Rh5AG319900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004885
Physical Location & Seq
Forward (+)
47330341 .. 47332547
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG319900.1

Sequence Viewer

Length: 498 bp
ATGGATTCCCGGCACGCATCTCTAGGCCGCCAAATGTTCGACGAAATTCGTCAAAAGCGAGTTGCAGAAAGATTGAGTAAAACTTCTTCGGGACCCGATCTCAGCCAGATCCCACCTATCGATAATGGAGGAATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGTAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGGTAGGACTCTTGTGTTTGTTGTTCTTGTTTGTTTCTTTTCCAAAAGTTTTCACTTCAGGAGGGTTTGGTTGTGGGCAATGGTCAGTTTGGTTGCCTAATTATATTGTCGACTTATACAGGCTGGGCAAAGAGGCCGATAACAACAACATCGCCGTAGGATCCCGGGGCGGCGTTGTCGATAATCTTTTTGTCGGCAAATCCCTCAATCGAGACTCCGATATCATCTTTGATTATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.43

Weight (kDa)

6.59

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 366
AciI CCGC 2 cut(s) 28, 426
AclWI GGATC 3 cut(s) 103, 411, 424
AcsI RAATTY 2 cut(s) 45, 244
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 181
Alw26I GTCTC 2 cut(s) 195, 462
AlwI GGATC 3 cut(s) 103, 411, 424
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 2 cut(s) 25, 390
ApoI RAATTY 2 cut(s) 45, 244
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 3 cut(s) 10, 421, 422
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 1 cut(s) 92
BamHI GGATCC 1 cut(s) 416
BarI GAAGNNNNNNTAC 2 cut(s) 70, 102
BceAI ACGGC 1 cut(s) 395
BcnI CCSGG 3 cut(s) 10, 421, 422
BcoDI GTCTC 2 cut(s) 195, 462
BfaI CTAG 1 cut(s) 23
BisI GCNGC 2 cut(s) 28, 427
BlsI GCNGC 2 cut(s) 29, 428
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 3 cut(s) 10, 421, 422
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 93, 94, 418
BmrFI CCNGG 3 cut(s) 10, 421, 422
BmsI GCATC 1 cut(s) 26
BpuMI CCSGG 3 cut(s) 10, 421, 422
Bsa29I ATCGAT 2 cut(s) 120, 493
BsaJI CCNNGG 3 cut(s) 255, 420, 421
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 341
BseCI ATCGAT 2 cut(s) 120, 493
BseDI CCNNGG 3 cut(s) 255, 420, 421
BseMI GCAATG 1 cut(s) 341
BseMII CTCAG 3 cut(s) 115, 156, 206
BseNI ACTGG 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 379
BshFI GGCC 2 cut(s) 27, 392
BshVI ATCGAT 2 cut(s) 120, 493
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 2 cut(s) 10, 421
BslFI GGGAC 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 195, 462
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 2 cut(s) 27, 392
BsoBI CYCGRG 1 cut(s) 420
Bsp143I GATC 3 cut(s) 97, 108, 416
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 2 cut(s) 28, 426
BspANI GGCC 2 cut(s) 27, 392
BspCNI CTCAG 3 cut(s) 114, 157, 205
BspDI ATCGAT 2 cut(s) 120, 493
BspLI GGNNCC 3 cut(s) 93, 94, 418
BspPI GGATC 3 cut(s) 103, 411, 424
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 3 cut(s) 255, 420, 421
BssMI GATC 3 cut(s) 97, 108, 416
BssT1I CCWWGG 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 101, 165, 192
BstDSI CCRYGG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 100, 111, 419
BstMAI GTCTC 2 cut(s) 195, 462
BstMBI GATC 3 cut(s) 97, 108, 416
BstSCI CCNGG 3 cut(s) 8, 419, 420
BstX2I RGATCY 2 cut(s) 108, 416
BstYI RGATCY 2 cut(s) 108, 416
