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 3 cut(s) 512, 521, 633
TaiI ACGT 1 cut(s) 585
TaqI TCGA 1 cut(s) 404
TasI AATT 8 cut(s) 10, 88, 162, 316, 422, 507, 644, 650
TatI WGTACW 2 cut(s) 103, 139
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 1 cut(s) 285
TseI GCWGC 2 cut(s) 110, 624
TspDTI ATGAA 6 cut(s) 17, 301, 329, 415, 455, 607
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 639
VpaK11BI GGWCC 2 cut(s) 61, 413
XapI RAATTY 3 cut(s) 316, 422, 644
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XspI CTAG 1 cut(s) 347
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.