Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000125.1

Orthogroup ID

OG0003489

Physical Location & Seq

Genomic Coordinates Reverse (-)

8098 .. 11022

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000125.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgccagtcgacgccaccaccaagcggaatcttctccgcctctcgctgactcctcgctgtgacccaacgtcaatctcattcgacacgctcccaacaagacctctccacaatttatggggagaaggatggttttgcaatcgccagactctcacgctggacaaaattaaccaagagggttttcagttgggattctggtcaaatccgctttgtgggtcgggcccacctatctgccacgtgagcattgccaaatattggttcaaacagcggctaattagaagccggagctgcggtcgccgttctcctttctctctccttaggcctccccctctcaacccctctcttcgaccgtcgactcgcaaggcgtctacggcctctctctcctcgactgagggagagaagcctgattgtatcattactccgaaactgaatgttgggggtaagcttcgggctgatgccagcaatgggaacactaatgtattcatgaatggcagagagatcacaaacattgagcttagggtgctcaaggttgaagatgaattgtcaaagttggagcagcttaagccaattaagctcaaagagatccttctgaaaaagaagttggaactggaggaggtatgcagacagtctcacatggttacagaaatactgagtgctgcaaattcaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04015 ko04022 ko04024 ko04062 ko04071 ko04261 ko04360 ko04371 ko04540 ko04611 ko04670 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04730 ko04914 ko04915 ko04916 ko04921 ko04923 ko04924 ko04926 ko04934 ko04971 ko05012 ko05030 ko05032 ko05034 ko05133 ko05142 ko05145 ko05200 map04015 map04022 map04024 map04062 map04071 map04261 map04360 map04371 map04540 map04611 map04670 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04730 map04914 map04915 map04916 map04921 map04923 map04924 map04926 map04934 map04971 map05012 map05030 map05032 map05034 map05133 map05142 map05145 map05200

Pfam Domains

Protein Families

G-alpha

Protein Analysis

222

Amino Acids

24.98

Weight (kDa)

