Rroxscaffold_2G00130820

Extra-large guanine nucleotide-binding protein 3-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
67239132 .. 67243755
4624 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00130820.1

Sequence Viewer

Length: 252 bp
ATGATAGATTTTGCTTTGTATAGGTTGGGTACTGTTGTTTTGTGGATTTGTGTTTCGTTGTGTTTGTGTATTTTATTTCAGGAGGGAGAGAAGCCTGATTGTATCATTACTCCGAAACTGAATGTTGGGGGTAAGCTTCGGGCTGATGCCAGCAATGGGAACACTAATGTATTCATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGCTGGCCAAAGTACAGTGCCCTCCAGCTTATTAA

Protein Analysis

83

Amino Acids

9.23

Weight (kDa)

8.69

Isoelectric Point (pI)

15.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 222
AfaI GTAC 2 cut(s) 31, 231
AfiI CCNNNNNNNGG 1 cut(s) 156
AluBI AGCT 4 cut(s) 136, 205, 220, 245
AluI AGCT 4 cut(s) 136, 205, 220, 245
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 21, 54
BalI TGGCCA 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 216
BmsI GCATC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 239
BshFI GGCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 156
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 216, 239
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 224
BspHI TCATGA 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 160
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 34, 234
BstC8I GCNNGC 2 cut(s) 151, 222
BstDEI CTNAG 1 cut(s) 206
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 2 cut(s) 151, 222
CciI TCATGA 1 cut(s) 174
Csp6I GTAC 2 cut(s) 30, 230
CviAII CATG 1 cut(s) 175
CviJI RGCY 7 cut(s) 94, 136, 143, 205, 220, 224, 245
CviKI_1 RGCY 7 cut(s) 94, 136, 143, 205, 220, 224, 245
CviQI GTAC 2 cut(s) 30, 230
DdeI CTNAG 1 cut(s) 206
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 222
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 21, 176
FatI CATG 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 80, 175
HpyCH4III ACNGT 2 cut(s) 34, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 4 cut(s) 65, 108, 163, 206
LweI GCATC 1 cut(s) 136
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MhlI GDGCHC 2 cut(s) 216, 239
MlsI TGGCCA 1 cut(s) 224
MluNI TGGCCA 1 cut(s) 224
MnlI CCTC 2 cut(s) 76, 249
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 1 cut(s) 250
Msp20I TGGCCA 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 178
PagI TCATGA 1 cut(s) 174
RsaI GTAC 2 cut(s) 31, 231
RsaNI GTAC 2 cut(s) 30, 230
SaqAI TTAA 1 cut(s) 250
Sau3AI GATC 1 cut(s) 189
SduI GDGCHC 2 cut(s) 216, 239
SetI ASST 5 cut(s) 26, 138, 207, 222, 247
SfaNI GCATC 1 cut(s) 136
SgeI CNNG 7 cut(s) 92, 107, 152, 162, 187, 229, 233
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 34, 234
TatI WGTACW 1 cut(s) 229
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TscAI CASTG 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 163, 191
TspRI CASTG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.