Bsu15I ATCGAT 2 cut(s) 120, 493
BsuRI GGCC 2 cut(s) 27, 392
BsuTUI ATCGAT 2 cut(s) 120, 493
BtgI CCRYGG 1 cut(s) 255
BtgZI GCGATG 2 cut(s) 186, 391
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 92
Cfr9I CCCGGG 1 cut(s) 420
ClaI ATCGAT 2 cut(s) 120, 493
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 256
CviJI RGCY 5 cut(s) 27, 105, 251, 379, 392
CviKI_1 RGCY 5 cut(s) 27, 105, 251, 379, 392
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 3 cut(s) 101, 165, 192
DpnI GATC 3 cut(s) 99, 110, 418
DpnII GATC 3 cut(s) 97, 108, 416
Eco130I CCWWGG 1 cut(s) 255
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 92
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 259
FaiI YATR 3 cut(s) 257, 360, 373
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 255
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 28, 427
Fsp4HI GCNGC 2 cut(s) 28, 427
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 28, 427
GsaI CCCAGC 1 cut(s) 383
HaeIII GGCC 2 cut(s) 27, 392
HapII CCGG 2 cut(s) 10, 421
HhaI GCGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 4 cut(s) 5, 159, 264, 470
HpaII CCGG 2 cut(s) 10, 421
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 145, 166, 195, 475
Hpy188III TCNNGA 3 cut(s) 90, 315, 467
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 101, 165, 192
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 150
KflI GGGWCCC 1 cut(s) 92
Kzo9I GATC 3 cut(s) 97, 108, 416
LpnPI CCDG 7 cut(s) 23, 119, 212, 300, 361, 365, 434
LweI GCATC 1 cut(s) 26
MaeI CTAG 1 cut(s) 23
MalI GATC 3 cut(s) 99, 110, 418
MboI GATC 3 cut(s) 97, 108, 416
MboII GAAGA 3 cut(s) 78, 226, 242
MflI RGATCY 2 cut(s) 108, 416
MluCI AATT 3 cut(s) 45, 244, 355
MlyI GAGTC 3 cut(s) 153, 258, 464
MnlI CCTC 4 cut(s) 122, 311, 382, 470
MspI CCGG 2 cut(s) 10, 421
MspR9I CCNGG 3 cut(s) 10, 421, 422
NciI CCSGG 3 cut(s) 10, 421, 422
NcoI CCATGG 1 cut(s) 255
NdeII GATC 3 cut(s) 97, 108, 416
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 3 cut(s) 93, 94, 418
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 29, 428
PleI GAGTC 3 cut(s) 153, 258, 464
PpsI GAGTC 3 cut(s) 153, 258, 464
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 379
PspN4I GGNNCC 3 cut(s) 93, 94, 418
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
PsuI RGATCY 2 cut(s) 108, 416
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 365
SatI GCNGC 2 cut(s) 28, 427
Sau3AI GATC 3 cut(s) 97, 108, 416
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 3 cut(s) 153, 258, 464
ScrFI CCNGG 3 cut(s) 10, 421, 422
SetI ASST 1 cut(s) 118
SfaNI GCATC 1 cut(s) 26
SinI GGWCC 1 cut(s) 92
SmaI CCCGGG 1 cut(s) 422
Sse9I AATT 3 cut(s) 45, 244, 355
SsiI CCGC 2 cut(s) 28, 426
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 8, 419, 420
StyI CCWWGG 1 cut(s) 255
TaqI TCGA 7 cut(s) 39, 120, 157, 366, 435, 466, 493
TasI AATT 3 cut(s) 45, 244, 355
TatI WGTACW 1 cut(s) 179
TauI GCSGC 2 cut(s) 30, 429
TfiI GAWTC 1 cut(s) 5
TspMI CCCGGG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 2 cut(s) 45, 244
XmaI CCCGGG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.