9.71

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003489)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219081
rosa_laevigata	RLG00000007460 RLG00000014190 RLG00000019035 RLG00000019050 RLG00000024420
rosa_multiflora	Rmu_sc0001829.1_g000012 Rmu_sc0002007.1_g000004 Rmu_sc0002180.1_g000010 Rmu_ssc0000125.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007880 Rroxscaffold_2G00130820 Rroxscaffold_5G00345280
rosa_rugosa	Rorug06G0069500 Rorug06G0069600 Rorug06G0069600 Rorug06G0304600
rosa_samantha	Rh2AG315400 Rh2AG587000 Rh3CG154500 Rh3DG155600 Rh5AG283800 Rh5CG076200 Rh5DG060700 Rh6BG108800 Rh6CG173500 Rh6CG211700 Rh6CG229600 Rh7AG046100 Rh7AG239900 Rh7DG245800
rosa_wichuraiana	Rw1G011050 Rw2G052930 Rw5G025470 Rw5G046740 Rw7G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	252
AccI	GTMKAC	3 cut(s)	9, 350, 365
AciI	CCGC	5 cut(s)	25, 37, 203, 265, 288
AclWI	GGATC	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	658
AcvI	CACGTG	1 cut(s)	235
AcyI	GRCGYC	2 cut(s)	12, 362
AfiI	CCNNNNNNNGG	4 cut(s)	24, 209, 252, 462
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	259, 530, 663
AhdI	GACNNNNNGTC	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	6 cut(s)	162, 194, 239, 271, 581, 613
AluBI	AGCT	5 cut(s)	285, 442, 511, 556, 571
AluI	AGCT	5 cut(s)	285, 442, 511, 556, 571
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	1 cut(s)	574
AoxI	GGCC	3 cut(s)	217, 317, 369
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	285, 553, 653
ApoI	RAATTY	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	217, 218
AxyI	CCTNAGG	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	3 cut(s)	272, 565, 640
BccI	CCATC	1 cut(s)	120
BceAI	ACGGC	2 cut(s)	279, 384
BcoDI	GTCTC	1 cut(s)	630
BfrI	CTTAAG	1 cut(s)	557
BisI	GCNGC	4 cut(s)	266, 286, 554, 654
BlsI	GCNGC	4 cut(s)	267, 287, 555, 655
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	217, 218
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	626
Bpu10I	CCTNAGC	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	2 cut(s)	12, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 209, 252, 462
Bse1I	ACTGG	2 cut(s)	5, 609
Bse21I	CCTNAGG	1 cut(s)	314
Bse3DI	GCAATG	2 cut(s)	240, 466
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	4 cut(s)	24, 209, 252, 462
BseMI	GCAATG	2 cut(s)	240, 466
BseMII	CTCAG	2 cut(s)	378, 638
BseNI	ACTGG	2 cut(s)	5, 609
BseRI	GAGGAG	3 cut(s)	42, 370, 623
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	272, 565, 640
Bsh1285I	CGRYCG	2 cut(s)	292, 347
BshFI	GGCC	3 cut(s)	219, 319, 371
BsiEI	CGRYCG	2 cut(s)	292, 347
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	4 cut(s)	24, 209, 252, 462
BsmAI	GTCTC	1 cut(s)	630
BsnI	GGCC	3 cut(s)	219, 319, 371
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	221, 522
Bsp143I	GATC	2 cut(s)	495, 579
BspACI	CCGC	5 cut(s)	25, 37, 203, 265, 288
BspANI	GGCC	3 cut(s)	219, 319, 371
BspCNI	CTCAG	2 cut(s)	379, 639
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	574
BspTI	CTTAAG	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	240, 466
BsrI	ACTGG	2 cut(s)	5, 609
BssMI	GATC	2 cut(s)	495, 579
BssNI	GRCGYC	2 cut(s)	12, 362
Bst4CI	ACNGT	2 cut(s)	348, 624
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	2 cut(s)	12, 362
BstAFI	CTTAAG	1 cut(s)	557
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	4 cut(s)	314, 387, 512, 647
BstF5I	GGATG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	498, 582
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	2 cut(s)	495, 579
BstMCI	CGRYCG	2 cut(s)	292, 347
BstMWI	GCNNNNNNNGC	7 cut(s)	237, 285, 291, 368, 517, 559, 568
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	272, 565, 640
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	219, 319, 371
BtsCI	GGATG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	457
CciI	TCATGA	1 cut(s)	480
