RLG00000001037

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004885
Physical Location & Seq
Reverse (-)
9525922 .. 9526962
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001037

Sequence Viewer

Length: 411 bp
ATGCTTCGAGGCGTGGCTGGAGGAGGTGAGACCTGGCCTGGACGCATGGGGCGAAGGGAAGGCAAAGTGTTGGAAGAAATTCGTCAAAAGCGAGCTGCAGAAAGATTGAGCAAAACTTCTTCGGGACCCGATCTCAGCCAGATCCCACCTATCAATAATGGAGGAATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAACGAAAATTTGGCTTCCATGGCTGGGCAAAGAGGCCGATAACAACAACATCGCGGTAGGATCCCAGGGCGGTGTCGTCGATAATCTTTTTGTCGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATAATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.98

Weight (kDa)

8.04

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 323
AciI CCGC 2 cut(s) 323, 339
AclWI GGATC 3 cut(s) 136, 324, 337
AcsI RAATTY 2 cut(s) 78, 276
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 293
AjnI CCWGG 3 cut(s) 32, 37, 333
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 3 cut(s) 23, 228, 375
AlwI GGATC 3 cut(s) 136, 324, 337
AoxI GGCC 2 cut(s) 35, 303
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 78, 276
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 125
BamHI GGATCC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 82
BciT130I CCWGG 3 cut(s) 34, 39, 335
BcoDI GTCTC 3 cut(s) 23, 228, 375
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 3 cut(s) 34, 39, 335
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 3 cut(s) 126, 127, 331
BmrFI CCNGG 3 cut(s) 34, 39, 335
BpmI CTGGAG 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 287, 333, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 3 cut(s) 34, 39, 335
BseCI ATCGAT 1 cut(s) 406
BseDI CCNNGG 3 cut(s) 287, 333, 334
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 148, 189, 239
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 37, 305
BshVI ATCGAT 1 cut(s) 406
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 3 cut(s) 23, 228, 375
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 2 cut(s) 37, 305
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 130, 141, 329
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 2 cut(s) 323, 339
BspANI GGCC 2 cut(s) 37, 305
BspCNI CTCAG 3 cut(s) 147, 190, 238
BspDI ATCGAT 1 cut(s) 406
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 3 cut(s) 126, 127, 331
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 3 cut(s) 136, 324, 337
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 3 cut(s) 287, 333, 334
BssMI GATC 3 cut(s) 130, 141, 329
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 3 cut(s) 34, 39, 335
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 134, 198, 225
BstDSI CCRYGG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 3 cut(s) 133, 144, 332
BstMAI GTCTC 3 cut(s) 23, 228, 375
BstMBI GATC 3 cut(s) 130, 141, 329
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 3 cut(s) 34, 39, 335
BstSCI CCNGG 3 cut(s) 32, 37, 333
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 141, 329
BstYI RGATCY 2 cut(s) 141, 329
Bsu15I ATCGAT 1 cut(s) 406
BsuRI GGCC 2 cut(s) 37, 305
BsuTUI ATCGAT 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 287
BtgZI GCGATG 2 cut(s) 219, 304
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 406
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 46, 288
CviJI RGCY 7 cut(s) 17, 37, 95, 138, 283, 292, 305
CviKI_1 RGCY 7 cut(s) 17, 37, 95, 138, 283, 292, 305
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 134, 198, 225
DpnI GATC 3 cut(s) 132, 143, 331
DpnII GATC 3 cut(s) 130, 141, 329
Eco130I CCWWGG 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 23
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 32, 37, 333
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 2 cut(s) 49, 291
FaiI YATR 2 cut(s) 47, 289
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 45, 287
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 37, 305
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 185
Hin1II CATG 2 cut(s) 49, 291
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 2 cut(s) 192, 383
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 4 cut(s) 178, 199, 228, 388
Hpy188III TCNNGA 2 cut(s) 123, 380
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 48, 53
HpyCH4V TGCA 2 cut(s) 98, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 3 cut(s) 134, 198, 225
Hsp92II CATG 2 cut(s) 49, 291
HspAI GCGC 1 cut(s) 183
KflI GGGWCCC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 130, 141, 329
Lsp1109I GCAGC 1 cut(s) 82
MalI GATC 3 cut(s) 132, 143, 331
MboI GATC 3 cut(s) 130, 141, 329
MboII GAAGA 4 cut(s) 86, 111, 259, 275
MflI RGATCY 2 cut(s) 141, 329
MluCI AATT 2 cut(s) 78, 276
MlyI GAGTC 2 cut(s) 186, 377
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 5 cut(s) 14, 17, 155, 295, 383
MroXI GAANNNNTTC 1 cut(s) 78
MspR9I CCNGG 3 cut(s) 34, 39, 335
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 34, 39, 335
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 289
NcoI CCATGG 1 cut(s) 287
NdeII GATC 3 cut(s) 130, 141, 329
NlaIII CATG 2 cut(s) 49, 291
NlaIV GGNNCC 3 cut(s) 126, 127, 331
PasI CCCWGGG 1 cut(s) 334
PcsI WCGNNNNNNNCGW 2 cut(s) 49, 88
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 2 cut(s) 186, 377
PpsI GAGTC 2 cut(s) 186, 377
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 3 cut(s) 32, 37, 333
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 3 cut(s) 32, 37, 333
PspN4I GGNNCC 3 cut(s) 126, 127, 331
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 2 cut(s) 141, 329
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 130, 141, 329
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 2 cut(s) 186, 377
ScrFI CCNGG 3 cut(s) 34, 39, 335
SetI ASST 4 cut(s) 28, 35, 97, 151
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 125
Sse9I AATT 2 cut(s) 78, 276
SsiI CCGC 2 cut(s) 323, 339
StyD4I CCNGG 3 cut(s) 32, 37, 333
StyI CCWWGG 1 cut(s) 287
TaqI TCGA 5 cut(s) 7, 190, 348, 379, 406
TasI AATT 2 cut(s) 78, 276
TatI WGTACW 1 cut(s) 212
TseI GCWGC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 2 cut(s) 78, 276
XmnI GAANNNNTTC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.