Rh3CG356100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004885
Physical Location & Seq
Reverse (-)
43620890 .. 43625521
4632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG356100.1

Sequence Viewer

Length: 309 bp
ATGGACAATAATTCAAAGGCACTGATGGAAACTCTAGAGGCTGAAATTTTCGGAGTGCCTCGAGATTTGTATATCTTCAGAGATGATATTATTCACTTAATGGAAATGCAATGGCTCAGCGCAAACTGCATAGTGGCTTACATGAGGTACCTATATGAGGTCCTTGAGAAATCTGACATGGTTGATACATTTGGGTTCGTGGATCCTGCACGGTGGAGTAGGAAGTCGAAGAGAACCAGCTACTCACAAGAGCAAATTGATGAGGTGCAGATTGAATGGAGTGAGTTTGTTACAAGAAAATACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

102

Amino Acids

12.28

Weight (kDa)

4.71

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AclWI GGATC 2 cut(s) 197, 210
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 15, 275
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
AlwI GGATC 2 cut(s) 197, 210
Ama87I CYCGRG 1 cut(s) 60
ApoI RAATTY 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 160
BamHI GGATCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 147
BccI CCATC 1 cut(s) 19
BfaI CTAG 1 cut(s) 35
BlpI GCTNAGC 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 149, 204
Bpu1102I GCTNAGC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 130
BsgI GTGCAG 2 cut(s) 192, 287
BshNI GGYRCC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 1 cut(s) 202
Bsp1720I GCTNAGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 149, 204
BspPI GGATC 2 cut(s) 197, 210
BspT107I GGYRCC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 116
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 116
BstENI CCTNNNNNAGG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 142, 178
CviJI RGCY 4 cut(s) 41, 115, 137, 240
CviKI_1 RGCY 4 cut(s) 41, 115, 137, 240
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 160
FaeI CATG 2 cut(s) 145, 181
FaiI YATR 6 cut(s) 72, 131, 143, 154, 156, 179
FatI CATG 2 cut(s) 141, 177
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 145, 181
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
Hpy188I TCNGA 3 cut(s) 53, 80, 175
Hpy188III TCNNGA 2 cut(s) 35, 62
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 109, 129, 209, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 2 cut(s) 145, 181
HspAI GCGC 1 cut(s) 120
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 2 cut(s) 219, 250
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 67, 241
MflI RGATCY 1 cut(s) 202
MluCI AATT 3 cut(s) 10, 45, 255
MnlI CCTC 5 cut(s) 31, 69, 138, 151, 256
MseI TTAA 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 145, 181
NlaIV GGNNCC 2 cut(s) 149, 204
PaeR7I CTCGAG 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 149, 204
PspPI GGNCC 1 cut(s) 160
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 98
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 160
SetI ASST 5 cut(s) 149, 153, 162, 242, 267
Sfr274I CTCGAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 160
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 60, 164
SmoI CTYRAG 2 cut(s) 60, 164
Sse9I AATT 3 cut(s) 10, 45, 255
SspMI CTAG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 61, 227
TasI AATT 3 cut(s) 10, 45, 255
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 27
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 160
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 1 cut(s) 45
XbaI TCTAGA 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 60
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.