Cfr13I	GGNCC	2 cut(s)	217, 218
CseI	GACGC	2 cut(s)	20, 351
CviAII	CATG	2 cut(s)	481, 631
DdeI	CTNAG	4 cut(s)	314, 387, 512, 647
DpnI	GATC	2 cut(s)	497, 581
DpnII	GATC	2 cut(s)	495, 579
DriI	GACNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	345
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	2 cut(s)	484, 634
FaiI	YATR	4 cut(s)	115, 482, 616, 632
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	2 cut(s)	480, 630
FblI	GTMKAC	3 cut(s)	9, 350, 365
Fnu4HI	GCNGC	4 cut(s)	266, 286, 554, 654
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	4 cut(s)	266, 286, 554, 654
GluI	GCNGC	4 cut(s)	266, 286, 554, 654
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	3 cut(s)	219, 319, 371
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	2 cut(s)	20, 351
Hin1I	GRCGYC	2 cut(s)	12, 362
Hin1II	CATG	2 cut(s)	484, 634
HincII	GTYRAC	2 cut(s)	10, 351
HindII	GTYRAC	2 cut(s)	10, 351
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	5 cut(s)	28, 49, 145, 189, 352
HpaII	CCGG	1 cut(s)	280
Hpy166II	GTNNAC	3 cut(s)	10, 351, 366
Hpy188I	TCNGA	2 cut(s)	420, 588
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	3 cut(s)	10, 351, 366
Hpy99I	CGWCG	2 cut(s)	14, 352
HpyAV	CCTTC	2 cut(s)	116, 593
HpyCH4III	ACNGT	2 cut(s)	348, 624
HpyCH4IV	ACGT	2 cut(s)	68, 234
HpyCH4V	TGCA	3 cut(s)	135, 618, 656
HpyF10VI	GCNNNNNNNGC	7 cut(s)	237, 285, 291, 368, 517, 559, 568
HpyF3I	CTNAG	4 cut(s)	314, 387, 512, 647
HpySE526I	ACGT	2 cut(s)	68, 234
Hsp92I	GRCGYC	2 cut(s)	12, 362
Hsp92II	CATG	2 cut(s)	484, 634
Kzo9I	GATC	2 cut(s)	495, 579
LmnI	GCTCC	3 cut(s)	93, 282, 550
LpnPI	CCDG	8 cut(s)	18, 140, 155, 178, 293, 414, 469, 590
Lsp1109I	GCAGC	3 cut(s)	272, 565, 640
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	2 cut(s)	68, 234
MaeIII	GTNAC	2 cut(s)	59, 634
MalI	GATC	2 cut(s)	497, 581
MboI	GATC	2 cut(s)	495, 579
MboII	GAAGA	3 cut(s)	23, 332, 542
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	2 cut(s)	221, 522
MluCI	AATT	6 cut(s)	109, 162, 270, 536, 564, 658
MlyI	GAGTC	3 cut(s)	43, 139, 346
MmeI	TCCRAC	2 cut(s)	528, 579
MseI	TTAA	3 cut(s)	165, 558, 567
MspA1I	CMGCKG	1 cut(s)	265
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	7 cut(s)	237, 285, 291, 368, 517, 559, 568
NdeII	GATC	2 cut(s)	495, 579
NlaIII	CATG	2 cut(s)	484, 634
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	28, 189
PflMI	CCANNNNNTGG	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	267, 287, 555, 655
PleI	GAGTC	3 cut(s)	43, 139, 346
PmaCI	CACGTG	1 cut(s)	235
PmlI	CACGTG	1 cut(s)	235
PpsI	GAGTC	3 cut(s)	43, 139, 346
Ppu21I	YACGTR	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	219
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	217, 218
PsuI	RGATCY	1 cut(s)	579
SalI	GTCGAC	2 cut(s)	8, 349
SaqAI	TTAA	3 cut(s)	165, 558, 567
SatI	GCNGC	4 cut(s)	266, 286, 554, 654
Sau3AI	GATC	2 cut(s)	495, 579
Sau96I	GGNCC	2 cut(s)	217, 218
SchI	GAGTC	3 cut(s)	43, 139, 346
SduI	GDGCHC	2 cut(s)	221, 522
SfaNI	GCATC	1 cut(s)	442
SmlI	CTYRAG	2 cut(s)	521, 557
SmoI	CTYRAG	2 cut(s)	521, 557
Sse9I	AATT	6 cut(s)	109, 162, 270, 536, 564, 658
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	5 cut(s)	25, 37, 203, 265, 288
SspI	AATATT	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	348, 624
TaiI	ACGT	2 cut(s)	71, 237
TaqI	TCGA	5 cut(s)	9, 81, 343, 350, 383
TasI	AATT	6 cut(s)	109, 162, 270, 536, 564, 658
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	2 cut(s)	28, 189
Tru1I	TTAA	3 cut(s)	165, 558, 567
Tru9I	TTAA	3 cut(s)	165, 558, 567
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	3 cut(s)	285, 553, 653
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	469, 497, 549
Van91I	CCANNNNNTGG	1 cut(s)	252
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	658
XmiI	GTMKAC	3 cut(s)	9, 350, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.